NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|50355939|ref|NP_598499|]
View 

anthrax toxin receptor 2 precursor [Mus musculus]

Protein Classification

anthrax toxin receptor( domain architecture ID 10107125)

anthrax toxin receptor is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells

CATH:  3.40.50.410
Gene Ontology:  GO:0004888|GO:0046872
SCOP:  3000832

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
39-221 3.82e-104

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


:

Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 308.67  E-value: 3.82e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  39 CKKAFDLYFVLDKSGSVANNWIEIYNFVHQLTERFVSPEMRLSFIVFSSQATIILPLTGDRYKIGKGLEDLKAVKPVGET 118
Cdd:cd01474   1 CAGHFDLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQT 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 119 YIHEGLKLANEQI--QNAGGLKASSIIIALTDGKLDGLVPSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIADSKDQV 196
Cdd:cd01474  81 YIHEGLENANEQIfnRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTDFLKSQLINIADSKEYV 160
                       170       180
                ....*....|....*....|....*
gi 50355939 197 FPVKGGFQALKGIINSILAQSCTEI 221
Cdd:cd01474 161 FPVTSGFQALSGIIESVVKKACIEI 185
Ant_C pfam05586
Anthrax receptor C-terminus region; This region is found in the putatively cytoplasmic ...
394-485 3.67e-52

Anthrax receptor C-terminus region; This region is found in the putatively cytoplasmic C-terminus of the anthrax receptor.


:

Pssm-ID: 461683  Cd Length: 93  Bit Score: 171.33  E-value: 3.67e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   394 VRWGDKGSTEEGARLEKAKNAVVMVPEEEIPIPSRPPRPRPTHQAP-QTKWYTPIKGRLDALWALIMKQYDRVSLMRPQE 472
Cdd:pfam05586   1 VRWGEKGSTEEGAKLEKAKNAVVKMPEEEEEPPEPRPRKPPARKPPpQRKWYTPIKGKLDALWALLRRGYDRVSLMRPTP 80
                          90
                  ....*....|...
gi 50355939   473 GDEGRCINFSRVP 485
Cdd:pfam05586  81 GDKGRCINFTRVK 93
Anth_Ig pfam05587
Anthrax receptor extracellular domain; This region is found in the putatively extracellular ...
216-317 2.69e-50

Anthrax receptor extracellular domain; This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to pfam01833 (personal obs: C Yeats).


:

Pssm-ID: 461684  Cd Length: 102  Bit Score: 166.66  E-value: 2.69e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   216 QSCTEILELSPSSVCVGEKFQVVLTGRAVTSISHDGSVLCTFTANSTYTKSEKPVSIQPSSILCPAPVLNKDGETLEVSI 295
Cdd:pfam05587   1 KSCIEILSVEPSSVCVGESFQVVLRGRGFNNAKNIDEVLCRFTINETTVYNEKPSSVQDNSILCPAPVLNEAGQTLDVLV 80
                          90       100
                  ....*....|....*....|..
gi 50355939   296 SYNDGKSAVSRSLTITATECTN 317
Cdd:pfam05587  81 SLNNGKSFISSSLTITATTCSD 102
 
Name Accession Description Interval E-value
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
39-221 3.82e-104

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 308.67  E-value: 3.82e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  39 CKKAFDLYFVLDKSGSVANNWIEIYNFVHQLTERFVSPEMRLSFIVFSSQATIILPLTGDRYKIGKGLEDLKAVKPVGET 118
Cdd:cd01474   1 CAGHFDLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQT 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 119 YIHEGLKLANEQI--QNAGGLKASSIIIALTDGKLDGLVPSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIADSKDQV 196
Cdd:cd01474  81 YIHEGLENANEQIfnRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTDFLKSQLINIADSKEYV 160
                       170       180
                ....*....|....*....|....*
gi 50355939 197 FPVKGGFQALKGIINSILAQSCTEI 221
Cdd:cd01474 161 FPVTSGFQALSGIIESVVKKACIEI 185
Ant_C pfam05586
Anthrax receptor C-terminus region; This region is found in the putatively cytoplasmic ...
394-485 3.67e-52

Anthrax receptor C-terminus region; This region is found in the putatively cytoplasmic C-terminus of the anthrax receptor.


