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Conserved domains on  [gi|19113424|ref|NP_596632|]
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importin alpha family nuclear import signal receptor adaptor Imp1 [Schizosaccharomyces pombe]

Protein Classification

importin subunit alpha( domain architecture ID 11473712)

importin subunit alpha functions in nuclear protein import as an adapter protein for importin beta nuclear receptors

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
1-531 0e+00

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


:

Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 958.19  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   1 MESRYLSD-RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLnavlqndIDVEEEADQSQVQMEQQMKDEF 79
Cdd:COG5064   1 STSRFVPEaRRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-------ADVSEEAESSFIPMEQQFYSEL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424  80 PKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFL-ESEHHLLQFEAAWALTNIASGTTDQTRIV 158
Cdd:COG5064  74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMdEIQRDMLQFEAAWALTNIASGTTQQTKVV 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 159 VDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKN 238
Cdd:COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 239 PPPNWSTISVAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIV 318
Cdd:COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 319 TGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAI 398
Cdd:COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 399 SNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAVYVEEAGGMDMIH 478
Cdd:COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIH 473

                       490       500       510       520       530
                ....*....|....*....|....*....|....*....|....*....|...
gi 19113424 479 DLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGNGPQAQGEFK 531
Cdd:COG5064 474 GLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVNQQGNFN 526
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
1-531 0e+00

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 958.19  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   1 MESRYLSD-RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLnavlqndIDVEEEADQSQVQMEQQMKDEF 79
Cdd:COG5064   1 STSRFVPEaRRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-------ADVSEEAESSFIPMEQQFYSEL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424  80 PKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFL-ESEHHLLQFEAAWALTNIASGTTDQTRIV 158
Cdd:COG5064  74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMdEIQRDMLQFEAAWALTNIASGTTQQTKVV 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 159 VDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKN 238
Cdd:COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 239 PPPNWSTISVAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIV 318
Cdd:COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 319 TGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAI 398
Cdd:COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 399 SNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAVYVEEAGGMDMIH 478
Cdd:COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIH 473

                       490       500       510       520       530
                ....*....|....*....|....*....|....*....|....*....|...
gi 19113424 479 DLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGNGPQAQGEFK 531
Cdd:COG5064 474 GLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVNQQGNFN 526
IBB pfam01749
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 9-99 1.46e-29

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 111.09  E-value: 1.46e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424     9 RRSRFKSKGVfKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDveeeadqsqvqMEQQMKDEFPKLTADVMS 88
Cdd:pfam01749   1 RRKSFKNKGK-DADELRRRREEVQVELRKQKREEQLLKRRNVGAPSSSSSS-----------AESQLLESLPEMVQGVNS 68

                          90
                  ....*....|.
gi 19113424    89 DDIELQLGAVT 99
Cdd:pfam01749  69 DDPELQLEATQ 79
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 363-403 1.06e-08

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 50.89  E-value: 1.06e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 19113424    363 NTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATS 403
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 129-461 5.44e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 43.17  E-value: 5.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   129 LESEHHllQfEAAWALTNIASGTTDQTR-IVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQ 207
Cdd:PLN03200  457 LSSEQQ--Q-EYAVALLAILTDEVDESKwAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   208 PLLnilqssasdvsmlrnatWTLsnlcrgKNPPPNWSTISVAVpiLAKLLYSEDVEII--VDACwaisYLSDGPNEKIGA 285
Cdd:PLN03200  534 ALL-----------------WLL------KNGGPKGQEIAAKT--LTKLVRTADAATIsqLTAL----LLGDLPESKVHV 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   286 ILDVGCaprlveLLSSPSVNiqtpalrsvgNIVTGTDAQTQiiidcgALNAFPSLLSHQKENIRKEACWTISNITAGNTQ 365
Cdd:PLN03200  585 LDVLGH------VLSVASLE----------DLVREGSAAND------ALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   366 QIQAIIESNLIPPLVHLLSYADYKTKKEACWAISnATSGGLGQPDQIRYlVSQGVIKPLCDMLNGSDNKIIQVALDAIEN 445
Cdd:PLN03200  643 LCESLATDEIINPCIKLLTNNTEAVATQSARALA-ALSRSIKENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720

                         330
                  ....*....|....*.
gi 19113424   446 ILKVGEMDRTMDLENI 461
Cdd:PLN03200  721 LLSDPEVAAEALAEDI 736
Syo1_like cd13394
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 144-440 1.36e-03

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


Pssm-ID: 240521 [Multi-domain]  Cd Length: 597  Bit Score: 41.52  E-value: 1.36e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 144 LTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKD-VREQVVWALGN----IAGDSSACRDYVLGN-GVLQPLLNILQSSA 217
Cdd:cd13394 167 LWNLAEGSDEILSAVNKEDLLLFLLAILINFLTSkLPTSLFNAALQclytLSEDNPEFIDKLSSDpEILGNLLDIVSSDP 246

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 218 SDVSML-RNATW-TLSNLCRGKNPPPNWSTISVA--VPILAKLLYSEDVEIIVDAC---------WAISYLSDGPNEKIG 284
Cdd:cd13394 247 SSSNILlKVLVCgILLNILEVLSWLAGKDAAADAilLPILSAILSILALEILANICkeldkkddeAMEDEQSDEDEEEDE 326

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 285 AILDVGCA--------------PRLVELLSSPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLlshqkenirk 350
Cdd:cd13394 327 DDEASETLvpelspleisldllTALLELIAPTPESVEPILPSSTIEELPPPLSKLLLSLHSRALECLNNL---------- 396

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 351 eaCWTISNITAGNT--QQIQA-------IIESNLIPPLVHLLsyadyKTKKEACWAISNATSGGLGQPDqirylVSQGVI 421
Cdd:cd13394 397 --LWLFLSLELGGDwnNSLQQlwdllaqLIFKDVISADLELL-----EAATSVLWALLKSLGGEILLQQ-----NTHDFI 464

                       330
                ....*....|....*....
gi 19113424 422 KPLCDMLNGSDNKIIQVAL 440
Cdd:cd13394 465 QSLIEASKTDADLELRVRC 483
 
Name Accession Description Interval E-value
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
1-531 0e+00

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 958.19  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   1 MESRYLSD-RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLnavlqndIDVEEEADQSQVQMEQQMKDEF 79
Cdd:COG5064   1 STSRFVPEaRRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNL-------ADVSEEAESSFIPMEQQFYSEL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424  80 PKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFL-ESEHHLLQFEAAWALTNIASGTTDQTRIV 158
Cdd:COG5064  74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMdEIQRDMLQFEAAWALTNIASGTTQQTKVV 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 159 VDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKN 238
Cdd:COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 239 PPPNWSTISVAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIV 318
Cdd:COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 319 TGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAI 398
Cdd:COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 399 SNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENILKVGEMDRTMDLENINQYAVYVEEAGGMDMIH 478
Cdd:COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIH 473

                       490       500       510       520       530
                ....*....|....*....|....*....|....*....|....*....|...
gi 19113424 479 DLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAFTFGNGPQAQGEFK 531
Cdd:COG5064 474 GLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVNQQGNFN 526
IBB pfam01749
Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), ...
 9-99 1.46e-29

Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain.


Pssm-ID: 460311 [Multi-domain]  Cd Length: 79  Bit Score: 111.09  E-value: 1.46e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424     9 RRSRFKSKGVfKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDveeeadqsqvqMEQQMKDEFPKLTADVMS 88
Cdd:pfam01749   1 RRKSFKNKGK-DADELRRRREEVQVELRKQKREEQLLKRRNVGAPSSSSSS-----------AESQLLESLPEMVQGVNS 68

                          90
                  ....*....|.
gi 19113424    89 DDIELQLGAVT 99
Cdd:pfam01749  69 DDPELQLEATQ 79
Arm_3 pfam16186
Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic ...
 466-514 1.64e-16

Atypical Arm repeat; This atypical Arm repeat appears at the very C-terminus of eukaryotic proteins such as importin subunit alpha-2, as the last of the repeating units.


Pssm-ID: 465050 [Multi-domain]  Cd Length: 49  Bit Score: 73.39  E-value: 1.64e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 19113424   466 VYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETE 514
Cdd:pfam16186   1 LLIEEAGGLDKIEALQNHENEEIYKKAYKIIEKYFSDEEEEDDENLAPE 49
HEAT COG1413
HEAT repeat [General function prediction only];
140-317 3.28e-12

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 63.88  E-value: 3.28e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 140 AAWALTNIAsgttdqtrivvDSGAVPRFIQLLSSPEKDVREQVVWALGNIaGDSSAcrdyvlgngvLQPLLNILQSSASD 219
Cdd:COG1413   5 AARALGRLG-----------DPAAVPALIAALADEDPDVRAAAARALGRL-GDPRA----------VPALLEALKDPDPE 62

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 220 VsmLRNATWTLSNLcrgKNPPpnwstisvAVPILAKLLYSEDVEIIVDACWAisylsdgpnekIGAILDVGCAPRLVELL 299
Cdd:COG1413  63 V--RAAAAEALGRI---GDPE--------AVPALIAALKDEDPEVRRAAAEA-----------LGRLGDPAAVPALLEAL 118

                       170
                ....*....|....*...
gi 19113424 300 SSPSVNIQTPALRSVGNI 317
Cdd:COG1413 119 KDPDWEVRRAAARALGRL 136
HEAT COG1413
HEAT repeat [General function prediction only];
121-272 1.39e-11

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 61.95  E-value: 1.39e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 121 VVDRFVQFLESEHHLLQFEAAWALTNIAsgttdqtrivvDSGAVPRFIQLLSSPEKDVREQVVWALGNIaGDSSAcrdyv 200
Cdd:COG1413  17 AVPALIAALADEDPDVRAAAARALGRLG-----------DPRAVPALLEALKDPDPEVRAAAAEALGRI-GDPEA----- 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19113424 201 lgngvLQPLLNILQSSASDVsmLRNATWTLSNLcrgKNPPpnwstisvAVPILAKLLYSEDVEIIVDACWAI 272
Cdd:COG1413  80 -----VPALIAALKDEDPEV--RRAAAEALGRL---GDPA--------AVPALLEALKDPDWEVRRAAARAL 133
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 363-403 1.12e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 56.69  E-value: 1.12e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19113424   363 NTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATS 403
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 321-361 2.45e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 55.54  E-value: 2.45e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19113424   321 TDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITA 361
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 151-190 2.70e-10

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 55.54  E-value: 2.70e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 19113424   151 TTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIA 190
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 136-189 1.26e-09

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 53.91  E-value: 1.26e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 19113424   136 LQFEAAWALTNIASGTTDQTRIVVDSgAVPRFIQLLSSPEKDVREQVVWALGNI 189
Cdd:pfam13513   3 VREAAALALGSLAEGGPDLLAPAVPE-LLPALLPLLNDDSDLVREAAAWALGRL 55
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 363-403 1.06e-08

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 50.89  E-value: 1.06e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 19113424    363 NTQQIQAIIESNLIPPLVHLLSYADYKTKKEACWAISNATS 403
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 109-149 1.35e-08

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 50.53  E-value: 1.35e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19113424   109 THPPIDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNIAS 149
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 151-190 1.71e-08

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 50.51  E-value: 1.71e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 19113424    151 TTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIA 190
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 321-361 9.86e-08

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 48.19  E-value: 9.86e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 19113424    321 TDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITA 361
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
HEAT COG1413
HEAT repeat [General function prediction only];
178-359 9.96e-08

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 51.17  E-value: 9.96e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 178 VREQVVWALGNIaGDSSAcrdyvlgngvLQPLLNILQSSASDVsmLRNATWTLSNLcrgKNPPpnwstisvAVPILAKLL 257
Cdd:COG1413   1 VRRAAARALGRL-GDPAA----------VPALIAALADEDPDV--RAAAARALGRL---GDPR--------AVPALLEAL 56

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 258 YSEDVEIIVDACWAISYLSDGPnekigAIldvgcaPRLVELLSSPSVNIQTPALRSVGNIvtGTDAqtqiiidcgALNAF 337
Cdd:COG1413  57 KDPDPEVRAAAAEALGRIGDPE-----AV------PALIAALKDEDPEVRRAAAEALGRL--GDPA---------AVPAL 114

                       170       180
                ....*....|....*....|..
gi 19113424 338 PSLLSHQKENIRKEACWTISNI 359
Cdd:COG1413 115 LEALKDPDWEVRRAAARALGRL 136
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 193-235 1.39e-07

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 47.83  E-value: 1.39e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 19113424   193 SSACRDYVLGNGVLQPLLNILQSSasDVSMLRNATWTLSNLCR 235
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSP--DEEVQEEAAWALSNLAA 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 409-446 4.66e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 43.60  E-value: 4.66e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 19113424   409 PDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAIENI 446
Cdd:pfam00514   2 PENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNL 39
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 109-149 6.24e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 43.19  E-value: 6.24e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 19113424    109 THPPIDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNIAS 149
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 249-277 8.24e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.83  E-value: 8.24e-06
                          10        20
                  ....*....|....*....|....*....
gi 19113424   249 AVPILAKLLYSEDVEIIVDACWAISYLSD 277
Cdd:pfam00514  13 AVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
HEAT COG1413
HEAT repeat [General function prediction only];
121-190 9.82e-06

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 45.39  E-value: 9.82e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 121 VVDRFVQFLESEHHLLQFEAAWALTNIAsgttdqtrivvDSGAVPRFIQLLSSPEKDVREQVVWALGNIA 190
Cdd:COG1413  79 AVPALIAALKDEDPEVRRAAAEALGRLG-----------DPAAVPALLEALKDPDWEVRRAAARALGRLG 137
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 279-319 1.54e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.06  E-value: 1.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19113424   279 PNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIVT 319
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 122-220 9.72e-05

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 41.17  E-value: 9.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   122 VDRFVQFL-ESEHHLLQFEAAWALTNIAsgttdqtrivvDSGAVPRFIQLLSSPEKDVREQVVWALGNIaGDSSAcrdyv 200
Cdd:pfam13646   1 LPALLQALlRDPDPEVRAAAIRALGRIG-----------DPEAVPALLELLKDEDPAVRRAAAEALGKI-GDPEA----- 63

                          90       100
                  ....*....|....*....|
gi 19113424   201 lgngvLQPLLNILQSSASDV 220
Cdd:pfam13646  64 -----LPALLELLRDDDDDV 78
HEAT COG1413
HEAT repeat [General function prediction only];
283-446 1.29e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 41.92  E-value: 1.29e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 283 IGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIvtGTDAqtqiiidcgALNAFPSLLSHQKENIRKEACWTISNItaG 362
Cdd:COG1413   9 LGRLGDPAAVPALIAALADEDPDVRAAAARALGRL--GDPR---------AVPALLEALKDPDPEVRAAAAEALGRI--G 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 363 NTQqiqaiiesnLIPPLVHLLSYADYKTKKEACWAIsnatsGGLGQPDqirylvsqgVIKPLCDMLNGSDNKIIQVALDA 442
Cdd:COG1413  76 DPE---------AVPALIAALKDEDPEVRRAAAEAL-----GRLGDPA---------AVPALLEALKDPDWEVRRAAARA 132


                ....
gi 19113424 443 IENI 446
Cdd:COG1413 133 LGRL 136
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 279-318 4.15e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.79  E-value: 4.15e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 19113424    279 PNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIV 318
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 129-461 5.44e-04

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 43.17  E-value: 5.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   129 LESEHHllQfEAAWALTNIASGTTDQTR-IVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQ 207
Cdd:PLN03200  457 LSSEQQ--Q-EYAVALLAILTDEVDESKwAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   208 PLLnilqssasdvsmlrnatWTLsnlcrgKNPPPNWSTISVAVpiLAKLLYSEDVEII--VDACwaisYLSDGPNEKIGA 285
Cdd:PLN03200  534 ALL-----------------WLL------KNGGPKGQEIAAKT--LTKLVRTADAATIsqLTAL----LLGDLPESKVHV 584

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   286 ILDVGCaprlveLLSSPSVNiqtpalrsvgNIVTGTDAQTQiiidcgALNAFPSLLSHQKENIRKEACWTISNITAGNTQ 365
Cdd:PLN03200  585 LDVLGH------VLSVASLE----------DLVREGSAAND------ALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   366 QIQAIIESNLIPPLVHLLSYADYKTKKEACWAISnATSGGLGQPDQIRYlVSQGVIKPLCDMLNGSDNKIIQVALDAIEN 445
Cdd:PLN03200  643 LCESLATDEIINPCIKLLTNNTEAVATQSARALA-ALSRSIKENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720

                         330
                  ....*....|....*.
gi 19113424   446 ILKVGEMDRTMDLENI 461
Cdd:PLN03200  721 LLSDPEVAAEALAEDI 736
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 249-277 7.78e-04

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 37.02  E-value: 7.78e-04
                           10        20
                   ....*....|....*....|....*....
gi 19113424    249 AVPILAKLLYSEDVEIIVDACWAISYLSD 277
Cdd:smart00185  13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 347-400 8.10e-04

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 37.73  E-value: 8.10e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 19113424   347 NIRKEACWTISNITAGNTQQIQAIIEsNLIPPLVHLLSYADYKTKKEACWAISN 400
Cdd:pfam13513   2 RVREAAALALGSLAEGGPDLLAPAVP-ELLPALLPLLNDDSDLVREAAAWALGR 54
Syo1_like cd13394
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 144-440 1.36e-03

