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Conserved domains on  [gi|429241150|ref|NP_596611|]
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mitochondrial 37S ribosomal protein uS10m [Schizosaccharomyces pombe]

Protein Classification

uS10 family ribosomal protein( domain architecture ID 1081)

uS10 family ribosomal protein such as eukaryotic 40S ribosomal protein S20, bacterial 30S ribosomal protein S10, and mitochondrial 28S ribosomal protein S10

Gene Ontology:  GO:0003723|GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpsJ super family cl00314
30S ribosomal protein S10; Reviewed
 71-166 4.07e-39

30S ribosomal protein S10; Reviewed


The actual alignment was detected with superfamily member TIGR01049:

Pssm-ID: 469716  Cd Length: 99  Bit Score: 130.45  E-value: 4.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429241150   71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETf 150
Cdd:TIGR01049   5 IKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTIDA- 83

                          90
                  ....*....|....*....
gi 429241150  151 fsyLRKCNM---WDLKLQA 166
Cdd:TIGR01049  84 ---LMKLDLpagVDIEIKL 99
 
Name Accession Description Interval E-value
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 71-166 4.07e-39

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 130.45  E-value: 4.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429241150   71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETf 150
Cdd:TIGR01049   5 IKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTIDA- 83

                          90
                  ....*....|....*....
gi 429241150  151 fsyLRKCNM---WDLKLQA 166
Cdd:TIGR01049  84 ---LMKLDLpagVDIEIKL 99
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 71-156 9.68e-34

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 116.82  E-value: 9.68e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429241150   71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETF 150
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81


                  ....*.
gi 429241150  151 FSYLRK 156
Cdd:pfam00338  82 LRYLQL 87
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 71-148 3.31e-17

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 74.05  E-value: 3.31e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429241150  71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 148
Cdd:PRK00596   8 IRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKTVD 85
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 71-148 3.73e-15

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 68.62  E-value: 3.73e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429241150  71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 148
Cdd:COG0051    8 IRLKSYDHRLLDQSVKKIVETAKRTGAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKTIR 85
 
Name Accession Description Interval E-value
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 71-166 4.07e-39

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 130.45  E-value: 4.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429241150   71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETf 150
Cdd:TIGR01049   5 IKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNPKTIDA- 83

                          90
                  ....*....|....*....
gi 429241150  151 fsyLRKCNM---WDLKLQA 166
Cdd:TIGR01049  84 ---LMKLDLpagVDIEIKL 99
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 71-156 9.68e-34

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 116.82  E-value: 9.68e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429241150   71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETF 150
Cdd:pfam00338   2 IKLKSYDHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIKDATPETVDAL 81


                  ....*.
gi 429241150  151 FSYLRK 156
Cdd:pfam00338  82 LRYLQL 87
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 71-148 3.31e-17

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 74.05  E-value: 3.31e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429241150  71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 148
Cdd:PRK00596   8 IRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKTVD 85
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 71-148 3.73e-15

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 68.62  E-value: 3.73e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429241150  71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 148
Cdd:COG0051    8 IRLKSYDHRLLDQSVKKIVETAKRTGAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIHDPTDKTIR 85
rps10 CHL00135
ribosomal protein S10; Validated
 71-151 3.37e-10

ribosomal protein S10; Validated


Pssm-ID: 177057  Cd Length: 101  Bit Score: 55.38  E-value: 3.37e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429241150  71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETF 150
Cdd:CHL00135  11 IKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVDKDSREHFEIRTHKRIIDIYYPSSETIDSL 90


                 .
gi 429241150 151 F 151
Cdd:CHL00135  91 M 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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