Pssm-ID: 461683  Cd Length: 93  Bit Score: 171.33  E-value: 3.67e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   394 VRWGDKGSTEEGARLEKAKNAVVMVPEEEIPIPSRPPRPRPTHQAP-QTKWYTPIKGRLDALWALIMKQYDRVSLMRPQE 472
Cdd:pfam05586   1 VRWGEKGSTEEGAKLEKAKNAVVKMPEEEEEPPEPRPRKPPARKPPpQRKWYTPIKGKLDALWALLRRGYDRVSLMRPTP 80
                          90
                  ....*....|...
gi 50355939   473 GDEGRCINFSRVP 485
Cdd:pfam05586  81 GDKGRCINFTRVK 93
Anth_Ig pfam05587
Anthrax receptor extracellular domain; This region is found in the putatively extracellular ...
216-317 2.69e-50

Anthrax receptor extracellular domain; This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to pfam01833 (personal obs: C Yeats).


Pssm-ID: 461684  Cd Length: 102  Bit Score: 166.66  E-value: 2.69e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   216 QSCTEILELSPSSVCVGEKFQVVLTGRAVTSISHDGSVLCTFTANSTYTKSEKPVSIQPSSILCPAPVLNKDGETLEVSI 295
Cdd:pfam05587   1 KSCIEILSVEPSSVCVGESFQVVLRGRGFNNAKNIDEVLCRFTINETTVYNEKPSSVQDNSILCPAPVLNEAGQTLDVLV 80
                          90       100
                  ....*....|....*....|..
gi 50355939   296 SYNDGKSAVSRSLTITATECTN 317
Cdd:pfam05587  81 SLNNGKSFISSSLTITATTCSD 102
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
44-197 1.89e-19

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 85.58  E-value: 1.89e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939     44 DLYFVLDKSGSVANNWIEIY-NFVHQLTERF--VSPEMRLSFIVFSSQATIILPL--TGDRYKIGKGLEDLKaVKPVGET 118
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAkEFVLKLVEQLdiGPDGDRVGLVTFSDDARVLFPLndSRSKDALLEALASLS-YKLGGGT 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939    119 YIHEGLKLANEQI---QNAGGLKASSIIIALTDGKLDGLVPSYAENeAKKSRSLGASVYCVGV-LDFEQAQLERIADSKD 194
Cdd:smart00327  80 NLGAALQYALENLfskSAGSRRGAPKVVILITDGESNDGPKDLLKA-AKELKRSGVKVFVVGVgNDVDEEELKKLASAPG 158

                   ...
gi 50355939    195 QVF 197
Cdd:smart00327 159 GVY 161
VWA pfam00092
von Willebrand factor type A domain;
44-197 1.36e-17

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 80.40  E-value: 1.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939    44 DLYFVLDKSGSV-ANNWIEIYNFVHQLTERF-VSPE-MRLSFIVFSSQATIILPLTGDRYKigkglED-LKAVKPV---- 115
Cdd:pfam00092   1 DIVFLLDGSGSIgGDNFEKVKEFLKKLVESLdIGPDgTRVGLVQYSSDVRTEFPLNDYSSK-----EElLSAVDNLrylg 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   116 -GETYIHEGLKLANEQI---QNAGGLKASSIIIALTDGKLDGlvpSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIAD 191
Cdd:pfam00092  76 gGTTNTGKALKYALENLfssAAGARPGAPKVVVLLTDGRSQD---GDPEEVARELKSAGVTVFAVGVGNADDEELRKIAS 152

                  ....*.
gi 50355939   192 SKDQVF 197
Cdd:pfam00092 153 EPGEGH 158
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
5-213 3.89e-17

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 81.14  E-value: 3.89e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   5 RSRARSPGSWLFPGLWLLAVGGPGSLLQAQEQPSCKKAFDLYFVLDKSGS-VANNWIE-----IYNFVHQLTERfvspeM 78
Cdd:COG1240  55 GLGLLALLLAALLLLLAVLLLLLALALAPLALARPQRGRDVVLVVDASGSmAAENRLEaakgaLLDFLDDYRPR-----D 129
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  79 RLSFIVFSSQATIILPLTGDRYKIGKGLEDLkavKPVGETYIHEGLKLANEQIQNAGGlKASSIIIALTDGKLDGLVPSY 158
Cdd:COG1240 130 RVGLVAFGGEAEVLLPLTRDREALKRALDEL---PPGGGTPLGDALALALELLKRADP-ARRKVIVLLTDGRDNAGRIDP 205
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 50355939 159 AEnEAKKSRSLGASVYCVGVLD--FEQAQLERIADSKD-QVFPVkGGFQALKGIINSI 213
Cdd:COG1240 206 LE-AAELAAAAGIRIYTIGVGTeaVDEGLLREIAEATGgRYFRA-DDLSELAAIYREI 261
 
