|
Name |
Accession |
Description |
Interval |
E-value |
| CUE_Cue5p_like |
cd14372 |
CUE domain found in yeast ubiquitin-binding protein CUE5 (Cue5p), donuts protein 1 (DON1p) and ... |
17-61 |
6.40e-17 |
|
CUE domain found in yeast ubiquitin-binding protein CUE5 (Cue5p), donuts protein 1 (DON1p) and similar proteins; Cue5p, also called coupling of ubiquitin conjugation to ER degradation protein 5, is encoded by the open reading frame (ORF) Yor042. It contains a CUE domain which exhibits weak ubiquitin binding properties. Donuts protein 1 (DON1p) is encoded by the ORF YDR273w. It localizes specifically to the prospore membrane and is expressed exclusively during meiosis. DON1p may function as a unique marker to investigate the defects associated with the impaired function of the meiotic plaque in the mpc- mutants.
Pssm-ID: 270555 Cd Length: 45 Bit Score: 74.60 E-value: 6.40e-17
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 19112576 17 MAEKARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLSDP 61
Cdd:cd14372 1 EQESAIKILKEAFPDVDDKVIKAILIASQGDLEPAFNALLGLTDP 45
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
304-568 |
3.83e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 56.54 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 304 DLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARtletvSEEQMGSSNAKSK-VLTSEPKDSTSVEaekTETD 382
Cdd:TIGR00927 629 DLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQ-----EGETETKGENESEgEIPAERKGEQEGE---GEIE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 383 EPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDvGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKE 462
Cdd:TIGR00927 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE-GEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 463 TDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETdsievDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNK--EA 540
Cdd:TIGR00927 780 EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHE-----GQSETQADDTEVKDETGEQELNAENQGEAKQDEKgvDG 854
|
250 260
....*....|....*....|....*...
gi 19112576 541 NEKAEKVDSKDVKEKIEEAADLQNSGKE 568
Cdd:TIGR00927 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
315-561 |
9.64e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 9.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 315 MKKDTSKPTASTKEVVVEKKPDESRKqaartletvSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVS 394
Cdd:PTZ00121 1272 IKAEEARKADELKKAEEKKKADEAKK---------AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 395 DTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEK----DTKITNEDTGKTETDVKAKETDSIEAND 470
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadEAKKKAEEDKKKADELKKAAAAKKKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 471 KDEKTDSKETEDKV-----EETESKEADVKAKETDSIEVDDK--EEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEK 543
Cdd:PTZ00121 1423 AKKKAEEKKKADEAkkkaeEAKKADEAKKKAEEAKKAEEAKKkaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250
....*....|....*...
gi 19112576 544 AEKVDSKDVKEKIEEAAD 561
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEE 1520
|
|
| CUE |
pfam02845 |
CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE ... |
24-59 |
1.68e-07 |
|
CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2.
Pssm-ID: 427018 Cd Length: 42 Bit Score: 47.47 E-value: 1.68e-07
10 20 30
....*....|....*....|....*....|....*.
gi 19112576 24 TLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLS 59
Cdd:pfam02845 7 TLKEMFPDLDEEVIRAVLEASNGNVEAAINALLEGS 42
|
|
| CUE |
smart00546 |
Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also ... |
19-59 |
2.78e-07 |
|
Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Pssm-ID: 214715 Cd Length: 43 Bit Score: 47.10 E-value: 2.78e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 19112576 19 EKARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLS 59
Cdd:smart00546 3 DEALHDLKEMFPNLDEEVIEAVLEANTGNVEATINNLLEGS 43
|
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
305-549 |
3.93e-05 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 46.63 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDEsrKQAARTLETVSEEQmgssnakskvltsepkdsTSVEAEKTETDEP 384
Cdd:NF033875 69 PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAE--QSSATPNDTTNAQQ------------------PTVGAEKSAQEQP 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 385 AVgkgaSDVSDTAEISEKTEAKNADSEANleEKSDVGEEKESKDENNKAslhkDVEEKDTKIT-----NEDTGKTET-DV 458
Cdd:NF033875 129 VV----SPETTNEPLGQPTEVAPAENEAN--KSTSIPKEFETPDVDKAV----DEAKKDPNITvvekpAEDLGNVSSkDL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 459 KAKETDSieanDKDEKTDSKETEDKVEETESKEADVkAKETDSIEVDDKEEKTD-SKETADKVEQTDSKDTNEKPAKDD- 536
Cdd:NF033875 199 AAKEKEV----DQLQKEQAKKIAQQAAELKAKNEKI-AKENAEIAAKNKAEKERyEKEVAEYNKHKNENGYVNEAISKNl 273
|
250
....*....|....*
gi 19112576 537 --NKEANEKAEKVDS 549
Cdd:NF033875 274 vfDQSVVTKDTKISS 288
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
331-549 |
5.86e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.06 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 331 VEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADS 410
Cdd:NF033609 554 IEPIPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASD-SDSASDSDSASDSDSAS 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 411 EANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKA-KETDSIEANDKDEKTDSKETEDKVEETES 489
Cdd:NF033609 633 DSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 712
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 490 KEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDS 549
Cdd:NF033609 713 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 772
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
302-565 |
9.71e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.29 E-value: 9.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 302 DSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTET 381
Cdd:NF033609 601 ASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 382 DEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKA- 460
Cdd:NF033609 681 DSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSd 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 461 KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEA 540
Cdd:NF033609 760 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 839
|
250 260
....*....|....*....|....*
gi 19112576 541 NEKAEKVDSKDVKEKIEEAADLQNS 565
Cdd:NF033609 840 SDSDSDSDSDSDSDSDSESDSNSDS 864
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
286-551 |
1.67e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 44.51 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 286 DSNGAIEVANSAFALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLT 365
Cdd:NF033609 641 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 366 SEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTK 445
Cdd:NF033609 721 DSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 446 ITNEDTGKTETDvKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDS 525
Cdd:NF033609 800 SDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPPNSP 878
|
250 260
....*....|....*....|....*.
gi 19112576 526 KDTNEKPAKDDNKEANEKAEKVDSKD 551
Cdd:NF033609 879 KNGTNASNKNEAKDSKEPLPDTGSED 904
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
286-549 |
1.86e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 44.51 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 286 DSNGAIEVANSAFALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLT 365
Cdd:NF033609 603 DSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 366 SEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTK 445
Cdd:NF033609 683 DSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 446 ITNEDTGKTETDVKA-KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTD 524
Cdd:NF033609 762 SDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 841
|
250 260
....*....|....*....|....*
gi 19112576 525 SKDTNEKPAKDDNKEANEKAEKVDS 549
Cdd:NF033609 842 SDSDSDSDSDSDSDSESDSNSDSES 866
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
357-569 |
7.08e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 42.59 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 357 SNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLH 436
Cdd:NF033609 610 SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 437 KDVEEKDTKITNEDTGKTETDVKA---KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDS 513
Cdd:NF033609 689 DSDSDSDSDSDSDSDSDSDSDSDSdsdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 768
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 19112576 514 KETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAADLQNSGKET 569
Cdd:NF033609 769 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 824
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
301-569 |
1.37e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 41.82 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 301 DDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTE 380
Cdd:NF033609 572 DSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSD 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 381 TDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDvKA 460
Cdd:NF033609 652 SDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-SD 729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 461 KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEA 540
Cdd:NF033609 730 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 809
|
250 260
....*....|....*....|....*....
gi 19112576 541 NEKAEKVDSKDVKEKIEEAADLQNSGKET 569
Cdd:NF033609 810 SDSDSDSDSDSDSDSDSDSDSDSDSDSDS 838
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
395-563 |
4.49e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.60 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 395 DTAEISEK--TEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDKD 472
Cdd:pfam05262 173 DTDSISDKkvVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 473 EKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKveqtdSKDTNEKPAKDDNKEANEKAEKVDSKDV 552
Cdd:pfam05262 253 KQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALK-----AKDHKAFDLKQESKASEKEAEDKELEAQ 327
|
170
....*....|.
gi 19112576 553 KEKIEEAADLQ 563
Cdd:pfam05262 328 KKREPVAEDLQ 338
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
312-558 |
7.14e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 39.23 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 312 ELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPA--VGKG 389
Cdd:NF033838 189 ELELVKEEAKEPRDEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKrrAKRG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 390 ASDVSDTAEISEKtEAKNADSEanleeksdVGEEkeskdennkaSLHKDVEEKDTKITNEDTGKTETDVKAKETDsiean 469
Cdd:NF033838 269 VLGEPATPDKKEN-DAKSSDSS--------VGEE----------TLPSPSLKPEKKVAEAEKKVEEAKKKAKDQK----- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 470 DKDEKTDSKETEDKVEeTESKEADVKAKETDSIEVddKEEKTDS------KETADKVEQTDSKDTNEKPAKDDNKEANEK 543
Cdd:NF033838 325 EEDRRNYPTNTYKTLE-LEIAESDVKVKEAELELV--KEEAKEPrneekiKQAKAKVESKKAEATRLEKIKTDRKKAEEE 401
|
250
....*....|....*..
gi 19112576 544 AEK--VDSKDVKEKIEE 558
Cdd:NF033838 402 AKRkaAEEDKVKEKPAE 418
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CUE_Cue5p_like |
cd14372 |
CUE domain found in yeast ubiquitin-binding protein CUE5 (Cue5p), donuts protein 1 (DON1p) and ... |
17-61 |
6.40e-17 |
|
CUE domain found in yeast ubiquitin-binding protein CUE5 (Cue5p), donuts protein 1 (DON1p) and similar proteins; Cue5p, also called coupling of ubiquitin conjugation to ER degradation protein 5, is encoded by the open reading frame (ORF) Yor042. It contains a CUE domain which exhibits weak ubiquitin binding properties. Donuts protein 1 (DON1p) is encoded by the ORF YDR273w. It localizes specifically to the prospore membrane and is expressed exclusively during meiosis. DON1p may function as a unique marker to investigate the defects associated with the impaired function of the meiotic plaque in the mpc- mutants.
Pssm-ID: 270555 Cd Length: 45 Bit Score: 74.60 E-value: 6.40e-17
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 19112576 17 MAEKARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLSDP 61
Cdd:cd14372 1 EQESAIKILKEAFPDVDDKVIKAILIASQGDLEPAFNALLGLTDP 45
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
304-568 |
3.83e-08 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 56.54 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 304 DLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARtletvSEEQMGSSNAKSK-VLTSEPKDSTSVEaekTETD 382
Cdd:TIGR00927 629 DLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQ-----EGETETKGENESEgEIPAERKGEQEGE---GEIE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 383 EPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDvGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKE 462
Cdd:TIGR00927 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE-GEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 463 TDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETdsievDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNK--EA 540
Cdd:TIGR00927 780 EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHE-----GQSETQADDTEVKDETGEQELNAENQGEAKQDEKgvDG 854
|
250 260
....*....|....*....|....*...
gi 19112576 541 NEKAEKVDSKDVKEKIEEAADLQNSGKE 568
Cdd:TIGR00927 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
315-561 |
9.64e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 9.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 315 MKKDTSKPTASTKEVVVEKKPDESRKqaartletvSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVS 394
Cdd:PTZ00121 1272 IKAEEARKADELKKAEEKKKADEAKK---------AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 395 DTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEK----DTKITNEDTGKTETDVKAKETDSIEAND 470
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadEAKKKAEEDKKKADELKKAAAAKKKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 471 KDEKTDSKETEDKV-----EETESKEADVKAKETDSIEVDDK--EEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEK 543
Cdd:PTZ00121 1423 AKKKAEEKKKADEAkkkaeEAKKADEAKKKAEEAKKAEEAKKkaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250
....*....|....*...
gi 19112576 544 AEKVDSKDVKEKIEEAAD 561
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEE 1520
|
|
| CUE |
pfam02845 |
CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE ... |
24-59 |
1.68e-07 |
|
CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2.
Pssm-ID: 427018 Cd Length: 42 Bit Score: 47.47 E-value: 1.68e-07
10 20 30
....*....|....*....|....*....|....*.
gi 19112576 24 TLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLS 59
Cdd:pfam02845 7 TLKEMFPDLDEEVIRAVLEASNGNVEAAINALLEGS 42
|
|
| CUE |
smart00546 |
Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also ... |
19-59 |
2.78e-07 |
|
Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Pssm-ID: 214715 Cd Length: 43 Bit Score: 47.10 E-value: 2.78e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 19112576 19 EKARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLS 59
Cdd:smart00546 3 DEALHDLKEMFPNLDEEVIEAVLEANTGNVEATINNLLEGS 43
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
332-539 |
3.26e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 53.07 E-value: 3.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 332 EKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGA-SDVSDTAEISEKTEAKNADS 410
Cdd:PRK05901 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLsGMVKDTDDATESDIPKKKTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 411 EAnleEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESK 490
Cdd:PRK05901 81 TA---AKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 19112576 491 EADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKE 539
Cdd:PRK05901 158 EDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKL 206
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-559 |
1.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGA 390
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 391 SDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEE--KDTKITNEDTGKTETDVKAKETDSIEA 468
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEkkKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 469 NDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVD 548
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
250
....*....|.
gi 19112576 549 SKDVKEKIEEA 559
Cdd:PTZ00121 1654 KAEEENKIKAA 1664
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-559 |
1.21e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSV----EAEKTETDEPAV 386
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIrkfeEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 387 GKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSI 466
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 467 EANDKDEKTDSKETEDKVEETESKEADVKAKETDSievdDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEK 546
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK----KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
|
250
....*....|....*..
gi 19112576 547 VDSK----DVKEKIEEA 559
Cdd:PTZ00121 1427 AEEKkkadEAKKKAEEA 1443
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
314-520 |
6.39e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 48.84 E-value: 6.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 314 EMKKDTSKPTASTKEVVVEKK-------PDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAV 386
Cdd:PRK05901 7 KAELAAEEEAKKKLKKLAAKSkskgfitKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 387 GKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDEnnkaslhKDVEEKDTKITNEDTGKTETDVKAKETDSI 466
Cdd:PRK05901 87 AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ-------ADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 19112576 467 EANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKV 520
Cdd:PRK05901 160 DDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPV 213
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
357-561 |
8.07e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 48.45 E-value: 8.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 357 SNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDvsDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDEnnkaslh 436
Cdd:PRK05901 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKE--EIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATE------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 437 KDVEEKDTKITNEDTGKTETDVKAKeTDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKEt 516
Cdd:PRK05901 72 SDIPKKKTKTAAKAAAAKAPAKKKL-KDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDD- 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 19112576 517 ADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAAD 561
Cdd:PRK05901 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDS 194
|
|
| CUE |
cd14279 |
CUE domain found in ubiquitin-binding CUE proteins; This family includes many coupling of ... |
19-56 |
8.82e-06 |
|
CUE domain found in ubiquitin-binding CUE proteins; This family includes many coupling of ubiquitin conjugation to endoplasmic reticulum degradation (CUE) domain containing proteins that are characterized by an FP and a di-leucine-like sequence and bind to monoubiquitin with varying affinities. Some higher eukaryotic CUE domain proteins do not bind monoubiquitin efficiently, since they carry LP, rather than FP among CUE domains. CUE domains form three-helix bundle structures and are distantly related to the ubiquitin-associated (UBA) domains which are widely occurring ubiquitin-binding motifs found in a broad range of cellular proteins in species ranging from yeast to human. The majority of family members contain one CUE domain, but some family members from fungi harbor two CUE domains.
Pssm-ID: 270465 Cd Length: 38 Bit Score: 42.84 E-value: 8.82e-06
10 20 30
....*....|....*....|....*....|....*...
gi 19112576 19 EKARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALL 56
Cdd:cd14279 1 DEKLEQLQEMFPDLDEEVLEDVLEANNGDVEAAIDALL 38
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-565 |
1.08e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSV-EAEKTETDEPAVGKG 389
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAdEAEAAEEKAEAAEKK 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 390 ASDVSDTAEISEKT--EAKNAD--------SEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVK 459
Cdd:PTZ00121 1373 KEEAKKKADAAKKKaeEKKKADeakkkaeeDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 460 AKETDSIEANDK--DEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDN 537
Cdd:PTZ00121 1453 AEEAKKAEEAKKkaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260
....*....|....*....|....*...
gi 19112576 538 KEANEKAEKVDSKDVKEKIEEAADLQNS 565
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKA 1560
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-559 |
1.11e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKevvveKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPK--DSTSVEAEKTETDEPAVGK 388
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEA-----KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKkaDAAKKKAEEKKKADEAKKK 1399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 389 GASDVSDTAEISEKTEAKNADSEA--NLEEKSDVGEEKESKDENNKA-SLHKDVEEKdtKITNEDTGKTETDVKAKETDs 465
Cdd:PTZ00121 1400 AEEDKKKADELKKAAAAKKKADEAkkKAEEKKKADEAKKKAEEAKKAdEAKKKAEEA--KKAEEAKKKAEEAKKADEAK- 1476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 466 ieaNDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDD--KEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEK 543
Cdd:PTZ00121 1477 ---KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
250
....*....|....*.
gi 19112576 544 AEKVDSKDVKEKIEEA 559
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEA 1569
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
314-559 |
1.13e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 314 EMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDV 393
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 394 SDTAEISEKTEAKNADSEA---------------NLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDV 458
Cdd:PTZ00121 1431 KKADEAKKKAEEAKKADEAkkkaeeakkaeeakkKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 459 KAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSI-EVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDN 537
Cdd:PTZ00121 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
250 260
....*....|....*....|..
gi 19112576 538 KEANEKAEKVDSKDVKEKIEEA 559
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEA 1612
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
355-524 |
1.23e-05 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 48.05 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 355 GSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEE----KSDVGEEKESKDEN 430
Cdd:PRK13108 287 GSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESvvqvADRDGESTPAVEET 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 431 NKASLHKdveekdtkitnEDTGKTETDVKAK-ETDSIEANDKDEKTDSKETEDKvEETESKEADVKAKETDSievdDKEE 509
Cdd:PRK13108 367 SEADIER-----------EQPGDLAGQAPAAhQVDAEAASAAPEEPAALASEAH-DETEPEVPEKAAPIPDP----AKPD 430
|
170
....*....|....*
gi 19112576 510 KTDSKETADKVEQTD 524
Cdd:PRK13108 431 ELAVAGPGDDPAEPD 445
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
301-510 |
1.23e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.45 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 301 DDSDLESAYNEELEMKKDT-SKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKT 379
Cdd:TIGR00927 692 EQEGEGEIEAKEADHKGETeAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETE 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 380 ETDEPAVGKGASDVSDTAEISEKTEAKNAdSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVK 459
Cdd:TIGR00927 772 AEGKEDEDEGEIQAGEDGEMKGDEGAEGK-VEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK 850
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 19112576 460 AKE----TDSIEANDKDEKTDSKETEDKvEETESKEADVKAKETDSIEVDDKEEK 510
Cdd:TIGR00927 851 GVDggggSDGGDSEEEEEEEEEEEEEEE-EEEEEEEEEEENEEPLSLEWPETRQK 904
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
316-559 |
1.52e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 316 KKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVSD 395
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 396 TAEISEKTEAKNADSEANLEEKSD-----VGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEAND 470
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADeakkkAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 471 KDEKTDSKETEDKVEETESKEADVKAKETdsievddkEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANE--KAEKVD 548
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKA--------EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEakKAEEAK 1522
|
250
....*....|.
gi 19112576 549 SKDVKEKIEEA 559
Cdd:PTZ00121 1523 KADEAKKAEEA 1533
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-559 |
1.69e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKEVVVEKKPDESRK----QAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAV 386
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKaeeaKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 387 GKGASDV--SDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETD 464
Cdd:PTZ00121 1580 LRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 465 SIEAndkdEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKA 544
Cdd:PTZ00121 1660 KIKA----AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
250
....*....|....*
gi 19112576 545 EKVDSKDvKEKIEEA 559
Cdd:PTZ00121 1736 KKEAEED-KKKAEEA 1749
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
299-568 |
2.23e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 299 ALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQA--ARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEA 376
Cdd:PTZ00121 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAeeAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 377 EKTETDEpavgkgasdVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTET 456
Cdd:PTZ00121 1276 EARKADE---------LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 457 DVKAKETdsiEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDD 536
Cdd:PTZ00121 1347 AAKAEAE---AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
|
250 260 270
....*....|....*....|....*....|..
gi 19112576 537 NKEANEKAEKVDSKDVKEKIEEAADLQNSGKE 568
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
306-558 |
3.25e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 306 ESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPA 385
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 386 VGKGASDVSDTAEISEKTEAKNADSEANLEEKSDV-----GEEKESKDENNKASLHKDVEE--KDTKITNEDTGKTETDV 458
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAdeakkAEEKKKADELKKAEELKKAEEkkKAEEAKKAEEDKNMALR 1581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 459 KAKETDSIEANDKDEKTDSKETEDKVEETESK---EADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKD 535
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKkaeEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
250 260
....*....|....*....|...
gi 19112576 536 DNKEANEKAEKVDSKDVKEKIEE 558
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAE 1684
|
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
305-549 |
3.93e-05 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 46.63 E-value: 3.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDEsrKQAARTLETVSEEQmgssnakskvltsepkdsTSVEAEKTETDEP 384
Cdd:NF033875 69 PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAE--QSSATPNDTTNAQQ------------------PTVGAEKSAQEQP 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 385 AVgkgaSDVSDTAEISEKTEAKNADSEANleEKSDVGEEKESKDENNKAslhkDVEEKDTKIT-----NEDTGKTET-DV 458
Cdd:NF033875 129 VV----SPETTNEPLGQPTEVAPAENEAN--KSTSIPKEFETPDVDKAV----DEAKKDPNITvvekpAEDLGNVSSkDL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 459 KAKETDSieanDKDEKTDSKETEDKVEETESKEADVkAKETDSIEVDDKEEKTD-SKETADKVEQTDSKDTNEKPAKDD- 536
Cdd:NF033875 199 AAKEKEV----DQLQKEQAKKIAQQAAELKAKNEKI-AKENAEIAAKNKAEKERyEKEVAEYNKHKNENGYVNEAISKNl 273
|
250
....*....|....*
gi 19112576 537 --NKEANEKAEKVDS 549
Cdd:NF033875 274 vfDQSVVTKDTKISS 288
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
331-549 |
5.86e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.06 E-value: 5.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 331 VEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADS 410
Cdd:NF033609 554 IEPIPEDSDSDPGSDSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASD-SDSASDSDSASDSDSAS 632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 411 EANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKA-KETDSIEANDKDEKTDSKETEDKVEETES 489
Cdd:NF033609 633 DSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 712
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 490 KEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDS 549
Cdd:NF033609 713 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 772
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
302-565 |
9.71e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.29 E-value: 9.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 302 DSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTET 381
Cdd:NF033609 601 ASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 382 DEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKA- 460
Cdd:NF033609 681 DSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSd 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 461 KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEA 540
Cdd:NF033609 760 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 839
|
250 260
....*....|....*....|....*
gi 19112576 541 NEKAEKVDSKDVKEKIEEAADLQNS 565
Cdd:NF033609 840 SDSDSDSDSDSDSDSDSESDSNSDS 864
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
286-551 |
1.67e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 44.51 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 286 DSNGAIEVANSAFALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLT 365
Cdd:NF033609 641 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 366 SEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTK 445
Cdd:NF033609 721 DSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 446 ITNEDTGKTETDvKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDS 525
Cdd:NF033609 800 SDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPPNSP 878
|
250 260
....*....|....*....|....*.
gi 19112576 526 KDTNEKPAKDDNKEANEKAEKVDSKD 551
Cdd:NF033609 879 KNGTNASNKNEAKDSKEPLPDTGSED 904
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
286-549 |
1.86e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 44.51 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 286 DSNGAIEVANSAFALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLT 365
Cdd:NF033609 603 DSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 366 SEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTK 445
Cdd:NF033609 683 DSDSDSDSDSDSDSDSDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 446 ITNEDTGKTETDVKA-KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTD 524
Cdd:NF033609 762 SDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 841
|
250 260
....*....|....*....|....*
gi 19112576 525 SKDTNEKPAKDDNKEANEKAEKVDS 549
Cdd:NF033609 842 SDSDSDSDSDSDSDSESDSNSDSES 866
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-568 |
2.33e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAvGKGA 390
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA-KKKA 1466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 391 SDVSDTAEISEKTEAKNADSEANL---EEKSDVGEEKESKDENNKASLHKDVEEKDTKitnEDTGKTETDVKAKETDSIE 467
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKkaeEAKKKADEAKKAAEAKKKADEAKKAEEAKKA---DEAKKAEEAKKADEAKKAE 1543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 468 ANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKV 547
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
250 260
....*....|....*....|.
gi 19112576 548 DSKDVKEKIEEAADLQNSGKE 568
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAE 1644
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
357-569 |
7.08e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 42.59 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 357 SNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLH 436
Cdd:NF033609 610 SDSASDSDSASDSDSASDSDSASDSDSASDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 437 KDVEEKDTKITNEDTGKTETDVKA---KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDS 513
Cdd:NF033609 689 DSDSDSDSDSDSDSDSDSDSDSDSdsdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 768
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 19112576 514 KETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEKIEEAADLQNSGKET 569
Cdd:NF033609 769 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 824
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-559 |
7.61e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 7.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 311 EELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLEtvSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGA 390
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK--KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 391 SDVSDTAEISEKTEAKNADSEANLEE----------KSDVGEEKESKDENNKASLHKDVEEKD--TKITNEDTGKTETDV 458
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEElkkaeeenkiKAEEAKKEAEEDKKKAEEAKKDEEEKKkiAHLKKEEEKKAEEIR 1774
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 459 KAKETDSIEANDKDEKTDSKETEDKVEETES---------KEADVKAKETDSIEVDDKEEKTDSK----ETADKVEQTDS 525
Cdd:PTZ00121 1775 KEKEAVIEEELDEEDEKRRMEVDKKIKDIFDnfaniieggKEGNLVINDSKEMEDSAIKEVADSKnmqlEEADAFEKHKF 1854
|
250 260 270
....*....|....*....|....*....|....
gi 19112576 526 KDTNEKpAKDDNKEANEKAEKVDSKDVKEKIEEA 559
Cdd:PTZ00121 1855 NKNNEN-GEDGNKEADFNKEKDLKEDDEEEIEEA 1887
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
299-568 |
1.07e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 299 ALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETV--------SEEQMGSSNAKSKVLTSEPKD 370
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEArkaedarkAEEARKAEDAKRVEIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 371 STSVE-------AEKTETDEPAVG-KGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEE- 441
Cdd:PTZ00121 1163 ARKAEearkaedAKKAEAARKAEEvRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEa 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 442 -KDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDK--EEKTDSKETAD 518
Cdd:PTZ00121 1243 kKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKkaEEAKKADEAKK 1322
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 19112576 519 KVEQTDSKDTNEKPAKDDNKEANE--KAEKVDSKDVKEKIEEAADLQNSGKE 568
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEaaKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
301-569 |
1.37e-03 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 41.82 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 301 DDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTE 380
Cdd:NF033609 572 DSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDSDSDSDSDSD 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 381 TDEPAVGKGASDvSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDvKA 460
Cdd:NF033609 652 SDSDSDSDSDSD-SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD-SD 729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 461 KETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEA 540
Cdd:NF033609 730 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 809
|
250 260
....*....|....*....|....*....
gi 19112576 541 NEKAEKVDSKDVKEKIEEAADLQNSGKET 569
Cdd:NF033609 810 SDSDSDSDSDSDSDSDSDSDSDSDSDSDS 838
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
302-525 |
1.51e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.57 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 302 DSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLE---------TVSEEQMGSSNAKSKVLTSEPKDST 372
Cdd:PTZ00108 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKssadkskkaSVVGNSKRVDSDEKRKLDDKPDNKK 1217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 373 SVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITN--ED 450
Cdd:PTZ00108 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDgeSN 1297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 451 TGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADV----------------KAKETDSIEVDDKEEKTDSK 514
Cdd:PTZ00108 1298 GGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVkqasasqssrllrrprKKKSDSSSEDDDDSEVDDSE 1377
|
250
....*....|.
gi 19112576 515 ETADKVEQTDS 525
Cdd:PTZ00108 1378 DEDDEDDEDDD 1388
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
313-496 |
2.16e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 40.75 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 313 LEMKKDTSKPTASTKEVVVEKKPDESRKQ-AARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGAS 391
Cdd:PRK05901 24 AAKSKSKGFITKEEIKEALESKKKTPEQIdQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 392 DVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTK-------ITNEDTGKTETDVKAKETD 464
Cdd:PRK05901 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDeddddddVDDEDEEKKEAKELEKLSD 183
|
170 180 190
....*....|....*....|....*....|....
gi 19112576 465 SIEANDKDEKTDSKETEDKV-EETESkeAD-VKA 496
Cdd:PRK05901 184 DDDFVWDEDDSEALRQARKDaKLTAT--ADpVKA 215
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
327-559 |
2.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 327 KEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAK 406
Cdd:PTZ00121 1030 EELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETG 1109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 407 NADSEANLEEKSDVGEEKESKDENNKASLHKDVEE----KDTKITN-----EDTGKTETDVKAKETDSIEANDKDEKTDS 477
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEarkaEDAKRVEiarkaEDARKAEEARKAEDAKKAEAARKAEEVRK 1189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 478 KETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQtdskdtnekpAKDDNKEAnEKAEKVDSKDVKEKIE 557
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEE----------AKKDAEEA-KKAEEERNNEEIRKFE 1258
|
..
gi 19112576 558 EA 559
Cdd:PTZ00121 1259 EA 1260
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
395-563 |
4.49e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.60 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 395 DTAEISEK--TEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDKD 472
Cdd:pfam05262 173 DTDSISDKkvVEALREDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 473 EKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADKveqtdSKDTNEKPAKDDNKEANEKAEKVDSKDV 552
Cdd:pfam05262 253 KQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALK-----AKDHKAFDLKQESKASEKEAEDKELEAQ 327
|
170
....*....|.
gi 19112576 553 KEKIEEAADLQ 563
Cdd:pfam05262 328 KKREPVAEDLQ 338
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
312-558 |
7.14e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 39.23 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 312 ELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKTETDEPA--VGKG 389
Cdd:NF033838 189 ELELVKEEAKEPRDEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKrrAKRG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 390 ASDVSDTAEISEKtEAKNADSEanleeksdVGEEkeskdennkaSLHKDVEEKDTKITNEDTGKTETDVKAKETDsiean 469
Cdd:NF033838 269 VLGEPATPDKKEN-DAKSSDSS--------VGEE----------TLPSPSLKPEKKVAEAEKKVEEAKKKAKDQK----- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 470 DKDEKTDSKETEDKVEeTESKEADVKAKETDSIEVddKEEKTDS------KETADKVEQTDSKDTNEKPAKDDNKEANEK 543
Cdd:NF033838 325 EEDRRNYPTNTYKTLE-LEIAESDVKVKEAELELV--KEEAKEPrneekiKQAKAKVESKKAEATRLEKIKTDRKKAEEE 401
|
250
....*....|....*..
gi 19112576 544 AEK--VDSKDVKEKIEE 558
Cdd:NF033838 402 AKRkaAEEDKVKEKPAE 418
|
|
| CUE_VPS9_like |
cd14369 |
CUE domain found in vacuolar protein sorting-associated protein 9 (VPS9) and similar proteins; ... |
24-58 |
7.82e-03 |
|
CUE domain found in vacuolar protein sorting-associated protein 9 (VPS9) and similar proteins; VPS9, also called vacuolar protein-targeting protein 9, is a cytosolic yeast protein required for localization of vacuolar proteins, such as the soluble vacuolar hydrolases CPY and PrA. It may bind and act as an effector of a rab GTPase and plays a role in vacuolar protein sorting (VPS) pathway. VPS9 contains a region called GBH domain that is related to mammalian Ras-binding proteins, Rin1 and JC265, and may negatively regulate Ras-mediated signaling in yeast Saccharomyces cerevisiae. This model corresponds to the N-terminal CUE domain that interacts specifically with monoubiquitin and regulates intramolecular monoubiquitylation.
Pssm-ID: 270552 Cd Length: 42 Bit Score: 34.51 E-value: 7.82e-03
10 20 30
....*....|....*....|....*....|....*
gi 19112576 24 TLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGL 58
Cdd:cd14369 8 TLQEMFPDLDKEIIKDVVIAKKGRIGECVDACLQL 42
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
340-555 |
8.80e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 39.00 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 340 KQAARTLETVSEEQMGSSNAKSKVLTSEPKDSTSVEAEKtetDEPAVGKGASDVSDTAEISEKTEAKNADSEANLeekSD 419
Cdd:PTZ00341 320 KAAEAEMKKRAEKPKKKKSKRRGWLCCGGGDIETVEPQQ---EEPVQDVGEHQINEYGDILPSLKASINNSAINY---YD 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19112576 420 VGEEKESKDENNKASLHKDVE-----EKDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADV 494
Cdd:PTZ00341 394 AVKDGKYLDDDSSDALYTDEDllfdlEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDD 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19112576 495 KAKETDSI----EVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNKEANEKAEKVDSKDVKEK 555
Cdd:PTZ00341 474 ESGEHQSVneivEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEE 538
|
|
| |
