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Conserved domains on  [gi|295442928|ref|NP_592912|]
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mitochondrial 37S ribosomal protein uS19m [Schizosaccharomyces pombe]

Protein Classification

S19 family ribosomal protein( domain architecture ID 10446118)

S19 family ribosomal protein similar to mitochondrial 37S ribosomal protein S19

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S19 pfam00203
Ribosomal protein S19;
11-87 6.61e-34

Ribosomal protein S19;


:

Pssm-ID: 459710  Cd Length: 80  Bit Score: 111.33  E-value: 6.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295442928  11 SVWKGPNVVDFG---VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRKAFHY 87
Cdd:pfam00203  1 SLKKGPFVDHKLlkkVRKAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
 
Name Accession Description Interval E-value
Ribosomal_S19 pfam00203
Ribosomal protein S19;
11-87 6.61e-34

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 111.33  E-value: 6.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295442928  11 SVWKGPNVVDFG---VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRKAFHY 87
Cdd:pfam00203  1 SLKKGPFVDHKLlkkVRKAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 9-83 3.43e-28

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 97.45  E-value: 3.43e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 295442928  9 ARSVWKGPnVVDFG----VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:COG0185   2 RRSLKKGP-FVDEKllkkVEKANESGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRT 79
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 9-82 5.79e-27

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 94.09  E-value: 5.79e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 295442928  9 ARSVWKGPnVVDFG----VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTR 82
Cdd:PRK00357  2 ARSLKKGP-FVDGHllkkVEKANESGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTR 78
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 9-84 7.31e-26

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 91.65  E-value: 7.31e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 295442928   9 ARSVWKGPNVVDF---GVNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRKA 84
Cdd:TIGR01050  2 SRSLKKGPFVDHHllkKVEKLNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTF 80
 
Name Accession Description Interval E-value
Ribosomal_S19 pfam00203
Ribosomal protein S19;
11-87 6.61e-34

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 111.33  E-value: 6.61e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 295442928  11 SVWKGPNVVDFG---VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRKAFHY 87
Cdd:pfam00203  1 SLKKGPFVDHKLlkkVRKAKAAGKPKVIKTHSRDSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTRKFVGH 80
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 9-83 3.43e-28

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 97.45  E-value: 3.43e-28
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 295442928  9 ARSVWKGPnVVDFG----VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:COG0185   2 RRSLKKGP-FVDEKllkkVEKANESGEKKVIKTWSRRSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTRT 79
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 9-82 5.79e-27

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 94.09  E-value: 5.79e-27
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 295442928  9 ARSVWKGPnVVDFG----VNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTR 82
Cdd:PRK00357  2 ARSLKKGP-FVDGHllkkVEKANESGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTR 78
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 9-84 7.31e-26

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 91.65  E-value: 7.31e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 295442928   9 ARSVWKGPNVVDF---GVNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRKA 84
Cdd:TIGR01050  2 SRSLKKGPFVDHHllkKVEKLNESGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTRTF 80
rps19p PRK04038
30S ribosomal protein S19P; Provisional
 30-83 6.66e-23

30S ribosomal protein S19P; Provisional


Pssm-ID: 235209  Cd Length: 134  Bit Score: 85.30  E-value: 6.66e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 295442928  30 KGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:PRK04038  60 KKGRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRK 113
rps19 CHL00050
ribosomal protein S19
 35-83 4.09e-19

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 74.19  E-value: 4.09e-19
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 295442928 35 IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:CHL00050 31 IVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTRN 79
uS19_arch TIGR01025
ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal ...
 34-83 6.77e-18

ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal protein uS19 (previously S15) and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273400  Cd Length: 135  Bit Score: 72.57  E-value: 6.77e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 295442928   34 PIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:TIGR01025  65 VIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRK 114
PTZ00096 PTZ00096
40S ribosomal protein S15; Provisional
 33-83 1.67e-15

40S ribosomal protein S15; Provisional


Pssm-ID: 185442  Cd Length: 143  Bit Score: 66.59  E-value: 1.67e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 295442928  33 VPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:PTZ00096  74 KAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYK 124
PLN03147 PLN03147
ribosomal protein S19; Provisional
 10-83 3.50e-11

ribosomal protein S19; Provisional


Pssm-ID: 178692  Cd Length: 92  Bit Score: 54.22  E-value: 3.50e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 295442928 10 RSVWKGPNVVDFGVNVQQCIKGNVPIKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 83
Cdd:PLN03147  1 QAIWKGAFVDAFLARIKKKRDLLLGKKIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTRK 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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