Name Accession Description Interval E-value
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
39-221 3.82e-104

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 308.67  E-value: 3.82e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  39 CKKAFDLYFVLDKSGSVANNWIEIYNFVHQLTERFVSPEMRLSFIVFSSQATIILPLTGDRYKIGKGLEDLKAVKPVGET 118
Cdd:cd01474   1 CAGHFDLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQT 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 119 YIHEGLKLANEQI--QNAGGLKASSIIIALTDGKLDGLVPSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIADSKDQV 196
Cdd:cd01474  81 YIHEGLENANEQIfnRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTDFLKSQLINIADSKEYV 160
                       170       180
                ....*....|....*....|....*
gi 50355939 197 FPVKGGFQALKGIINSILAQSCTEI 221
Cdd:cd01474 161 FPVTSGFQALSGIIESVVKKACIEI 185
Ant_C pfam05586
Anthrax receptor C-terminus region; This region is found in the putatively cytoplasmic ...
394-485 3.67e-52

Anthrax receptor C-terminus region; This region is found in the putatively cytoplasmic C-terminus of the anthrax receptor.


Pssm-ID: 461683  Cd Length: 93  Bit Score: 171.33  E-value: 3.67e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   394 VRWGDKGSTEEGARLEKAKNAVVMVPEEEIPIPSRPPRPRPTHQAP-QTKWYTPIKGRLDALWALIMKQYDRVSLMRPQE 472
Cdd:pfam05586   1 VRWGEKGSTEEGAKLEKAKNAVVKMPEEEEEPPEPRPRKPPARKPPpQRKWYTPIKGKLDALWALLRRGYDRVSLMRPTP 80
                          90
                  ....*....|...
gi 50355939   473 GDEGRCINFSRVP 485
Cdd:pfam05586  81 GDKGRCINFTRVK 93
Anth_Ig pfam05587
Anthrax receptor extracellular domain; This region is found in the putatively extracellular ...
216-317 2.69e-50

Anthrax receptor extracellular domain; This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to pfam01833 (personal obs: C Yeats).


Pssm-ID: 461684  Cd Length: 102  Bit Score: 166.66  E-value: 2.69e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   216 QSCTEILELSPSSVCVGEKFQVVLTGRAVTSISHDGSVLCTFTANSTYTKSEKPVSIQPSSILCPAPVLNKDGETLEVSI 295
Cdd:pfam05587   1 KSCIEILSVEPSSVCVGESFQVVLRGRGFNNAKNIDEVLCRFTINETTVYNEKPSSVQDNSILCPAPVLNEAGQTLDVLV 80
                          90       100
                  ....*....|....*....|..
gi 50355939   296 SYNDGKSAVSRSLTITATECTN 317
Cdd:pfam05587  81 SLNNGKSFISSSLTITATTCSD 102
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
43-194 9.50e-25

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 100.06  E-value: 9.50e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  43 FDLYFVLDKSGSVAN-NWIEIYNFVHQLTERFVSPE--MRLSFIVFSSQATIILPLTgDRYKIGKGLEDLKAVKPVG--E 117
Cdd:cd01450   1 LDIVFLLDGSESVGPeNFEKVKDFIEKLVEKLDIGPdkTRVGLVQYSDDVRVEFSLN-DYKSKDDLLKAVKNLKYLGggG 79
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50355939 118 TYIHEGLKLANEQI--QNAGGLKASSIIIALTDGKLDGLvpSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIADSKD 194
Cdd:cd01450  80 TNTGKALQYALEQLfsESNARENVPKVIIVLTDGRSDDG--GDPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCPS 156
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
44-191 7.13e-20

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 86.47  E-value: 7.13e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVANNWIEI-YNFVHQLTERFV--SPEMRLSFIVFSSQATIILPLTGDRYK--IGKGLEDLKAvKPVGET 118
Cdd:cd00198   2 DIVFLLDVSGSMGGEKLDKaKEALKALVSSLSasPPGDRVGLVTFGSNARVVLPLTTDTDKadLLEAIDALKK-GLGGGT 80
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 50355939 119 YIHEGLKLANEQIQNAGGLKASSIIIALTDGKLDGLVPSYAEnEAKKSRSLGASVYCVGV-LDFEQAQLERIAD 191
Cdd:cd00198  81 NIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAE-AARELRKLGITVYTIGIgDDANEDELKEIAD 153
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
44-197 1.89e-19

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 85.58  E-value: 1.89e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939     44 DLYFVLDKSGSVANNWIEIY-NFVHQLTERF--VSPEMRLSFIVFSSQATIILPL--TGDRYKIGKGLEDLKaVKPVGET 118
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAkEFVLKLVEQLdiGPDGDRVGLVTFSDDARVLFPLndSRSKDALLEALASLS-YKLGGGT 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939    119 YIHEGLKLANEQI---QNAGGLKASSIIIALTDGKLDGLVPSYAENeAKKSRSLGASVYCVGV-LDFEQAQLERIADSKD 194
Cdd:smart00327  80 NLGAALQYALENLfskSAGSRRGAPKVVILITDGESNDGPKDLLKA-AKELKRSGVKVFVVGVgNDVDEEELKKLASAPG 158

                   ...
gi 50355939    195 QVF 197
Cdd:smart00327 159 GVY 161
VWA pfam00092
von Willebrand factor type A domain;
44-197 1.36e-17

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 80.40  E-value: 1.36e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939    44 DLYFVLDKSGSV-ANNWIEIYNFVHQLTERF-VSPE-MRLSFIVFSSQATIILPLTGDRYKigkglED-LKAVKPV---- 115
Cdd:pfam00092   1 DIVFLLDGSGSIgGDNFEKVKEFLKKLVESLdIGPDgTRVGLVQYSSDVRTEFPLNDYSSK-----EElLSAVDNLrylg 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   116 -GETYIHEGLKLANEQI---QNAGGLKASSIIIALTDGKLDGlvpSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIAD 191
Cdd:pfam00092  76 gGTTNTGKALKYALENLfssAAGARPGAPKVVVLLTDGRSQD---GDPEEVARELKSAGVTVFAVGVGNADDEELRKIAS 152

                  ....*.
gi 50355939   192 SKDQVF 197
Cdd:pfam00092 153 EPGEGH 158
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
5-213 3.89e-17

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 81.14  E-value: 3.89e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   5 RSRARSPGSWLFPGLWLLAVGGPGSLLQAQEQPSCKKAFDLYFVLDKSGS-VANNWIE-----IYNFVHQLTERfvspeM 78
Cdd:COG1240  55 GLGLLALLLAALLLLLAVLLLLLALALAPLALARPQRGRDVVLVVDASGSmAAENRLEaakgaLLDFLDDYRPR-----D 129
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  79 RLSFIVFSSQATIILPLTGDRYKIGKGLEDLkavKPVGETYIHEGLKLANEQIQNAGGlKASSIIIALTDGKLDGLVPSY 158
Cdd:COG1240 130 RVGLVAFGGEAEVLLPLTRDREALKRALDEL---PPGGGTPLGDALALALELLKRADP-ARRKVIVLLTDGRDNAGRIDP 205
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 50355939 159 AEnEAKKSRSLGASVYCVGVLD--FEQAQLERIADSKD-QVFPVkGGFQALKGIINSI 213
Cdd:COG1240 206 LE-AAELAAAAGIRIYTIGVGTeaVDEGLLREIAEATGgRYFRA-DDLSELAAIYREI 261
YfbK COG2304
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ...
13-191 3.20e-16

Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];


Pssm-ID: 441879 [Multi-domain]  Cd Length: 289  Bit Score: 78.99  E-value: 3.20e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  13 SWLFPGLWLLAVGGPGSLLQAQEQPsckkAFDLYFVLDKSGSVANNWIE-----IYNFVHQLTerfvsPEMRLSFIVFSS 87
Cdd:COG2304  66 SPWNPQTRLLLVGLQPPKAAAEERP----PLNLVFVIDVSGSMSGDKLElakeaAKLLVDQLR-----PGDRVSIVTFAG 136
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  88 QATIILPLT--GDRYKIgkgLEDLKAVKPVGETYIHEGLKLANEQIQNAGGLKASSIIIALTDGKLD-GLV-PSYAENEA 163
Cdd:COG2304 137 DARVLLPPTpaTDRAKI---LAAIDRLQAGGGTALGAGLELAYELARKHFIPGRVNRVILLTDGDANvGITdPEELLKLA 213
                       170       180
                ....*....|....*....|....*....
gi 50355939 164 KKSRSLGASVYCVGV-LDFEQAQLERIAD 191
Cdd:COG2304 214 EEAREEGITLTTLGVgSDYNEDLLERLAD 242
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
44-190 4.06e-13

