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Conserved domains on  [gi|19114709|ref|NP_593797|]
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mitochondrial 37S ribosomal protein uS14m [Schizosaccharomyces pombe]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 10446592)

uS14 family ribosomal protein similar to Homo sapiens mitochondrial 28S ribosomal protein S14 and Saccharomyces cerevisiae mitochondrial 37S ribosomal protein MRP2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 54-104 1.40e-20

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


:

Pssm-ID: 459734  Cd Length: 54  Bit Score: 77.45  E-value: 1.40e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 19114709    54 ALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKAS 104
Cdd:pfam00253   4 KLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
 
Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 54-104 1.40e-20

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 77.45  E-value: 1.40e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 19114709    54 ALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKAS 104
Cdd:pfam00253   4 KLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 34-105 3.53e-19

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 75.19  E-value: 3.53e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19114709   34 IYRNPELPLRVRLEAKKRIEALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:PRK08881  30 IISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 61-105 1.04e-14

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 62.72  E-value: 1.04e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 19114709  61 PTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:COG0199  16 PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
 
Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 54-104 1.40e-20

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 77.45  E-value: 1.40e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 19114709    54 ALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKAS 104
Cdd:pfam00253   4 KLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 34-105 3.53e-19

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 75.19  E-value: 3.53e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19114709   34 IYRNPELPLRVRLEAKKRIEALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:PRK08881  30 IISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101
rps14 CHL00074
ribosomal protein S14
 45-105 5.10e-16

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 67.14  E-value: 5.10e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19114709   45 RLEAKKRIEALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:CHL00074  40 KWEIHGKLQSLPRNSAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 61-105 1.04e-14

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 62.72  E-value: 1.04e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 19114709  61 PTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:COG0199  16 PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
rpsN PRK08061
type Z 30S ribosomal protein S14;
61-105 1.67e-09

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 49.49  E-value: 1.67e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 19114709   61 PTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:PRK08061  17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 42-105 5.86e-09

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 49.29  E-value: 5.86e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19114709   42 LRVRLEAKKRIEALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105
Cdd:PRK06911  37 FQVIMESQAKLAKLPVNSNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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