protein Cwf21 [Schizosaccharomyces pombe]
pre-mRNA-splicing factor CWC21( domain architecture ID 15347360)
pre-mRNA-splicing factor CWC21 is involved in pre-mRNA splicing
List of domain hits
Name | Accession | Description | Interval | E-value | |||
cwf21_CWC21-like | cd21372 | cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ... |
51-139 | 7.46e-05 | |||
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. : Pssm-ID: 410599 [Multi-domain] Cd Length: 49 Bit Score: 39.38 E-value: 7.46e-05
|
|||||||
U2AF_lg super family | cl36941 | U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
168-277 | 1.95e-03 | |||
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. The actual alignment was detected with superfamily member TIGR01642: Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 39.49 E-value: 1.95e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
cwf21_CWC21-like | cd21372 | cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ... |
51-139 | 7.46e-05 | |||
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Pssm-ID: 410599 [Multi-domain] Cd Length: 49 Bit Score: 39.38 E-value: 7.46e-05
|
|||||||
U2AF_lg | TIGR01642 | U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
168-277 | 1.95e-03 | |||
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 39.49 E-value: 1.95e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
cwf21_CWC21-like | cd21372 | cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ... |
51-139 | 7.46e-05 | |||
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Pssm-ID: 410599 [Multi-domain] Cd Length: 49 Bit Score: 39.38 E-value: 7.46e-05
|
|||||||
U2AF_lg | TIGR01642 | U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
168-277 | 1.95e-03 | |||
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 39.49 E-value: 1.95e-03
|
|||||||
Blast search parameters | ||||
|