NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19112546|ref|NP_595754|]
View 

anaphase-promoting complex TPR lobe accessory factor Apc13 [Schizosaccharomyces pombe]

Protein Classification

Apc13p domain-containing protein( domain architecture ID 10530770)

Apc13p domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 1-87 7.29e-37

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


:

Pssm-ID: 310437  Cd Length: 89  Bit Score: 121.14  E-value: 7.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112546     1 MDSNYNYVHMNKPGVVLFASDWLKDRLPVDDVEVRVEHLPPVTED--EMTIQHSSANLILMKNKQLRHEPAWKDLELEDL 78
Cdd:pfam05839   1 MDSYFTYVHLDAPHHDLLDDAWRKDRLPPDDVAVPMPHLQPVNPEdeEDVVPDPEADNGIQKETQKEQEPAWTDLALEEL 80


                  ....*....
gi 19112546    79 VNAFAFIQG 87
Cdd:pfam05839  81 MSNGPGIGG 89
 
Name Accession Description Interval E-value
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 1-87 7.29e-37

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


Pssm-ID: 310437  Cd Length: 89  Bit Score: 121.14  E-value: 7.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112546     1 MDSNYNYVHMNKPGVVLFASDWLKDRLPVDDVEVRVEHLPPVTED--EMTIQHSSANLILMKNKQLRHEPAWKDLELEDL 78
Cdd:pfam05839   1 MDSYFTYVHLDAPHHDLLDDAWRKDRLPPDDVAVPMPHLQPVNPEdeEDVVPDPEADNGIQKETQKEQEPAWTDLALEEL 80


                  ....*....
gi 19112546    79 VNAFAFIQG 87
Cdd:pfam05839  81 MSNGPGIGG 89
 
Name Accession Description Interval E-value
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 1-87 7.29e-37

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


Pssm-ID: 310437  Cd Length: 89  Bit Score: 121.14  E-value: 7.29e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112546     1 MDSNYNYVHMNKPGVVLFASDWLKDRLPVDDVEVRVEHLPPVTED--EMTIQHSSANLILMKNKQLRHEPAWKDLELEDL 78
Cdd:pfam05839   1 MDSYFTYVHLDAPHHDLLDDAWRKDRLPPDDVAVPMPHLQPVNPEdeEDVVPDPEADNGIQKETQKEQEPAWTDLALEEL 80


                  ....*....
gi 19112546    79 VNAFAFIQG 87
Cdd:pfam05839  81 MSNGPGIGG 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH