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Conserved domains on  [gi|19113376|ref|NP_596584|]
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mitochondrial 54S ribosomal protein bL34m [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
66-107 2.41e-15

Ribosomal protein L34;


:

Pssm-ID: 425699  Cd Length: 42  Bit Score: 63.95  E-value: 2.41e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 19113376    66 GNEYQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:pfam00468   1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
66-107 2.41e-15

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 63.95  E-value: 2.41e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 19113376    66 GNEYQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:pfam00468   1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 69-107 1.54e-12

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 57.03  E-value: 1.54e-12
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 19113376  69 YQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:COG0230   5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 69-107 3.25e-08

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 45.97  E-value: 3.25e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 19113376    69 YQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:TIGR01030   5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Name Accession Description Interval E-value
Ribosomal_L34 pfam00468
Ribosomal protein L34;
66-107 2.41e-15

Ribosomal protein L34;


Pssm-ID: 425699  Cd Length: 42  Bit Score: 63.95  E-value: 2.41e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 19113376    66 GNEYQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:pfam00468   1 KRTYQPSNRKRKRKHGFRARMRTKNGRKVLKRRRAKGRKRLT 42
RpmH COG0230
Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 ...
 69-107 1.54e-12

Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L34 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440000  Cd Length: 44  Bit Score: 57.03  E-value: 1.54e-12
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 19113376  69 YQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:COG0230   5 YQPSKRKRKRTHGFRARMSTKNGRKVLKRRRAKGRKRLT 43
rpmH_bact TIGR01030
ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its ...
 69-107 3.25e-08

ribosomal protein L34, bacterial type; This model describes the bacterial protein L34 and its equivalents in organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130102  Cd Length: 44  Bit Score: 45.97  E-value: 3.25e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 19113376    69 YQPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGRMYLS 107
Cdd:TIGR01030   5 YQPSNLKRKRTHGFRARMATKNGRKVLRRRRAKGRHKLT 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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