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


Pssm-ID: 240521 [Multi-domain]  Cd Length: 597  Bit Score: 41.52  E-value: 1.36e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 144 LTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKD-VREQVVWALGN----IAGDSSACRDYVLGN-GVLQPLLNILQSSA 217
Cdd:cd13394 167 LWNLAEGSDEILSAVNKEDLLLFLLAILINFLTSkLPTSLFNAALQclytLSEDNPEFIDKLSSDpEILGNLLDIVSSDP 246

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 218 SDVSML-RNATW-TLSNLCRGKNPPPNWSTISVA--VPILAKLLYSEDVEIIVDAC---------WAISYLSDGPNEKIG 284
Cdd:cd13394 247 SSSNILlKVLVCgILLNILEVLSWLAGKDAAADAilLPILSAILSILALEILANICkeldkkddeAMEDEQSDEDEEEDE 326

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 285 AILDVGCA--------------PRLVELLSSPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLlshqkenirk 350
Cdd:cd13394 327 DDEASETLvpelspleisldllTALLELIAPTPESVEPILPSSTIEELPPPLSKLLLSLHSRALECLNNL---------- 396

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424 351 eaCWTISNITAGNT--QQIQA-------IIESNLIPPLVHLLsyadyKTKKEACWAISNATSGGLGQPDqirylVSQGVI 421
Cdd:cd13394 397 --LWLFLSLELGGDwnNSLQQlwdllaqLIFKDVISADLELL-----EAATSVLWALLKSLGGEILLQQ-----NTHDFI 464

                       330
                ....*....|....*....
gi 19113424 422 KPLCDMLNGSDNKIIQVAL 440
Cdd:cd13394 465 QSLIEASKTDADLELRVRC 483
HEAT_EZ pfam13513
HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats ...
 178-233 1.93e-03

HEAT-like repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role.


Pssm-ID: 463906 [Multi-domain]  Cd Length: 55  Bit Score: 36.58  E-value: 1.93e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 19113424   178 VREQVVWALGNIA-GDSSACRDYVlgNGVLQPLLNILQSSASDVsmLRNATWTLSNL 233
Cdd:pfam13513   3 VREAAALALGSLAeGGPDLLAPAV--PELLPALLPLLNDDSDLV--REAAAWALGRL 55
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 113-208 2.26e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 40.86  E-value: 2.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   113 IDQVIACGVVDRFVQFLESEHHL-LQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDV---------REQV 182
Cdd:PLN03200  224 ISKVLDAGAVKQLLKLLGQGNEVsVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFmqgefaqalQENA 303

                          90       100
                  ....*....|....*....|....*.
gi 19113424   183 VWALGNIAGDSSACRDYvLGNGVLQP 208
Cdd:PLN03200  304 MGALANICGGMSALILY-LGELSESP 328
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 193-235 2.49e-03

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 35.87  E-value: 2.49e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 19113424    193 SSACRDYVLGNGVLQPLLNILQSSasDVSMLRNATWTLSNLCR 235
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSE--DEEVVKEAAWALSNLSS 41
HEAT pfam02985
HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see ...
 164-190 5.82e-03

HEAT repeat; The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514).


Pssm-ID: 460773  Cd Length: 31  Bit Score: 34.43  E-value: 5.82e-03
                          10        20
                  ....*....|....*....|....*..
gi 19113424   164 VPRFIQLLSSPEKDVREQVVWALGNIA 190
Cdd:pfam02985   2 LPLLLKLLNDPSPEVREAAAEALGELA 28
ARGLU pfam15346
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ...
 21-78 6.90e-03

Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.


Pssm-ID: 405931 [Multi-domain]  Cd Length: 151  Bit Score: 37.34  E-value: 6.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19113424    21 ADELRRQREEQQIEiRKQKREESLNKRRNLNAVL-QNDIDVEE------EADQSQVQMEQQMKDE 78
Cdd:pfam15346  55 LEELEREREAELEE-ERRKEEEERKKREELERILeENNRKIEEaqrkeaEERLAMLEEQRRMKEE 118
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 120-236 6.96e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 39.32  E-value: 6.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19113424   120 GVVDRFVQFLESEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSP-EKDVREQVVWALGNIAGDSSACRD 198
Cdd:PLN03200  189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGnEVSVRAEAAGALEALSSQSKEAKQ 268

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 19113424   199 YVLGNGVLQPLLNILQSSASDV-------SMLRNATWTLSNLCRG 236
Cdd:PLN03200  269 AIADAGGIPALINATVAPSKEFmqgefaqALQENAMGALANICGG 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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