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Conserved domains on  [gi|19115746|ref|NP_594834|]
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RNA polymerase I upstream activation factor complex subunit Rrn10 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UAF_Rrn10 super family cl05004
UAF complex subunit Rrn10; The protein Rrn10 has been identified as a component of the ...
 3-97 2.73e-48

UAF complex subunit Rrn10; The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor


The actual alignment was detected with superfamily member pfam05234:

Pssm-ID: 113985  Cd Length: 122  Bit Score: 149.58  E-value: 2.73e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115746     3 NPPTRPTLYNLVNADGELSYRARDLVQ---DFSVPIP----HEL-----PD-----------PDL-VHSIQDFATEYMLA 58
Cdd:pfam05234   4 NPPTREACSNIIKADGEHSVRADDLLAekiDFAVPIPfktrEEIdadveKDrnegvfegniiPDIdLHSIHDFATELCLA 83

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 19115746    59 TGKKSFECLDESALLGLGYLVTEWMDAMVTDCLEEFEER 97
Cdd:pfam05234  84 KGKHLFEAFDESALIGLGLLIEEWMDAMLTDCLEEFEEQ 122
 
Name Accession Description Interval E-value
UAF_Rrn10 pfam05234
UAF complex subunit Rrn10; The protein Rrn10 has been identified as a component of the ...
 3-97 2.73e-48

UAF complex subunit Rrn10; The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor


Pssm-ID: 113985  Cd Length: 122  Bit Score: 149.58  E-value: 2.73e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115746     3 NPPTRPTLYNLVNADGELSYRARDLVQ---DFSVPIP----HEL-----PD-----------PDL-VHSIQDFATEYMLA 58
Cdd:pfam05234   4 NPPTREACSNIIKADGEHSVRADDLLAekiDFAVPIPfktrEEIdadveKDrnegvfegniiPDIdLHSIHDFATELCLA 83

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 19115746    59 TGKKSFECLDESALLGLGYLVTEWMDAMVTDCLEEFEER 97
Cdd:pfam05234  84 KGKHLFEAFDESALIGLGLLIEEWMDAMLTDCLEEFEEQ 122
 
Name Accession Description Interval E-value
UAF_Rrn10 pfam05234
UAF complex subunit Rrn10; The protein Rrn10 has been identified as a component of the ...
 3-97 2.73e-48

UAF complex subunit Rrn10; The protein Rrn10 has been identified as a component of the Upstream Activating Factor (UAF), an RNA polymerase I (pol I) specific transcription stimulatory factor


Pssm-ID: 113985  Cd Length: 122  Bit Score: 149.58  E-value: 2.73e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19115746     3 NPPTRPTLYNLVNADGELSYRARDLVQ---DFSVPIP----HEL-----PD-----------PDL-VHSIQDFATEYMLA 58
Cdd:pfam05234   4 NPPTREACSNIIKADGEHSVRADDLLAekiDFAVPIPfktrEEIdadveKDrnegvfegniiPDIdLHSIHDFATELCLA 83

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 19115746    59 TGKKSFECLDESALLGLGYLVTEWMDAMVTDCLEEFEER 97
Cdd:pfam05234  84 KGKHLFEAFDESALIGLGLLIEEWMDAMLTDCLEEFEEQ 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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