NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19076057|ref|NP_588557|]
View 

protein Pal1 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Pal1 super family cl07071
Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the ...
 161-281 1.51e-33

Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the maintenance of cylindrical cellular morphology. It localizes to sites of active growth. Pal1 physically interacts and displays overlapping localization with the Huntingtin-interacting-protein (Hip1)-related protein Sla2p/End4p.


The actual alignment was detected with superfamily member pfam08316:

Pssm-ID: 400558  Cd Length: 135  Bit Score: 122.29  E-value: 1.51e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19076057   161 DQIDRLDVTGLYGSGSFHHDGPFDACRPHRNRNSKKAPVAAFPKDSIANSIPKVGET-----------YNDPSVPKDFSR 229
Cdd:pfam08316   1 DTIDKLDVTGIFGGGLFHHDGPFDACTPHRNKNSKRAPVQAFPKDGPNNSIGGAGPLnkksdmdeffgRGDDEAFNDFST 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 19076057   230 KAIHESLRTKNILQSPYKSVGIeeeFPSSGNND------TPGLTDSTRIEGAMASKNA 281
Cdd:pfam08316  81 GRKSNSSSTTDAIKPSSPSVTQ---FDPKTKAEpvhgpeTAGLGSSTFLDGAPASRAA 135
 
Name Accession Description Interval E-value
Pal1 pfam08316
Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the ...
 161-281 1.51e-33

Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the maintenance of cylindrical cellular morphology. It localizes to sites of active growth. Pal1 physically interacts and displays overlapping localization with the Huntingtin-interacting-protein (Hip1)-related protein Sla2p/End4p.


Pssm-ID: 400558  Cd Length: 135  Bit Score: 122.29  E-value: 1.51e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19076057   161 DQIDRLDVTGLYGSGSFHHDGPFDACRPHRNRNSKKAPVAAFPKDSIANSIPKVGET-----------YNDPSVPKDFSR 229
Cdd:pfam08316   1 DTIDKLDVTGIFGGGLFHHDGPFDACTPHRNKNSKRAPVQAFPKDGPNNSIGGAGPLnkksdmdeffgRGDDEAFNDFST 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 19076057   230 KAIHESLRTKNILQSPYKSVGIeeeFPSSGNND------TPGLTDSTRIEGAMASKNA 281
Cdd:pfam08316  81 GRKSNSSSTTDAIKPSSPSVTQ---FDPKTKAEpvhgpeTAGLGSSTFLDGAPASRAA 135
 
Name Accession Description Interval E-value
Pal1 pfam08316
Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the ...
 161-281 1.51e-33

Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the maintenance of cylindrical cellular morphology. It localizes to sites of active growth. Pal1 physically interacts and displays overlapping localization with the Huntingtin-interacting-protein (Hip1)-related protein Sla2p/End4p.


Pssm-ID: 400558  Cd Length: 135  Bit Score: 122.29  E-value: 1.51e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19076057   161 DQIDRLDVTGLYGSGSFHHDGPFDACRPHRNRNSKKAPVAAFPKDSIANSIPKVGET-----------YNDPSVPKDFSR 229
Cdd:pfam08316   1 DTIDKLDVTGIFGGGLFHHDGPFDACTPHRNKNSKRAPVQAFPKDGPNNSIGGAGPLnkksdmdeffgRGDDEAFNDFST 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 19076057   230 KAIHESLRTKNILQSPYKSVGIeeeFPSSGNND------TPGLTDSTRIEGAMASKNA 281
Cdd:pfam08316  81 GRKSNSSSTTDAIKPSSPSVTQ---FDPKTKAEpvhgpeTAGLGSSTFLDGAPASRAA 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH