NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19114248|ref|NP_593336|]
View 

60S ribosomal protein eL20 [Schizosaccharomyces pombe]

Protein Classification

eL20 family ribosomal protein( domain architecture ID 10484806)

eL20 family ribosomal protein includes eukaryotic protein L18A, archaeal 50S ribosomal protein L18Ae (often referred to as L20e or LX) as well as fungal 60S ribosomal protein L20

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L18A pfam01775
Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal ...
 79-125 3.61e-17

Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.


:

Pssm-ID: 396369  Cd Length: 60  Bit Score: 71.45  E-value: 3.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 19114248    79 RYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKV 125
Cdd:pfam01775  13 GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV 59
 
Name Accession Description Interval E-value
Ribosomal_L18A pfam01775
Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal ...
 79-125 3.61e-17

Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.


Pssm-ID: 396369  Cd Length: 60  Bit Score: 71.45  E-value: 3.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 19114248    79 RYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKV 125
Cdd:pfam01775  13 GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV 59
 
Name Accession Description Interval E-value
Ribosomal_L18A pfam01775
Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal ...
 79-125 3.61e-17

Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.


Pssm-ID: 396369  Cd Length: 60  Bit Score: 71.45  E-value: 3.61e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 19114248    79 RYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKV 125
Cdd:pfam01775  13 GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEV 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH