|
Name |
Accession |
Description |
Interval |
E-value |
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
22-354 |
4.83e-116 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 336.58 E-value: 4.83e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 22 LGEVSTVDLLTlditelerrthcSQSELLQLieqislllqpvrcsaskvtskylTTGDVKLDETLHGGIPVGQLTEICGE 101
Cdd:pfam08423 1 MGFTTATELHQ------------RRSELIQI-----------------------TTGSKELDKLLGGGIETGSITEIFGE 45
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 102 SGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpERYpKADKKDIIIKNPGDRVYTIlcpdlE 181
Cdd:pfam08423 46 FRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERLVAIA----ERY-GLDPEDVLDNVAYARAYNS-----E 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 182 SQEHIIQyQLPILFNRDKIGLVILDSVASNYRAElrynrskshFRDLDNIAKRGNQLGKLAMTLRTLAHQHEAAVVIANQ 261
Cdd:pfam08423 116 HQMQLLQ-QAAAMMSESRFALLIVDSATALYRTD---------FSGRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQ 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 262 VSDRiprdydaiglfsLDYQSQWFSGwddtdpNPKIPSLGLVWTNNISTRLALIKKTDsatnnSGRIFRVVYSPNSPRLD 341
Cdd:pfam08423 186 VVAQ------------VDGAAGMFSG------DPKKPIGGHIMAHASTTRLSLRKGRG-----EQRICKIYDSPCLPESE 242
|
330
....*....|...
gi 19114539 342 VRICIGSVGIYSC 354
Cdd:pfam08423 243 AVFAIGSGGIIDP 255
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
82-339 |
3.48e-111 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 324.24 E-value: 3.48e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 82 LDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELARYLPERYPkadkk 161
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLPKRYH----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 162 DIIIKNPGDRVYTILCPDLESQEHIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSkshfrdldNIAKRGNQLGKL 241
Cdd:cd19491 76 LEKAKNFLDNIFVEHVADLETLEHCLNYQLPALLERGPIRLVVIDSIAALFRSEFDTSRS--------DLVERAKYLRRL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 242 AMTLRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLVWTNNISTRLALIKKTD-- 319
Cdd:cd19491 148 ADHLKRLADKYNLAVVVVNQVTDRFDSSSDASGLGVLDYLSQFSSFSGGVSGNRKVPALGLTWANLVNTRLMLSRTPKri 227
|
250 260
....*....|....*....|...
gi 19114539 320 ---SATNNSGRIFRVVYSPNSPR 339
Cdd:cd19491 228 tdsSAASISVRRLEVVFSPHLPP 250
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
83-336 |
8.43e-36 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 129.75 E-value: 8.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 83 DETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELARylpERYPKADKKD 162
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAE---ARFPEAFSGF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 163 IIIK-NPGD-----RVYTILCPD--LES----QEHIIQYqlpilfnrdKIGLVILDSVASNYRAElrYNRSkshfrdLDN 230
Cdd:cd19493 78 MEENeRAEEmlkrvAVVRVTTLAqlLERlpnlEEHILSS---------GVRLVVIDSIAALVRRE--FGGS------DGE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 231 IAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDRIprdydaiglfsldyqsqwfsgWDDTDPNPKI-PSLGLVWTNNIS 309
Cdd:cd19493 141 VTERHNALAREASSLKRLAEEFRIAVLVTNQATTHF---------------------GDAGDGSSGVtAALGDAWAHAVN 199
|
250 260
....*....|....*....|....*..
gi 19114539 310 TRLALIKKTDSatnnSGRIFRVVYSPN 336
Cdd:cd19493 200 TRLRLERCLLQ----LRRVLEIVKSPL 222
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
93-319 |
1.85e-32 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 119.25 E-value: 1.85e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 93 GQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLetkrlfelarylperypkadkkdiiiknpgdRV 172
Cdd:cd19492 1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF-------------------------------NI 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 173 YTILCPDLESQEHIIqYQLP-ILFNRDKIGLVILDSVAsnyraelrynrskSHFR-DLDNIAKRGNQLGKLAMTLRTLAH 250
Cdd:cd19492 50 HYFRVHDYVELLALI-NSLPkFLEDHPKVKLIVVDSIA-------------FPFRhDFDDLAQRTRLLNGLAQLLHSLAR 115
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19114539 251 QHEAAVVIANQVSDRIprdydaiglfSLDYQSQWfsgwddtdpnpkIPSLGLVWTNNISTRLALIKKTD 319
Cdd:cd19492 116 QHNLAVVLTNQVTTKI----------SEDGQSQL------------VPALGESWSHACTTRLFLTWDEK 162
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
73-265 |
7.55e-30 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 116.13 E-value: 7.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 73 KYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELARYLP 152
Cdd:PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 153 ERyPKADKKDIIIKnpgdRVYT----ILCpdLESQEHIIQYQLPilfnrdkIGLVILDSVASNYRAElrynrskshFRDL 228
Cdd:PRK04301 162 LD-PDEVLDNIHVA----RAYNsdhqMLL--AEKAEELIKEGEN-------IKLVIVDSLTAHFRAE---------YVGR 218
|
170 180 190
....*....|....*....|....*....|....*..
gi 19114539 229 DNIAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDR 265
Cdd:PRK04301 219 GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMAR 255
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
45-351 |
2.81e-29 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 115.10 E-value: 2.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 45 SQSELLQLIEQISLLLQPVRCSASKVTSK-----YLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQL 119
Cdd:PTZ00035 65 SEAKVEKIKEAASKLVPMGFISATEYLEArkniiRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 120 PLSLGGMNKAAVFISTESGLETKRLFELArylpERY---PKADKKDIIIKnpgdRVYTIlcpdlESQEHIIQyQLPILFN 196
Cdd:PTZ00035 145 PIEQGGGEGKVLYIDTEGTFRPERIVQIA----ERFgldPEDVLDNIAYA----RAYNH-----EHQMQLLS-QAAAKMA 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 197 RDKIGLVILDSVASNYRAElrynrskshFRDLDNIAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDriprDYDAIGLF 276
Cdd:PTZ00035 211 EERFALLIVDSATALFRVD---------YSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMA----DVDGASMF 277
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19114539 277 SldyqsqwfsgwddtdPNPKIPSLGLVWTNNISTRLALIKKTDSAtnnsgRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:PTZ00035 278 V---------------ADPKKPIGGHIIAHASTTRLSLRKGRGEQ-----RICKIYDSPNLPESEAVFAISEGGI 332
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
93-314 |
3.27e-29 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 111.29 E-value: 3.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 93 GQLTEICGESGSGKSQFCMQLCLMVQLplsLGGmnkAAVFISTESGLETKRLFELARYLPERYPKADKKDiiiknpgDRV 172
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALL---LGG---GVVWIDTEGAFPPSRLVQILEASPSSELELAEAL-------SRL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 173 YTILCPDLESQEHIIQYQLPILFNRDKIGLVILDSVASNYRAELRynrskSHFRDLDNIAKRGNQLGKLAMTLRTLAHQH 252
Cdd:cd01393 68 LYFRPPDTLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFP-----RGGDGDSSSSLRARLLSQLARALQKLAAQF 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19114539 253 EAAVVIANQVSDRIPRdydaiglfsldyqsqwfSGWddtdPNPKIPSLGLVWTNNISTRLAL 314
Cdd:cd01393 143 NLAVVVTNQVTTKIRG-----------------GSG----ASLVPPALGNTWEHSVSTRLLL 183
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
74-351 |
1.24e-28 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 113.67 E-value: 1.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 74 YLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpE 153
Cdd:PLN03186 104 QITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA----E 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 154 RYpKADKKDIIIKNPGDRVYTIlcpdlesqEHiiQYQLPI----LFNRDKIGLVILDSVASNYRAElrynrskshFRDLD 229
Cdd:PLN03186 180 RF-GLNGADVLENVAYARAYNT--------DH--QSELLLeaasMMAETRFALMIVDSATALYRTE---------FSGRG 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 230 NIAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDRIprdyDAIGLFsldyqsqwfsgwddTDPNPKiPSLGLVWTNNIS 309
Cdd:PLN03186 240 ELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQV----DGSAFF--------------AGPQLK-PIGGNIMAHAST 300
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 19114539 310 TRLALIKKTdsatnNSGRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:PLN03186 301 TRLALRKGR-----GENRICKVISSPCLPEAEARFSISSEGV 337
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
74-351 |
1.95e-28 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 112.51 E-value: 1.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 74 YLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpE 153
Cdd:TIGR02239 77 QLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA----E 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 154 RYpKADKKDIIIKNPGDRVYtilcpDLESQEHIIQyQLPILFNRDKIGLVILDSVASNYRAElrynrskshFRDLDNIAK 233
Cdd:TIGR02239 153 RY-GLNPEDVLDNVAYARAY-----NTDHQLQLLQ-QAAAMMSESRFALLIVDSATALYRTD---------FSGRGELSA 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 234 RGNQLGKLAMTLRTLAHQHEAAVVIANQVsdriprdydaigLFSLDYQSQWFSgwddtdPNPKIPSLGLVWTNNISTRLA 313
Cdd:TIGR02239 217 RQMHLARFLRSLQRLADEFGVAVVITNQV------------VAQVDGAGSMFA------GDPKKPIGGNIMAHASTTRLS 278
|
250 260 270
....*....|....*....|....*....|....*...
gi 19114539 314 LIKKtdsatNNSGRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:TIGR02239 279 LRKG-----RGEQRICKIYDSPCLPESEAMFAIYEDGI 311
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
75-351 |
4.13e-28 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 109.71 E-value: 4.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpER 154
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA----ER 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 YpKADKKDIIIKNPGDRVYtilcpdleSQEHiiQYQLPI----LFNRDKIGLVILDSVASNYRAElrynrskshFRDLDN 230
Cdd:cd19513 77 Y-GLNGEDVLDNVAYARAY--------NTDH--QMQLLIqasaMMAESRYALLIVDSATALYRTD---------YSGRGE 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 231 IAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDRIprdyDAIGLFSldyqsqwfsgwddtdPNPKIPSLGLVWTNNIST 310
Cdd:cd19513 137 LSARQMHLAKFLRMLQRLADEFGVAVVITNQVVAQV----DGAAMFA---------------GDPKKPIGGNIMAHASTT 197
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 19114539 311 RLALiKKTDSATnnsgRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:cd19513 198 RLYL-RKGRGET----RICKIYDSPCLPEAEAVFAITEDGI 233
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
75-351 |
3.29e-27 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 107.23 E-value: 3.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpER 154
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIA----QR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 YpKADKKDIIiknpgDRVYTILCPDLESQEHIIqYQLPILFNRDKIGLVILDSVASNYRAElrynrskshFRDLDNIAKR 234
Cdd:cd01123 77 F-GLDPDDVL-----DNVAYARAFNSDHQTQLL-DQAAAMMVESRFKLLIVDSATALYRTD---------YSGRGELSAR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 235 GNQLGKLAMTLRTLAHQHEAAVVIANQVSDRIprdyDAIGLFSldyqsqwfsgwddtdPNPKIPSLGLVWTNNISTRLAL 314
Cdd:cd01123 141 QMHLAKFLRMLQRLADEFGVAVVVTNQVVAQV----DGAMMFA---------------ADPKKPIGGNILAHASTTRLYL 201
|
250 260 270
....*....|....*....|....*....|....*..
gi 19114539 315 iKKTDSATnnsgRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:cd01123 202 -RKGRGET----RICKIYDSPCLPEAEAVFAITADGV 233
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
75-351 |
1.49e-26 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 105.52 E-value: 1.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELARYLPER 154
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKALGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 yPKADKKDIIIKNPGDRVYTILCpdLESQEHIIQyqlpilfNRDKIGLVILDSVASNYRAElrynrskshFRDLDNIAKR 234
Cdd:cd19515 81 -PDEVLDNIYVARAYNSNHQMLL--VEKAEDLIK-------EGNNIKLLIVDSLTSHFRAE---------YVGRGTLAER 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 235 GNQLGKLAMTLRTLAHQHEAAVVIANQVSDRiPrdyDAiglfsldyqsqwFSGwddtdpNPKIPSLGLVWTNNISTRLAL 314
Cdd:cd19515 142 QQKLNKHLHDLHRLADLYNIAVLVTNQVMAK-P---DA------------FFG------DPTQAIGGHILGHAATFRVYL 199
|
250 260 270
....*....|....*....|....*....|....*..
gi 19114539 315 IKKtdsatNNSGRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:cd19515 200 RKG-----KGGKRIARLVDSPHLPEGEAVFRITEKGI 231
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
75-351 |
1.92e-26 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 106.75 E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELARYLpER 154
Cdd:TIGR02236 77 ITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEAR-GL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 YPKADKKDIIIKNPGDRVYTILCpdLESQEHIIQYqlpilfNRDKIGLVILDSVASNYRAElrynrskshFRDLDNIAKR 234
Cdd:TIGR02236 156 DPDEVLKNIYVARAYNSNHQMLL--VEKAEDLIKE------LNNPVKLLIVDSLTSHFRAE---------YVGRGALAER 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 235 GNQLGKLAMTLRTLAHQHEAAVVIANQVSDRiPrdyDAiglfsldyqsqwFSGwddtdpNPKIPSLGLVWTNNISTRLAL 314
Cdd:TIGR02236 219 QQKLNKHLHDLLRLADLYNAAVVVTNQVMAR-P---DA------------FFG------DPTRPIGGHILGHAATFRVYL 276
|
250 260 270
....*....|....*....|....*....|....*..
gi 19114539 315 IKktdsaTNNSGRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:TIGR02236 277 RK-----GKGDKRIARLVDSPHLPEGEAVFRITEKGI 308
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
72-282 |
2.97e-25 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 101.48 E-value: 2.97e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 72 SKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQlcLMVQLPLSlggmNKAAVFISTEsGLETKRLFELAryl 151
Cdd:PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQ--LAVEAAKN----GKKVIYIDTE-GLSPERFKQIA--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 152 pERYPKADKKDIIIKNPGdrvytilcpDLESQEHIIQYQLPILfnRDKIGLVILDSVASNYRAELrynrskshfRDLDNI 231
Cdd:PRK09361 72 -GEDFEELLSNIIIFEPS---------SFEEQSEAIRKAEKLA--KENVGLIVLDSATSLYRLEL---------EDEEDN 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 19114539 232 AKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDRIPRDYD-AIGLFSLDYQS 282
Cdd:PRK09361 131 SKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLrPLGGHTLEHWS 182
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
75-282 |
8.51e-23 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 94.69 E-value: 8.51e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVqlpLSLGgmnKAAVFISTEsGLETKRLFELARYLPER 154
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA---AKQG---KKVVYIDTE-GLSPERFQQIAGERFES 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 ypkaDKKDIIIKNPGdrvytilcpDLESQEHIIQyQLPILFNRDKIGLVILDSVASNYRAELRynrskshfRDLDNIAKR 234
Cdd:cd01394 74 ----IASNIIVFEPY---------SFDEQGVAIQ-EAEKLLKSDKVDLVVVDSATALYRLELG--------DDSEANREL 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 19114539 235 GNQLGKLAmtlrTLAHQHEAAVVIANQVSDRIPRDYD-AIGLFSLDYQS 282
Cdd:cd01394 132 SRQMSKLL----SIARKYDIPVVITNQVYSDIDDDRLkPVGGTLLEHWS 176
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
75-351 |
6.33e-22 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 94.84 E-value: 6.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpER 154
Cdd:PLN03187 108 ITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA----ER 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 Y---PKADKKDIIIKnpgdRVYTIlcpdlESQEHIIqYQLPILFNRDKIGLVILDSVASNYRAElrynrskshFRDLDNI 231
Cdd:PLN03187 184 FgmdADAVLDNIIYA----RAYTY-----EHQYNLL-LGLAAKMAEEPFRLLIVDSVIALFRVD---------FTGRGEL 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 232 AKRGNQLGKLAMTLRTLAHQHEAAVVIANQV-SDriprdyDAIGLFSLDyqsqwfsgwddtdpnPKIPSLGLVWTNNIST 310
Cdd:PLN03187 245 AERQQKLAQMLSRLTKIAEEFNVAVYMTNQViAD------PGGGMFISD---------------PKKPAGGHVLAHAATI 303
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 19114539 311 RLALIKKTDSAtnnsgRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:PLN03187 304 RLMLRKGKGEQ-----RVCKVFDAPNLPEAEAEFQITSGGI 339
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
75-351 |
5.55e-21 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 90.11 E-value: 5.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpER 154
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIA----ER 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 Y---PKADKKDIIIKnpgdRVYTilcpdlesQEHIIQY--QLPILFNRDKI-GLVILDSVASNYRAElrynrskshFRDL 228
Cdd:cd19514 77 FgvdHDAVLDNILYA----RAYT--------SEHQMELldYVAAKFHEEAVfRLLIIDSIMALFRVD---------FSGR 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 229 DNIAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSdripRDYDAIGLFSLDyqsqwfsgwddtdpnPKIPSLGLVWTNNI 308
Cdd:cd19514 136 GELAERQQKLAQMLSRLQKISEEYNVAVFITNQVT----ADPGAAMTFQAD---------------PKKPIGGHILAHAS 196
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 19114539 309 STRLALIK-KTDSatnnsgRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:cd19514 197 TTRISLRKgRGEE------RIAKIYDSPDLPENEATFAITAGGI 234
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
88-327 |
9.85e-21 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 88.85 E-value: 9.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 88 GGIPVGQLTEICGESGSGKSQFCMQLCLMVQLplslgGMNKAAVFISTESGLETKRLFEL--ARYLPERYPKADKKDIII 165
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAANVAS-----RSGQNVLYIDTKSSFSARRLAQIlkSRAQDAEEIDKALQRIRV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 166 KNPGDrVYTIlcpdLESQEHII-QYQLPILFNRDKIGLVILDSVASNYrAELRYNRSKSHFRDLdniakrgnqLGKLAMT 244
Cdd:cd19489 77 VRVFD-PYEL----LDLLEELRnTLSQQQENLYSRLKLVIIDSLSALI-SPLLGGSKHSEGHAL---------LASLARL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 245 LRTLAHQHEAAVVIANQVsdriprdydaiglfsldyqsqwFSGWDDTDPNPKIPSLGLVWTNNISTRLALIKKTDSATNN 324
Cdd:cd19489 142 LKKLAAEYQIAVLVTNLT----------------------VRGGDGGQQGSTKPALGEYWESVPSTRLLLSRDENDPEES 199
|
...
gi 19114539 325 SGR 327
Cdd:cd19489 200 GVC 202
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
75-351 |
9.80e-20 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 88.30 E-value: 9.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKAAVFISTESGLETKRLFELArylpER 154
Cdd:TIGR02238 78 ITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA----ER 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 155 Y---PKADKKDIIIKnpgdRVYTilcpdlesQEHIIQY--QLPILFNRDKIGLVILDSVASNYRAElrynrskshFRDLD 229
Cdd:TIGR02238 154 FgvdPDAVLDNILYA----RAYT--------SEHQMELldYLAAKFSEEPFRLLIVDSIMALFRVD---------FSGRG 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 230 NIAKRGNQLGKLAMTLRTLAHQHEAAVVIANQVSDriprDYDAIGLFSldyqsqwfsgwddtdPNPKIPSLGLVWTNNIS 309
Cdd:TIGR02238 213 ELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQA----DPGATMTFI---------------ADPKKPIGGHVLAHAST 273
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 19114539 310 TRLALIK-KTDSatnnsgRIFRVVYSPNSPRLDVRICIGSVGI 351
Cdd:TIGR02238 274 TRILLRKgRGEE------RVAKLYDSPDMPEAEASFQITEGGI 310
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
93-261 |
9.01e-12 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 63.91 E-value: 9.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 93 GQLTEICGESGSGKSQFCMQLCLMVQLP-----LSLGGMNKAAVFISTESGLETKRLFELAR-YLPERYPKADKKDI--- 163
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARCILPsswggVPLGGLEAAVVFIDTDGRFDILRLRSILEaRIRAAIQAANSSDDeed 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 164 ---IIKNPGDRVYTILCPDLESQEHIIQYqLPILFNRD----KIGLVILDSVASNYRAElRYNrskshfRDLDNIAKRGN 236
Cdd:cd19490 81 veeIARECLQRLHIFRCHSSLQLLATLLS-LENYLLSLsanpELGLLLIDSISAFYWQD-RFS------AELARAAPLLQ 152
|
170 180
....*....|....*....|....*..
gi 19114539 237 QLG--KLAMTLRTLAHQHEAAVVIANQ 261
Cdd:cd19490 153 EAAlrAILRELRRLRRRFQLVVIATKQ 179
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
75-234 |
7.92e-08 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 52.23 E-value: 7.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLcLMVQLplslgGMNKAAVFISTESGLEtkRLFELARYL--- 151
Cdd:COG0467 2 VPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQF-LAEGL-----RRGEKGLYVSFEESPE--QLLRRAESLgld 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 152 PERYPKADKKDIIiknpgDRVYTILCPDLEsqEHIIqyQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNI 231
Cdd:COG0467 74 LEEYIESGLLRII-----DLSPEELGLDLE--ELLA--RLREAVEEFGAKRVVIDSLSGLLLALPDPERLREFLHRLLRY 144
|
...
gi 19114539 232 AKR 234
Cdd:COG0467 145 LKK 147
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
82-137 |
5.64e-07 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 49.94 E-value: 5.64e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 19114539 82 LDETLHGGIPVGQLTEICGESGSGKSQFCMQLclmvqLPLSLGGMNKAAVFISTES 137
Cdd:pfam06745 8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQF-----LYNGALKYGEPGVFVTLEE 58
|
|
| KaiC-N |
cd19485 |
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ... |
75-217 |
6.85e-07 |
|
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410893 [Multi-domain] Cd Length: 226 Bit Score: 49.67 E-value: 6.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLcLMVQLPLSlggmNKAAVFISTESGLETKRL------FELA 148
Cdd:cd19485 1 LPTGIEGFDDITHGGLPKGRPTLICGTAGTGKTLFAAQF-LVNGIKEF----GEPGVFVTFEESPEDIIKnmasfgWDLP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 149 RYLPErypkadkkdiiiknpGDRVYTILCPDLESQEHIIQYQLPILFNR-----DKIGL--VILDSV---------ASNY 212
Cdd:cd19485 76 KLVAE---------------GKLLILDASPEPSEEEVTGEYDLEALLIRieyaiRKIGAkrVSLDSLeavfsglsdSAVV 140
|
....*
gi 19114539 213 RAELR 217
Cdd:cd19485 141 RAELL 145
|
|
| PRK06067 |
PRK06067 |
flagellar accessory protein FlaH; Validated |
75-137 |
1.55e-06 |
|
flagellar accessory protein FlaH; Validated
Pssm-ID: 180381 Cd Length: 234 Bit Score: 48.43 E-value: 1.55e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLClmvqlplsLGGMN--KAAVFISTES 137
Cdd:PRK06067 7 ISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFV--------YGALKqgKKVYVITTEN 63
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
75-237 |
2.20e-06 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 48.03 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLcLMVQLPlslggMNKAAVFISTESGLEtkRLFELARYL--P 152
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKTLFGLQF-LYAGAK-----NGEPGLFFTFEESPE--RLLRNAKSFgwD 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 153 ERYPKADKKDIIIKNPGDRVYTILCPDL-ESQEHIIQyqlpilfnRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNI 231
Cdd:cd01124 73 FDEMEDEGKLIIVDAPPTEAGRFSLDELlSRILSIIK--------SFKAKRVVIDSLSGLRRAKEDQMRARRIVIALLNE 144
|
....*.
gi 19114539 232 AKRGNQ 237
Cdd:cd01124 145 LRAAGV 150
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
76-139 |
3.47e-06 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 48.24 E-value: 3.47e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19114539 76 TTGDVKLDETL-HGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLplsLGGMnkaAVFISTESGL 139
Cdd:COG0468 45 STGSLALDIALgVGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK---AGGI---AAFIDAEHAL 103
|
|
| FlaH |
COG2874 |
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility]; |
73-137 |
1.71e-05 |
|
Archaellum biogenesis ATPase ArlH/FlaH [Cell motility];
Pssm-ID: 442121 Cd Length: 230 Bit Score: 45.59 E-value: 1.71e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19114539 73 KYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLmvqlplslgGM---NKAAVFISTES 137
Cdd:COG2874 1 EIISTGNDELDKRLGGGIPLGSLVLIEGENGTGKSVLSQQFAY---------GAlenGLSVTYISTEL 59
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
77-112 |
1.77e-04 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 43.33 E-value: 1.77e-04
10 20 30
....*....|....*....|....*....|....*.
gi 19114539 77 TGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQ 112
Cdd:PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQ 50
|
|
| PRK08533 |
PRK08533 |
flagellar accessory protein FlaH; Reviewed |
82-113 |
1.11e-03 |
|
flagellar accessory protein FlaH; Reviewed
Pssm-ID: 181459 Cd Length: 230 Bit Score: 40.05 E-value: 1.11e-03
10 20 30
....*....|....*....|....*....|..
gi 19114539 82 LDETLHGGIPVGQLTEICGESGSGKSQFCMQL 113
Cdd:PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRL 44
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
86-234 |
1.77e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 38.90 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114539 86 LHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGMNKA-----AVFISTESGLET--KRLFELARYL--PERYP 156
Cdd:pfam13481 26 IKGLLPAGGLGLLAGAPGTGKTTLALDLAAAVATGKPWLGGPRVpeqgkVLYVSAEGPADElrRRLRAAGADLdlPARLL 105
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19114539 157 KADKKDIIIKNPGDRVYTILCPDLESQEHIIQYqlpilfnRDKIGLVILDSVASNYRAELRYNRSKSHF-RDLDNIAKR 234
Cdd:pfam13481 106 FLSLVESLPLFFLDRGGPLLDADVDALEAALEE-------VEDPDLVVIDPLARALGGDENSNSDVGRLvKALDRLARR 177
|
|
| circ_KaiC |
TIGR02655 |
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, ... |
75-113 |
2.23e-03 |
|
circadian clock protein KaiC; Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. [Cellular processes, Other]
Pssm-ID: 131703 [Multi-domain] Cd Length: 484 Bit Score: 39.93 E-value: 2.23e-03
10 20 30
....*....|....*....|....*....|....*....
gi 19114539 75 LTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQL 113
Cdd:TIGR02655 3 IRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 41
|
|
| |
