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Conserved domains on  [gi|19114852|ref|NP_593940|]
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rRNA processing protein Faf1 [Schizosaccharomyces pombe]

Protein Classification

DUF4602 domain-containing protein( domain architecture ID 141151)

DUF4602 domain-containing protein similar to Schizosaccharomyces pombe protein C3F10.08c

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4602 super family cl21213
Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins ...
 127-232 2.64e-04

Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in this family are typically between 173 and 294 amino acids in length. This family includes Human C1orf131.


The actual alignment was detected with superfamily member pfam15375:

Pssm-ID: 464683  Cd Length: 111  Bit Score: 39.59  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114852   127 SDDDEVENLKNDLELQKLLRESHLLHEATSRTGQvqlvaegkiRHKVVQQHIAQLGGKKE-TEKMPMAARRGMKKKQKHI 205
Cdd:pfam15375   9 KKEEEEENLRQEFDLKKARKEVHNFGISGLDKKN---------KRKAEAERAIKLGAKPPkKPYVPYKILQGMKKKQKER 79

                          90       100
                  ....*....|....*....|....*..
gi 19114852   206 EKVIENEARESGTVLAKKRKERKQFKK 232
Cdd:pfam15375  80 EEERKQEAKESGVQTGKKKSKKKKKKR 106
 
Name Accession Description Interval E-value
DUF4602 pfam15375
Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins ...
 127-232 2.64e-04

Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in this family are typically between 173 and 294 amino acids in length. This family includes Human C1orf131.


Pssm-ID: 464683  Cd Length: 111  Bit Score: 39.59  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114852   127 SDDDEVENLKNDLELQKLLRESHLLHEATSRTGQvqlvaegkiRHKVVQQHIAQLGGKKE-TEKMPMAARRGMKKKQKHI 205
Cdd:pfam15375   9 KKEEEEENLRQEFDLKKARKEVHNFGISGLDKKN---------KRKAEAERAIKLGAKPPkKPYVPYKILQGMKKKQKER 79

                          90       100
                  ....*....|....*....|....*..
gi 19114852   206 EKVIENEARESGTVLAKKRKERKQFKK 232
Cdd:pfam15375  80 EEERKQEAKESGVQTGKKKSKKKKKKR 106
 
Name Accession Description Interval E-value
DUF4602 pfam15375
Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins ...
 127-232 2.64e-04

Domain of unknown function (DUF4602); This family of proteins is found in eukaryotes. Proteins in this family are typically between 173 and 294 amino acids in length. This family includes Human C1orf131.


Pssm-ID: 464683  Cd Length: 111  Bit Score: 39.59  E-value: 2.64e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19114852   127 SDDDEVENLKNDLELQKLLRESHLLHEATSRTGQvqlvaegkiRHKVVQQHIAQLGGKKE-TEKMPMAARRGMKKKQKHI 205
Cdd:pfam15375   9 KKEEEEENLRQEFDLKKARKEVHNFGISGLDKKN---------KRKAEAERAIKLGAKPPkKPYVPYKILQGMKKKQKER 79

                          90       100
                  ....*....|....*....|....*..
gi 19114852   206 EKVIENEARESGTVLAKKRKERKQFKK 232
Cdd:pfam15375  80 EEERKQEAKESGVQTGKKKSKKKKKKR 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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