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 67.80  E-value: 4.06e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVANNWIEIY-NFVHQLTERFVSPEM--------RLSFIVFSSQATIILPLTGDRYKIGKGLEDLKAVKP 114
Cdd:cd01480   4 DITFVLDSSESVGLQNFDITkNFVKRVAERFLKDYYrkdpagswRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDNLEY 83
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 50355939 115 VGE-TYIHEGLKLANEQIQNAGGLKASSIIIALTDGKLDGLVPSYAENEAKKSRSLGASVYCVGVLDFEQAQLERIA 190
Cdd:cd01480  84 IGGgTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
44-178 9.80e-11

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 60.86  E-value: 9.80e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVA-NNWieiYNFVHQLTERFV-----SP-EMRLSFIVFSSQATIILPLTG----DRYKIGKGLEDLKAV 112
Cdd:cd01471   2 DLYLLVDGSGSIGySNW---VTHVVPFLHTFVqnlniSPdEINLYLVTFSTNAKELIRLSSpnstNKDLALNAIRALLSL 78
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50355939 113 -KPVGETYIHEGLKLANEQIQNAGGLK--ASSIIIALTDGKLDGlvPSYAENEAKKSRSLGASVYCVGV 178
Cdd:cd01471  79 yYPNGSTNTTSALLVVEKHLFDTRGNRenAPQLVIIMTDGIPDS--KFRTLKEARKLRERGVIIAVLGV 145
VWA_2 pfam13519
von Willebrand factor type A domain;
45-144 1.66e-10

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 58.07  E-value: 1.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939    45 LYFVLDKSGSVANNWIEIYNFVHQ--LTERFVS--PEMRLSFIVFSSQATIILPLTGDRYKIGKGLEDLKAVKpvGETYI 120
Cdd:pfam13519   1 LVFVLDTSGSMRNGDYGPTRLEAAkdAVLALLKslPGDRVGLVTFGDGPEVLIPLTKDRAKILRALRRLEPKG--GGTNL 78
                          90       100
                  ....*....|....*....|....
gi 50355939   121 HEGLKLANEQIQNAGGLKASSIII 144
Cdd:pfam13519  79 AAALQLARAALKHRRKNQPRRIVL 102
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
44-199 4.71e-10

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 58.39  E-value: 4.71e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVA-NNWIEIYNFVHQLTERF-VSPE-MRLSFIVFSSQATIILPLtgDRYKIGKGLedLKAVKPV----G 116
Cdd:cd01472   2 DIVFLVDGSESIGlSNFNLVKDFVKRVVERLdIGPDgVRVGVVQYSDDPRTEFYL--NTYRSKDDV--LEAVKNLryigG 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 117 ETYIHEGLKLANEQI---QNAGGLKASSIIIALTDGKL--DGLVPSYAEneakksRSLGASVYCVGVLDFEQAQLERIAD 191
Cdd:cd01472  78 GTNTGKALKYVRENLfteASGSREGVPKVLVVITDGKSqdDVEEPAVEL------KQAGIEVFAVGVKNADEEELKQIAS 151
                       170
                ....*....|
gi 50355939 192 SK--DQVFPV 199
Cdd:cd01472 152 DPkeLYVFNV 161
ViaA COG2425
Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain ...
2-191 1.24e-09

Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain [Function unknown];


Pssm-ID: 441973 [Multi-domain]  Cd Length: 263  Bit Score: 58.92  E-value: 1.24e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939   2 VAGRSRARSPGSWLFPGLWLLAVGGPGSLLQAQEQPsckkAFDLYFVLDKSGSVANNWIEIYNFVHQLTERFVSPEMRLS 81
Cdd:COG2425  82 AALLDALLLAVLLLALLLLAALLLLAAPASAAVPLL----EGPVVLCVDTSGSMAGSKEAAAKAAALALLRALRPNRRFG 157
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  82 FIVFSSQATIILPLTGDRyKIGKGLEDLKAVKPVGETYIHEGLKLANEQIQNAGGLKAssIIIALTDGKlDGLVPSYAEN 161
Cdd:COG2425 158 VILFDTEVVEDLPLTADD-GLEDAIEFLSGLFAGGGTDIAPALRAALELLEEPDYRNA--DIVLITDGE-AGVSPEELLR 233
                       170       180       190
                ....*....|....*....|....*....|.
gi 50355939 162 EAKKSRSlGASVYCVGVLDF-EQAQLERIAD 191
Cdd:COG2425 234 EVRAKES-GVRLFTVAIGDAgNPGLLEALAD 263
vWA_subgroup cd01465
VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
45-194 5.26e-09

VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.


Pssm-ID: 238742 [Multi-domain]  Cd Length: 170  Bit Score: 55.36  E-value: 5.26e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  45 LYFVLDKSGSVANNWIEIynfVHQLTERFVS---PEMRLSFIVFSSQATIILPLT--GDRYKIgkgLEDLKAVKPVGETY 119
Cdd:cd01465   3 LVFVIDRSGSMDGPKLPL---VKSALKLLVDqlrPDDRLAIVTYDGAAETVLPATpvRDKAAI---LAAIDRLTAGGSTA 76
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 50355939 120 IHEGLKLANEQIQNAGGLKASSIIIALTDGKLDGLVPSYAENE--AKKSRSLGASVYCVGVLD-FEQAQLERIADSKD 194
Cdd:cd01465  77 GGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELArlVAQKRESGITLSTLGFGDnYNEDLMEAIADAGN 154
vWA_BatA_type cd01467
VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
44-178 2.97e-08

VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.


Pssm-ID: 238744 [Multi-domain]  Cd Length: 180  Bit Score: 53.49  E-value: 2.97e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVAnnwieIYNFVH--------QLTERFVS--PEMRLSFIVFSSQATIILPLTGDRYKIGKGLEDLKaVK 113
Cdd:cd01467   4 DIMIALDVSGSML-----AQDFVKpsrleaakEVLSDFIDrrENDRIGLVVFAGAAFTQAPLTLDRESLKELLEDIK-IG 77
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50355939 114 PVG-ETYIHEGLKLANEQIQNAgglKASS-IIIALTDGK--LDGLVPSYAENEAKksrSLGASVYCVGV 178
Cdd:cd01467  78 LAGqGTAIGDAIGLAIKRLKNS---EAKErVIVLLTDGEnnAGEIDPATAAELAK---NKGVRIYTIGV 140
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
44-201 2.55e-07

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 50.36  E-value: 2.55e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVA-NNWIEIYNFVHQLTERF-VSPE-MRLSFIVFSSQATIILPLtgDRYKIGKGLedLKAVKPV----G 116
Cdd:cd01482   2 DIVFLVDGSWSIGrSNFNLVRSFLSSVVEAFeIGPDgVQVGLVQYSDDPRTEFDL--NAYTSKEDV--LAAIKNLpykgG 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 117 ETYIHEGLKLANEQI-QNAGGLK--ASSIIIALTDGKLDGLVpsyaENEAKKSRSLGASVYCVGVLDFEQAQLERIAD-- 191
Cdd:cd01482  78 NTRTGKALTHVREKNfTPDAGARpgVPKVVILITDGKSQDDV----ELPARVLRNLGVNVFAVGVKDADESELKMIASkp 153
                       170
                ....*....|
gi 50355939 192 SKDQVFPVKG 201
Cdd:cd01482 154 SETHVFNVAD 163
vWA_C3HC4_type cd01466
VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood ...
44-150 2.22e-04

VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Membes of this subgroup belong to Zinc-finger family as they are found fused to RING finger domains. The MIDAS motif is not conserved in all the members of this family. The function of vWA domains however is not known.


