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Conserved domains on  [gi|19114089|ref|NP_593177|]
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nuclear bridge Ish domain protein Les1 [Schizosaccharomyces pombe]

Protein Classification

Ish1 domain-containing protein( domain architecture ID 10563241)

Ish1 domain-containing protein similar to Saccharomyces cerevisiae meiotic sister chromatid recombination protein 1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ish1 pfam10281
Putative nuclear envelope organization protein; This entry represents a repeat found in the ...
 136-168 6.83e-05

Putative nuclear envelope organization protein; This entry represents a repeat found in the fungal protein Ish1, a protein which has a role in nuclear membrane organization.


:

Pssm-ID: 431195  Cd Length: 37  Bit Score: 39.72  E-value: 6.83e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 19114089   136 FNSWTNSELSRWLIKNKYEV-PEPGTREQLLETV 168
Cdd:pfam10281   1 FDTWSDSDLKAWLDSHGIPVsPQGSTRDELLKLA 34
 
Name Accession Description Interval E-value
Ish1 pfam10281
Putative nuclear envelope organization protein; This entry represents a repeat found in the ...
 136-168 6.83e-05

Putative nuclear envelope organization protein; This entry represents a repeat found in the fungal protein Ish1, a protein which has a role in nuclear membrane organization.


Pssm-ID: 431195  Cd Length: 37  Bit Score: 39.72  E-value: 6.83e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 19114089   136 FNSWTNSELSRWLIKNKYEV-PEPGTREQLLETV 168
Cdd:pfam10281   1 FDTWSDSDLKAWLDSHGIPVsPQGSTRDELLKLA 34
 
Name Accession Description Interval E-value
Ish1 pfam10281
Putative nuclear envelope organization protein; This entry represents a repeat found in the ...
 136-168 6.83e-05

Putative nuclear envelope organization protein; This entry represents a repeat found in the fungal protein Ish1, a protein which has a role in nuclear membrane organization.


Pssm-ID: 431195  Cd Length: 37  Bit Score: 39.72  E-value: 6.83e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 19114089   136 FNSWTNSELSRWLIKNKYEV-PEPGTREQLLETV 168
Cdd:pfam10281   1 FDTWSDSDLKAWLDSHGIPVsPQGSTRDELLKLA 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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