Pssm-ID: 238743 [Multi-domain]  Cd Length: 155  Bit Score: 41.61  E-value: 2.22e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVANNWIEIYnfvhQLTERFV----SPEMRLSFIVFSSQATIILPLtgdRYKIGKGLEDLKAV----KPV 115
Cdd:cd01466   2 DLVAVLDVSGSMAGDKLQLV----KHALRFVisslGDADRLSIVTFSTSAKRLSPL---RRMTAKGKRSAKRVvdglQAG 74
                        90       100       110
                ....*....|....*....|....*....|....*
gi 50355939 116 GETYIHEGLKLANEQIQNAGGLKASSIIIALTDGK 150
Cdd:cd01466  75 GGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQ 109
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
44-197 3.28e-04

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 41.23  E-value: 3.28e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSVANNWIEIYNFVHQLTERF-VSPE-MRLSFIVFSSQAT----IILPLTGDRYKIGKGLEDLKAVKpvGE 117
Cdd:cd01476   2 DLLFVLDSSGSVRGKFEKYKKYIERIVEGLeIGPTaTRVALITYSGRGRqrvrFNLPKHNDGEELLEKVDNLRFIG--GT 79
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 118 TYIHEGLKLANEQIQNAGGLKAS--SIIIALTDGKLDGLVpsyaENEAKKSRSL-GASVYCVGVLD---FEQAQLERIAD 191
Cdd:cd01476  80 TATGAAIEVALQQLDPSEGRREGipKVVVVLTDGRSHDDP----EKQARILRAVpNIETFAVGTGDpgtVDTEELHSITG 155

                ....*.
gi 50355939 192 SKDQVF 197
Cdd:cd01476 156 NEDHIF 161
TerY COG4245
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
40-150 4.57e-04

Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];


Pssm-ID: 443387 [Multi-domain]  Cd Length: 196  Bit Score: 41.45  E-value: 4.57e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  40 KKAFDLYFVLDKSGSVANNWIEIYN-----FVHQL-TERFVSPEMRLSFIVFSSQATIILPLTgdrykigkgleDLKAVK 113
Cdd:COG4245   3 MRRLPVYLLLDTSGSMSGEPIEALNeglqaLIDELrQDPYALETVEVSVITFDGEAKVLLPLT-----------DLEDFQ 71
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 50355939 114 PV-----GETYIHEGLKLANEQIQNAGGLKASS-------IIIALTDGK 150
Cdd:COG4245  72 PPdlsasGGTPLGAALELLLDLIERRVQKYTAEgkgdwrpVVFLITDGE 120
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
44-209 1.10e-03

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 40.03  E-value: 1.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  44 DLYFVLDKSGSV-ANNWIEIYNFVHQLTERF--VSPEMRLSFIVFSSQATIILPLTGDRYKigkgLEDLKAVKPV----G 116
Cdd:cd01469   2 DIVFVLDGSGSIyPDDFQKVKNFLSTVMKKLdiGPTKTQFGLVQYSESFRTEFTLNEYRTK----EEPLSLVKHIsqllG 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 117 ETYIHEGLKLANEQI---QNAGGLKASSIIIALTDG-KLDGLVPSYAENEAKKSrslGASVYCVGVLDFEQA-----QLE 187
Cdd:cd01469  78 LTNTATAIQYVVTELfseSNGARKDATKVLVVITDGeSHDDPLLKDVIPQAERE---GIIRYAIGVGGHFQRensreELK 154
                       170       180
                ....*....|....*....|....
gi 50355939 188 RIADSKDQ--VFPVKgGFQALKGI 209
Cdd:cd01469 155 TIASKPPEehFFNVT-DFAALKDI 177
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
41-199 2.24e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 39.68  E-value: 2.24e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939  41 KAFDLYFVLDKSGSV-ANNWIEIYNFVHQLTERF-VSPEM-RLSFIVFSSQATIILPLTgdRYKIGKGLEdlKAVKPVG- 116
Cdd:cd01475   1 GPTDLVFLIDSSRSVrPENFELVKQFLNQIIDSLdVGPDAtRVGLVQYSSTVKQEFPLG--RFKSKADLK--RAVRRMEy 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50355939 117 -ETYIHEGLKL------ANEQIQNA--GGLKASSIIIALTDGKLDglvpSYAENEAKKSRSLGASVYCVGVLDFEQAQLE 187
Cdd:cd01475  77 lETGTMTGLAIqyamnnAFSEAEGArpGSERVPRVGIVVTDGRPQ----DDVSEVAAKARALGIEMFAVGVGRADEEELR 152
                       170
                ....*....|....
gi 50355939 188 RIAD--SKDQVFPV 199
Cdd:cd01475 153 EIASepLADHVFYV 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH