|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
396-920 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 721.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 396 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 473
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 474 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 553
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 554 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 633
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 634 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 713
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 714 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 792
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 793 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 872
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1676440542 873 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 920
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
965-1010 |
6.79e-27 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 103.62 E-value: 6.79e-27
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1676440542 965 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 1010
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
280-910 |
3.35e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.93 E-value: 3.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 280 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNSKsnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEm 359
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELE- 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 360 selllqqfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLqverdqyaENLKGESAMWQQRVQQMAEQVHTLKEE 439
Cdd:COG1196 271 ------------------ELRLELEELELELEEAQAEEYELLAEL--------ARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 440 KEHRERQVQELETSLAALRSQMEEPPPPEPpagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRL 519
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELE-----EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 520 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 599
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 600 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQG 679
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 680 KMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARA 759
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 760 EEEQARLRVQLkeqkarcrslshLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVE 839
Cdd:COG1196 640 VTLAGRLREVT------------LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676440542 840 ELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 910
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-703 |
1.43e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 169 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAEL 248
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEEL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 249 QTALAHTQQAARQKAGESEDLASRLQSSRQRV----GELERTLSTVSTQQKQADRYNKDLTKER-DALKLELYKNSKSNE 323
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 324 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFS-----------SQSSAAGGNEQLQHAMEERAQLET 392
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGYEA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 393 HVS-------------------QLMESLKQ----------LQVERDQYAENLKGESAMWQQRVQQMAEQVHT-------- 435
Cdd:TIGR02168 538 AIEaalggrlqavvvenlnaakKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrka 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 436 -------------------LKEEKEHRERQV---------------QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQ 481
Cdd:TIGR02168 618 lsyllggvlvvddldnaleLAKKLRPGYRIVtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 482 GEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNR--- 558
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeel 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 559 -ELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 637
Cdd:TIGR02168 778 aEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 638 AAAY-----------QQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEvQGKMAAELARQELQEAQERLKATSQE 703
Cdd:TIGR02168 858 AAEIeeleelieeleSELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
189-699 |
5.61e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 5.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 189 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQkLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESED 268
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEE-LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 269 LASRLQSSRQRVGELERTLSTVSTQQKQADrynkdltKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAE-KAAAQ 347
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAE-------EELEEAEAEL-------AEAEEALLEAEAELAEAEEElEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 348 LGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQ 427
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 428 QMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKEL-----------ERLTG 496
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeaaleAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 497 QLRAQVQDNES-----LSHLNREQEGRL------------------LELEREAQRWSEQAEERKQILESMQSDRTTISRA 553
Cdd:COG1196 547 ALQNIVVEDDEvaaaaIEYLKAAKAGRAtflpldkiraraalaaalARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 554 LSQNREL--KEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCL 631
Cdd:COG1196 627 LVAARLEaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1676440542 632 SHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKA 699
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
280-910 |
6.94e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 6.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 280 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNS-----KSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 354
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 355 -KKLEMSELLLQQ----FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesAMWQQRVQQM 429
Cdd:TIGR02168 274 lEVSELEEEIEELqkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 430 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL- 508
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 509 ----SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 584
Cdd:TIGR02168 428 kkleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 585 LQSEQHVKKELARKLGELQER--------------LGELKETVELKSQEAQglqeqrDQCLSHLQQYAAAYQQHLAAYEQ 650
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELisvdegyeaaieaaLGGRLQAVVVENLNAA------KKAIAFLKQNELGRVTFLPLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 651 LTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQ----------ELQEAQERLK---------------------- 698
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKklrpgyrivtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 699 --ATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKAR 776
Cdd:TIGR02168 662 tgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 777 CRSLSHLAAPVQSKLEkEAVVPRNVDDSASEESNQALHVA---MEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETD 853
Cdd:TIGR02168 742 VEQLEERIAQLSKELT-ELEAEIEELEERLEEAEEELAEAeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676440542 854 TIGEYIALYQNQRA-------VLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 910
Cdd:TIGR02168 821 NLRERLESLERRIAaterrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
323-621 |
6.49e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 6.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 323 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 402
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--RKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 403 QLQVERDQYAENLKGESAMWQQRVQQMAEqvhtLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQG 482
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL--RERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 483 EVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ----AEERKQILESMQSDRTTISRALSQNR 558
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraslEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676440542 559 ELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQ 621
Cdd:TIGR02168 912 ELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-899 |
2.44e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 169 ELENRYQELAVALDssyvtNKQLSSTIEELKQQNqDTLDQLEKEKKDYQQKLAKEQgslrEQLQVHIQTIGILVSEKAEL 248
Cdd:TIGR02168 210 EKAERYKELKAELR-----ELELALLVLRLEELR-EELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 249 QTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQ 328
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 329 NSELEEKLRVLVAEKAAAQLGVEELQKKLemSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVER 408
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKV--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 409 DQYA-ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPA-GPSEAEEQLQGEVEQ 486
Cdd:TIGR02168 438 LQAElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLeGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 487 LHKELERLTGQLRAQ-------------------VQDNES----LSHLNREQEGRLLELEREAQRWSEQAEERKQILESM 543
Cdd:TIGR02168 518 LSGILGVLSELISVDegyeaaieaalggrlqavvVENLNAakkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 544 QSDRTTISRALSQNRELKEQLAELQNGFV------------RLTNENMEI--------------TSALQSEQHVKKELAR 597
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnalelaKKLRPGYRIvtldgdlvrpggviTGGSAKTNSSILERRR 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 598 KLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEV 677
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 678 QGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaipEDLDSREAMVAFFNAAIA 757
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK------------------------EELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 758 RAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKEavvprNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKER 837
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL-----SEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440542 838 VEELEHCCIQLSGETDTIGEyialyqnQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQE 899
Cdd:TIGR02168 889 LALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
257-640 |
3.50e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 3.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 257 QAARQKAGESEDLASRLQSsrqRVGELERTLSTVSTQQKQADRYNKDLTKERDalkLELYKNSKSNEDLRQQNSELEEKL 336
Cdd:TIGR02169 173 EKALEELEEVEENIERLDL---IIDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 337 RVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ--------HAMEERAQ-----LETHVSQLMESLKQ 403
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLErsiaeKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 404 LQVERDQY---AENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQL 480
Cdd:TIGR02169 327 LEAEIDKLlaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---------EKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 481 QGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQnreL 560
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 561 KEQLAELQNgfvrltnenmEITSAlqseqhvKKELARKLGELQ---ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 637
Cdd:TIGR02169 475 KEEYDRVEK----------ELSKL-------QRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537
|
...
gi 1676440542 638 AAA 640
Cdd:TIGR02169 538 ATA 540
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
136-697 |
4.60e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 4.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 136 TESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKD 215
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA-------ELEEELEELEEELEELEEELEEAEEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 216 YQQKLAKEQGSLREQLQvhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK 295
Cdd:COG1196 353 LEEAEAELAEAEEALLE--------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 296 QADRYNKDLTKERDALKLELyknsksnedlrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAG 375
Cdd:COG1196 425 ELEEALAELEEEEEEEEEAL--------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 376 GNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 455
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 456 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLshlnrEQEGRLLELEREAQRWSEQAEE 535
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL-----GRTLVAARLEAALRRAVTLAGR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 536 RKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 615
Cdd:COG1196 646 LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEA 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 616 KSQEAQGLQEQRDQclsHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLqheevqGK--MAAElarQELQEA 693
Cdd:COG1196 726 LEEQLEAEREELLE---ELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL------GPvnLLAI---EEYEEL 793
|
....
gi 1676440542 694 QERL 697
Cdd:COG1196 794 EERY 797
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
163-494 |
4.02e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 4.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 163 TSSNMKELENRYQELAVALDssyvtnkQLSSTIEELKQQNQDTLDQLEKEKKDYQQKlAKEQGSLREQLQVHIQTIGILV 242
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 243 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 322
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 323 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSsqssaaggnEQLQHAMEERAQLETHVSQLMESLK 402
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---------SELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 403 QLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAlRSQMEEPPPPEPPAGPSEAEEQLQG 482
Cdd:TIGR02168 898 ELSEELRELESKRSEL----RRELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEARR 972
|
330
....*....|..
gi 1676440542 483 EVEQLHKELERL 494
Cdd:TIGR02168 973 RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
406-697 |
1.27e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 406 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVE 485
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL--EAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 486 QLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQla 565
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 566 eLQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRdqclshlqqyaaayQQHL 645
Cdd:TIGR02168 829 -LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL--------------ALLR 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1676440542 646 AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERL 697
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
187-542 |
3.97e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 187 TNKQLSSTIEELKQQnQDTLDQLEKEKKDY--QQKLAKEQGSLREQLQvHIQtIGILVSEKAELQTALAHTQQAARQKAG 264
Cdd:TIGR02168 177 TERKLERTRENLDRL-EDILNELERQLKSLerQAEKAERYKELKAELR-ELE-LALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 265 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 344
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 345 AAQLGVEELQKKLEmselllqqfssqssaaggneQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQ 424
Cdd:TIGR02168 334 ELAEELAELEEKLE--------------------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 425 RVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE---AEEQLQGEVEQLHKELERLTGQLRAQ 501
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEleeELEELQEELERLEEALEELREELEEA 473
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1676440542 502 VQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILES 542
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-614 |
8.90e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 265 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 344
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 345 AAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA---ENLKGESAM 421
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRerlESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 422 WQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEE-----PPPPEPPAGPSEAEEQLQGEVEQLHKELERLTG 496
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 497 QLRAQvqdNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTisralsQNRELKEQLAELQNGFVRLTN 576
Cdd:TIGR02168 916 ELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED------DEEEARRRLKRLENKIKELGP 986
|
330 340 350
....*....|....*....|....*....|....*...
gi 1676440542 577 ENMEITSALQSEQHVKKELARKLGELQERLGELKETVE 614
Cdd:TIGR02168 987 VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
169-698 |
3.51e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 169 ELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILvsekAEL 248
Cdd:pfam15921 114 DLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVL----QEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 249 QTALAHTQQAARQKAGESEDLAS-RLQSSRQRVGELERTLSTvstqqkqadrynkdltkERDALKLELYKNSKSNEDLRq 327
Cdd:pfam15921 190 RSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDT-----------------EISYLKGRIFPVEDQLEALK- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 328 qnSELEEKLRVLVAEKaaaQLGVEEL--QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEeraQLETHVSQLMESLKQLQ 405
Cdd:pfam15921 252 --SESQNKIELLLQQH---QDRIEQLisEHEVEITGLTEKASSARSQANSIQSQLEIIQE---QARNQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 406 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMeepppPEPPAGPSEAEEQLQGEVE 485
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL-----QKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 486 QLHKELERLTGqlraqvqDNESLSHLNREQEGRLLELER-EAQRWSEQAEERKQILESM---QSDRTTISRALSQNRELK 561
Cdd:pfam15921 399 QNKRLWDRDTG-------NSITIDHLRRELDDRNMEVQRlEALLKAMKSECQGQMERQMaaiQGKNESLEKVSSLTAQLE 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 562 EQLAELQNGFVRLTNENMEITSALQSEQHVK---KELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYA 638
Cdd:pfam15921 472 STKEMLRKVVEELTAKKMTLESSERTVSDLTaslQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTEC 550
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440542 639 AAYQQHLAayeqltsEKEAIHKQLLLQTQLMDQL--QHEEVQGKMAAELARQELQEAQERLK 698
Cdd:pfam15921 551 EALKLQMA-------EKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
323-673 |
5.44e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 60.36 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 323 EDLRQQNSELEEKLrvlvaekAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 402
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 403 QLQVERDQYAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppe 468
Cdd:PRK04863 862 QQRSQLEQAKEGLSALNRLlprlnlladetLADRVEEIREQLDEAEEAKRFVQQHgnaLAQLEPIVSVLQS--------- 932
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 469 ppagPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQILESMQSDRt 548
Cdd:PRK04863 933 ----DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN------EKLRQRLEQAEQER- 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 549 tisralsqnRELKEQLAELQNGFvrltNENMEITSALQSEQHVKKELarkLGELQERLGELkeTVELKSQEAQGLQEQRD 628
Cdd:PRK04863 1002 ---------TRAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1676440542 629 QClshlqqyaaaYQQHLAAYEQltseKEAIHKQLLLQTQLMDQLQ 673
Cdd:PRK04863 1064 EL----------HARLSANRSR----RNQLEKQLTFCEAEMDNLT 1094
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-506 |
6.26e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 6.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 227 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 306
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 307 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKL-----EMSELLLQQFSSQSSAAGGNEQLQ 381
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 382 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 461
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1676440542 462 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNE 506
Cdd:TIGR02168 918 EELR---------EKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
195-703 |
1.84e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 195 IEELKQQnQDTLDQLEKEKKDYQQKLAK--EQGSLREQLQVHIQTIgilvsEKAELQTALAHTQQAARQKAGESEDLASR 272
Cdd:COG4913 244 LEDAREQ-IELLEPIRELAERYAAARERlaELEYLRAALRLWFAQR-----RLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 273 LQSSRQRVGELERTLSTVSTQQKQadrynkDLTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 352
Cdd:COG4913 318 LDALREELDELEAQIRGNGGDRLE------QLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 353 LQKKL---------EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqveRDQYAENL-------- 415
Cdd:COG4913 385 LRAEAaallealeeELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALgldeaelp 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 416 --------KGESAMWQ---------------------QRVQ------QMAEQVHTLKEEKEHRERQVQEL-ETSLAA-LR 458
Cdd:COG4913 462 fvgelievRPEEERWRgaiervlggfaltllvppehyAAALrwvnrlHLRGRLVYERVRTGLPDPERPRLdPDSLAGkLD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 459 SQmeeppppeppagPSEAEEQLQGE------------VEQLHKELERLT--GQL-----RAQVQDNESLSHL------NR 513
Cdd:COG4913 542 FK------------PHPFRAWLEAElgrrfdyvcvdsPEELRRHPRAITraGQVkgngtRHEKDDRRRIRSRyvlgfdNR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 514 EQ----EGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN------RELKEQLAELQNGFVRLTNENMEIts 583
Cdd:COG4913 610 AKlaalEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL-- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 584 alqseqhvkKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQhlaayeqlTSEKEAIHKQLL 663
Cdd:COG4913 688 ---------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA--------AEDLARLELRAL 750
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1676440542 664 LQTQLmDQLQHEEVQGKMAAELaRQELQEAQERLKATSQE 703
Cdd:COG4913 751 LEERF-AAALGDAVERELRENL-EERIDALRARLNRAEEE 788
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
192-614 |
3.28e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 192 SSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLAS 271
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 272 RLQSSRQRVGELERTLSTVSTQQKQADRYNKdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAaqlgVE 351
Cdd:PRK03918 267 RIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER----LE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 352 ELQKKLEMSELLLQQFssqssaaggneqlqhamEERAQLETHVSQLMESLKQLQVERDQYA-ENLKGESAMWQQRVQQMA 430
Cdd:PRK03918 342 ELKKKLKELEKRLEEL-----------------EERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 431 EQVHTLKEEKEHRERQVQELETSLAALRSqmeePPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSH 510
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKK----AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 511 LNREQEGRLLElEREAQRWSEQAEERKQILESMQS-DRTTISRALSQNRELKEQLAELQnGFVRLTNENMEITSALQSEq 589
Cdd:PRK03918 481 ELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLK-GEIKSLKKELEKLEELKKK- 557
|
410 420
....*....|....*....|....*
gi 1676440542 590 hvKKELARKLGELQERLGELKETVE 614
Cdd:PRK03918 558 --LAELEKKLDELEEELAELLKELE 580
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
278-618 |
5.44e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 57.06 E-value: 5.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 278 QRVGELERTLSTVSTQQKQAD-RYNKDLTKERDALK--LELYKNSKSNEDlRQQNSELEEKLRVLVAEKAAAQLGVEELQ 354
Cdd:pfam17380 237 ERRKESFNLAEDVTTMTPEYTvRYNGQTMTENEFLNqlLHIVQHQKAVSE-RQQQEKFEKMEQERLRQEKEEKAREVERR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 355 KKLEMSELLlQQFSSQSSAAGGNEQLQHAME-----ERAQLETHVSQlMESLKQ----LQVERDQYAENLKGESAMWQQR 425
Cdd:pfam17380 316 RKLEEAEKA-RQAEMDRQAAIYAEQERMAMErerelERIRQEERKRE-LERIRQeeiaMEISRMRELERLQMERQQKNER 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 426 VQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpseaEEQLQGEVEQLHKELERLTGQLRAQVQDN 505
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-----------QREVRRLEEERAREMERVRLEEQERQQQV 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 506 ESLSHLNREQEGRLLELEREAQRWSEQAEERKQILE-SMQSDRTTISRALSQNRELKEQLAELQNGFV----RLTNENME 580
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkELEERKQAMIEEERKRKLLEKEMEERQKAIYeeerRREAEEER 542
|
330 340 350
....*....|....*....|....*....|....*...
gi 1676440542 581 ITSALQSEQHVKKELARKLGELQERLGELKETVELKSQ 618
Cdd:pfam17380 543 RKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
475-842 |
8.68e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.50 E-value: 8.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 475 EAEEQLQGEVEQLH----------KELERLTGQLRAQVQDNESLS-HLNREQEG---------RLLELEREAQRWSEQAE 534
Cdd:COG3096 289 ELRRELFGARRQLAeeqyrlvemaRELEELSARESDLEQDYQAASdHLNLVQTAlrqqekierYQEDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 535 ERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFvrltneNMEITSALQSEQHVK-KELARKLGELQERLGE-LKET 612
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAIQYQQAVQaLEKARALCGLPDLTPEnAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 613 VELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS-----EKEAIHKQlllQTQLMDQLQHEEVQGKMAAELaR 687
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQT---ARELLRRYRSQQALAQRLQQL-R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 688 QELQEAQERLKatSQENQQLQAQLSLLVLPGEGdvdqeeedeevpQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLR 767
Cdd:COG3096 519 AQLAELEQRLR--QQQNAERLLEEFCQRIGQQL------------DAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 768 VQLKEQKARCRSLSHLAaPV----QSKLEK--EAVvprnvddSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEEL 841
Cdd:COG3096 585 QQLEQLRARIKELAARA-PAwlaaQDALERlrEQS-------GEALADSQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
.
gi 1676440542 842 E 842
Cdd:COG3096 657 E 657
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
164-459 |
1.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 164 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYqQKLAKEQGSLREQLQVHIQTIGILVS 243
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLER 831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 244 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdltkERDALKLELYKNSKSNE 323
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE-------ALALLRSELEELSEELR 904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 324 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMselLLQQFSSQssaagGNEQLQHAMEERAQLETHVSQLMESLKQ 403
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDN---LQERLSEE-----YSLTLEEAEALENKIEDDEEEARRRLKR 976
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 404 LQVERDQYAE-NLkgeSAMwqqrvqqmaEQVHTLKEEKEHRERQVQELETSLAALRS 459
Cdd:TIGR02168 977 LENKIKELGPvNL---AAI---------EEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
280-702 |
1.10e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 280 VGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 359
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 360 SELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEE 439
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 440 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQ-------------LQGEVEQLHKELERLTGQLRA------ 500
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallaLLGLGGSLLSLILTIAGVLFLvlglla 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 501 ---QVQDNESLSHLNREQEGRLLELER--EAQRWSEQAEER-----------KQILESMQSDRTTISRALSQNRELK--E 562
Cdd:COG4717 288 llfLLLAREKASLGKEAEELQALPALEelEEEELEELLAALglppdlspeelLELLDRIEELQELLREAEELEEELQleE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 563 QLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVE--LKSQEAQGLQEQRDQCLSHLQQYAAA 640
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEelLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 641 YQQHLAAYEQLTSEKEAIHK-----QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQ 702
Cdd:COG4717 448 LEELREELAELEAELEQLEEdgelaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
137-614 |
1.12e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 137 ESLRQLSQQLNGLVSESTSYINGEGLTSSNMK-------ELENRYQELAVALDSSYVTNKQLSSTIEELKQqNQDTLDQL 209
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEavearreELEDRDEELRDRLEECRVAAQAHNEEAESLRE-DADDLEER 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 210 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLST 289
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 290 VSTQQKQADRYnkdltkeRDALK-------LELYKNSKSNEDLRQQNSELEeklrvlvAEKAAAQLGVEELQKKLEMSEL 362
Cdd:PRK02224 438 ARERVEEAEAL-------LEAGKcpecgqpVEGSPHVETIEEDRERVEELE-------AELEDLEEEVEEVEERLERAED 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 363 LlqqfssqSSAAGGNEQLQHAMEERAQL-ETHVSQLMESLKQLQVERDQyAENLKGESAMWQQRVQQMAEQVHTLKEEKE 441
Cdd:PRK02224 504 L-------VEAEDRIERLEERREDLEELiAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAEEEAEEAREEVA 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 442 HRERQVQELETSLAALrsqmeeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNREQEGRLLE 521
Cdd:PRK02224 576 ELNSKLAELKERIESL-----------------ERIRTLLAAIADAEDEIERLREKR-------EALAELNDERRERLAE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 522 L-EREAQRWSEQAEERkqiLESMQSDRTTISRALSQN----RELKEQLAELQNgfvrltnenmEITSalqseqhVKKELA 596
Cdd:PRK02224 632 KrERKRELEAEFDEAR---IEEAREDKERAEEYLEQVeeklDELREERDDLQA----------EIGA-------VENELE 691
|
490
....*....|....*...
gi 1676440542 597 RkLGELQERLGELKETVE 614
Cdd:PRK02224 692 E-LEELRERREALENRVE 708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
193-910 |
1.99e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 193 STIEELKQQNQDTLDQLEKEKKDYQQKL---AKEQGSLREQLQVHIQTigilvsEKAELQTALAHTQQAARQKAGESEDL 269
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLeelNKKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELEDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 270 ASRLQssrQRVGELERTLSTVSTQQKQADRYNKdltkERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 349
Cdd:TIGR02169 321 EERLA---KLEAEIDKLLAEIEELEREIEEERK----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 350 VEELQKKLEmselllqqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQM 429
Cdd:TIGR02169 394 LEKLKREIN---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 430 AEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE-----AEEQLQ-------GEVEQLHKELER---- 493
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraVEEVLKasiqgvhGTVAQLGSVGERyata 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 494 ----LTGQLRAQVQDNES-----LSHLNREQEGR------------------------------LLELEREAQRWSEQAE 534
Cdd:TIGR02169 541 ievaAGNRLNNVVVEDDAvakeaIELLKRRKAGRatflplnkmrderrdlsilsedgvigfavdLVEFDPKYEPAFKYVF 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 535 ERKQILESMQSDR--TTISRALSQNRELKEQLAELQNGFVrltnenmeitsALQSEQHVKKELARKLGELQERLGELKET 612
Cdd:TIGR02169 621 GDTLVVEDIEAARrlMGKYRMVTLEGELFEKSGAMTGGSR-----------APRGGILFSRSEPAELQRLRERLEGLKRE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 613 VELKSQEAQGLQEQRDQCLSHLQqyaAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH--------EEVQGKMAAE 684
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSleqeienvKSELKELEAR 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 685 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSslaIPEDLDSREAMVAFFNAAIARAEEEQA 764
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 765 RLRVQLKEQKARCRSLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHV--AMEKLQSRFLEVMQEKVELKERVEELE 842
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaQLRELERKIEELEAQIEKKRKRLSELK 923
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 843 HCCIQLSGETDTIGEYIALYQNQRA------VLKARHLEKEEYISRLA-------QDKEEMKVKLLELQELVLRLVNERN 909
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERK 1003
|
.
gi 1676440542 910 E 910
Cdd:TIGR02169 1004 A 1004
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
302-703 |
2.83e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 302 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ 381
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 382 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 461
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 462 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQvQDNESLSHLNREQ--EGRLLELEREAQRWSEQAEERKQI 539
Cdd:COG4717 209 AELE---------EELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLliAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 540 LESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKEL-----------ARKLGELQERLGE 608
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLspeellelldrIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 609 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELA-- 686
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEel 437
|
410
....*....|....*..
gi 1676440542 687 RQELQEAQERLKATSQE 703
Cdd:COG4717 438 EEELEELEEELEELREE 454
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
195-704 |
4.74e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 4.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 195 IEELKQQNQDTLDQLEKekkdyqQKLAKEQGSLREQLQVhiqtigiLVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 274
Cdd:PRK02224 178 VERVLSDQRGSLDQLKA------QIEEKEEKDLHERLNG-------LESELAELDEEIERYEEQREQARETRDEADEVLE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 275 SSRQRVGELERTLSTV--STQQKQADRynkdltKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 352
Cdd:PRK02224 245 EHEERREELETLEAEIedLRETIAETE------REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 353 LQKKLEmselllqqfssqssaaggnEQLQHAMEERAQLETHVSQlmeslkqlqverdqyAENLKGESAMWQQRVQQMAEQ 432
Cdd:PRK02224 319 LEDRDE-------------------ELRDRLEECRVAAQAHNEE---------------AESLREDADDLEERAEELREE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 433 VHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLShlN 512
Cdd:PRK02224 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAELEATLRTAR--E 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 513 REQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenmeiTSALQSEQH 590
Cdd:PRK02224 441 RVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-------EDLVEAEDR 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 591 VKKeLARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQ-QYAAAYQQHLAAYEQLtSEKEAIHKQLLLQTQLM 669
Cdd:PRK02224 511 IER-LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEeKREAAAEAEEEAEEAR-EEVAELNSKLAELKERI 588
|
490 500 510
....*....|....*....|....*....|....*
gi 1676440542 670 DQLQHEEVQGKMAAElARQELQEAQERLKATSQEN 704
Cdd:PRK02224 589 ESLERIRTLLAAIAD-AEDEIERLREKREALAELN 622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
168-698 |
5.39e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 168 KELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAkEQGSLREQLQVHIQTIGI-LVSEKA 246
Cdd:COG4913 305 ARLEAELERLEARLDA---LREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAALGLpLPASAE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 247 ELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQ----QKQADRYNKDLTKERDALKLELyknSKSN 322
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLLALRDALAEAL---GLDE 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 323 EDLR------QQNSELEE------------KLRVLVAEKAAAQ----------------LGVEELQKKLEMSEL----LL 364
Cdd:COG4913 458 AELPfvgeliEVRPEEERwrgaiervlggfALTLLVPPEHYAAalrwvnrlhlrgrlvyERVRTGLPDPERPRLdpdsLA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 365 QQFSSQSSAAGG--NEQLQHAM-----EERAQLETHVSQLME--------SLKQLQVERDQYAENLKGESAmwQQRVQQM 429
Cdd:COG4913 538 GKLDFKPHPFRAwlEAELGRRFdyvcvDSPEELRRHPRAITRagqvkgngTRHEKDDRRRIRSRYVLGFDN--RAKLAAL 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 430 AEQVHTLKEEKEHRERQVQELETSLAALRSQmeePPPPEPPAGPSEAEEqlqgEVEQLHKELERLTGQLRAQVQDNESLS 509
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQER---REALQRLAEYSWDEI----DVASAEREIAELEAELERLDASSDDLA 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 510 HLNREQEgrllELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENM-EITSALQSE 588
Cdd:COG4913 689 ALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfAAALGDAVE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 589 QHVKKELARKLGELQERLGELKETVELKSQEAqglQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS----EKEAIHKQLLL 664
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAF---NREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLN 841
|
570 580 590
....*....|....*....|....*....|....*.
gi 1676440542 665 Q--TQLMDQLQHEevqgkmaaelARQELQEAQERLK 698
Cdd:COG4913 842 EnsIEFVADLLSK----------LRRAIREIKERID 867
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
210-704 |
7.89e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 7.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 210 EKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTlst 289
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK--- 1310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 290 vSTQQKQADRYNK---DLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQ 366
Cdd:PTZ00121 1311 -AEEAKKADEAKKkaeEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 367 FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQ 446
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 447 VQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGE-----VEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLE 521
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAeakkkADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 522 LEREAQRwSEQAEERKQILESM--QSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKL 599
Cdd:PTZ00121 1550 ELKKAEE-LKKAEEKKKAEEAKkaEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA 1628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 600 GELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQlllqtqlMDQLQHEEVQG 679
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA-------AEALKKEAEEA 1701
|
490 500
....*....|....*....|....*..
gi 1676440542 680 KMAAELARQELQEAQ--ERLKATSQEN 704
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKkaEELKKAEEEN 1728
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
302-567 |
1.14e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 302 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVL--VAEKAAAQLGVEELQKKL-----EMSELL-----LQQFSS 369
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASAEREIaeleaELERLDassddLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 370 QSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQE 449
Cdd:COG4913 693 QLEEL--EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 450 LETSLAALRSQMeeppppeppagpSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNES-LSHLNREQEGRLLELEreaQR 528
Cdd:COG4913 771 LEERIDALRARL------------NRAEEELERAMRAFNREWPAETADLDADLESLPEyLALLDRLEEDGLPEYE---ER 835
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1676440542 529 WseqaeeRKQILESMQSDRTTISRALSQNREL-KEQLAEL 567
Cdd:COG4913 836 F------KELLNENSIEFVADLLSKLRRAIREiKERIDPL 869
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-866 |
1.41e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 190 QLSSTIEELKQQnQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDL 269
Cdd:TIGR02169 291 RVKEKIGELEAE-IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 270 ASRLQssrqrvgELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLG 349
Cdd:TIGR02169 370 RAELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 350 VEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMwQQRVQQM 429
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV-EEVLKAS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 430 AEQVH-TLKEEKEHRERQVQELETSLAA-------------------LRS---------------QMEEPPPPEPPAGPS 474
Cdd:TIGR02169 520 IQGVHgTVAQLGSVGERYATAIEVAAGNrlnnvvveddavakeaielLKRrkagratflplnkmrDERRDLSILSEDGVI 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 475 -------EAEEQLQGEVEQ------LHKELE---RLTGQLRAQVQDNESL---------SHLNREQEGRLLELEREAQRW 529
Cdd:TIGR02169 600 gfavdlvEFDPKYEPAFKYvfgdtlVVEDIEaarRLMGKYRMVTLEGELFeksgamtggSRAPRGGILFSRSEPAELQRL 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 530 SEQAEERKQILESMQSDRTTISRALSqnrELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGEL 609
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLD---ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 610 KETVELKSQEAQGLQEQrdqcLSHLQQYAAAYQQHLAAY-----EQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAE 684
Cdd:TIGR02169 757 KSELKELEARIEELEED----LHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 685 LARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLA-IPEDLDSREAMVAFFNAAIARAEEEQ 763
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdLKKERDELEAQLRELERKIEELEAQI 912
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 764 ARLRVQLKEQKARCRSL-SHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 842
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALeEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELK 992
|
730 740
....*....|....*....|....
gi 1676440542 843 HCCIQLSGETDTIGEYIALYQNQR 866
Cdd:TIGR02169 993 EKRAKLEEERKAILERIEEYEKKK 1016
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
167-530 |
1.80e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 167 MKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQdtldQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKA 246
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 247 ELQTALAHTQQAARQKAGESEDLASRLQSS--RQRVGELERTL---STVSTQQKQADRYNKDLTKERDALKLEL------ 315
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAalEERLKEARLLLliaAALLALLGLGGSLLSLILTIAGVLFLVLgllall 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 316 -YKNSKSNEDLRQQnselEEKLRVLVAEKAAAQLGVEELQKKLEMSELLlqqfsSQSSAAGGNEQLQHAMEERAQLETHV 394
Cdd:COG4717 290 fLLLAREKASLGKE----AEELQALPALEELEEEELEELLAALGLPPDL-----SPEELLELLDRIEELQELLREAEELE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 395 SQLmeSLKQLQVERDQYAENLKGES-AMWQQRVQQmAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGP 473
Cdd:COG4717 361 EEL--QLEELEQEIAALLAEAGVEDeEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEEL 437
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 474 SEAEEQLQGEVEQLHKELERLTGQLRaQVQDNESLSHLNREQEGRLLELEREAQRWS 530
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELE-QLEEDGELAELLQELEELKAELRELAEEWA 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
139-567 |
2.46e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 139 LRQLSQQLNGLVSESTSY---INGEGLTSSNMKELENRYQELAVALDS-----SYVTNKQLSSTIEELKQQNQDTLDQLE 210
Cdd:COG4717 73 LKELEEELKEAEEKEEEYaelQEELEELEEELEELEAELEELREELEKlekllQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 211 KEKKDYQQKLAKEQgSLREQLQvhiqtigilvSEKAELQTALAHTQQAARQkagESEDLASRLQSSRQRVGELERTLSTV 290
Cdd:COG4717 153 ERLEELRELEEELE-ELEAELA----------ELQEELEELLEQLSLATEE---ELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 291 STQQKQADRynkdltkerdalKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELL------- 363
Cdd:COG4717 219 QEELEELEE------------ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 364 -LQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEqvhtlkEEKEH 442
Cdd:COG4717 287 aLLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE------AEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 443 RERQVQELETSLAAL--RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQ--DNESLSHLNREQEGR 518
Cdd:COG4717 361 EELQLEELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEalDEEELEEELEELEEE 440
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1676440542 519 LLELEREAQRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAEL 567
Cdd:COG4717 441 LEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAELREL 488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
196-549 |
3.40e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 196 EELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVhiqtigilvSEKAELQTALAHTQQAARQKAGESEDLASRLQS 275
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK---------ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 276 SRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNS---KSNEDLR--QQNSELEEKLRVlvAEKAAAQLGV 350
Cdd:PTZ00121 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdelKKAEELKkaEEKKKAEEAKKA--EEDKNMALRK 1582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 351 EELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLET-----HVSQLMESLKQLQVERDQYAENLKGESAMWQQR 425
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 426 VQQM----------AEQVHTLKEEKEHRERQV-QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELE-- 492
Cdd:PTZ00121 1663 AAEEakkaeedkkkAEEAKKAEEDEKKAAEALkKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEed 1742
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1676440542 493 -RLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTT 549
Cdd:PTZ00121 1743 kKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
331-636 |
3.45e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 3.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 331 ELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ 410
Cdd:COG3096 789 ELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 411 YAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppeppagPSEA 476
Cdd:COG3096 869 LKEQLQLLNKLlpqanlladetLADRLEELREELDAAQEAQAFIQQHgkaLAQLEPLVAVLQS-------------DPEQ 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 477 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLElerEAQRWSEQAEERkqiLESMQSDRttisralsq 556
Cdd:COG3096 936 FEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLG---ENSDLNEKLRAR---LEQAEEAR--------- 1000
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 557 nRELKEQLAELQNgfvRLTNENMEITSaLQSEQHVKKELarkLGELQERLGELKETVELKSQE-AQGLQEQRDQCLSHLQ 635
Cdd:COG3096 1001 -REAREQLRQAQA---QYSQYNQVLAS-LKSSRDAKQQT---LQELEQELEELGVQADAEAEErARIRRDELHEELSQNR 1072
|
.
gi 1676440542 636 Q 636
Cdd:COG3096 1073 S 1073
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
228-618 |
3.78e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 228 REQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVST---QQKQADRYNKDL 304
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTalrQQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 305 tkerDALKLELYKNSKSNEDLRQQNSELEEKLRvlvaekaAAQLGVEELQKKLEMSElllQQFSSQSSAAGGNEQLQHAM 384
Cdd:PRK04863 358 ----EELEERLEEQNEVVEEADEQQEENEARAE-------AAEEEVDELKSQLADYQ---QALDVQQTRAIQYQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 385 EERAQL----ETHVSQLMESLKQLQVERDQYAENLKG------ESAMWQQRVQQMAEQVHTLKEEKEHRE--RQVQELET 452
Cdd:PRK04863 424 ERAKQLcglpDLTADNAEDWLEEFQAKEQEATEELLSleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEawDVARELLR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 453 SLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLhkeLERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ 532
Cdd:PRK04863 504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERL---LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 533 AEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKET 612
Cdd:PRK04863 581 RMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660
|
....*.
gi 1676440542 613 VELKSQ 618
Cdd:PRK04863 661 IERLSQ 666
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
269-493 |
3.80e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 269 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 348
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 349 GVEELQKKLE-----MSELL--LQQFSSQSS-----AAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLK 416
Cdd:COG4942 91 EIAELRAELEaqkeeLAELLraLYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 417 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELER 493
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---------QEAEELEALIARLEAEAAA 238
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
245-706 |
4.02e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 4.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 245 KAELQTALahtQQAARQKAGESEDLASrlqssrqrVGELERTLSTVstqqKQADRYNKDLtkerDALKLELyknSKSNED 324
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 325 LRQQNSELE--EKLRVLVAEKAAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMES 400
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 401 lkqlqverdqyaenlkgesamwQQRVQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQ 479
Cdd:PRK11281 169 ----------------------SQRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 480 LQGEVEQLHKELERLTGQLRAQVQDNESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRE 559
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 560 LKEQLAELQNGFVRLTNENMEIT----SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ----- 621
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 622 -GLQEQRDQcLSHLQQYAAAyqqhlaayeqltsekeaihkqlLLQTQlmdqlqheevQGKMAAELARQELQEAQERLKAT 700
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDK----------------------LEAGH----------KSEVTDEVRDALLQLLDERRELL 416
|
....*.
gi 1676440542 701 SQENQQ 706
Cdd:PRK11281 417 DQLNKQ 422
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
195-668 |
6.64e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 6.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 195 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQgsLREQLQVHIQTIGILVSEKAELQTALAHTQQAAR---------QKAGE 265
Cdd:TIGR00618 231 LREALQQTQQSHAYLTQKREAQEEQLKKQQ--LLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavtQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 266 SEDLASRLQSS-RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKN-SKSNEDLRQQNSELEEKLRVLVAEK 343
Cdd:TIGR00618 309 AQRIHTELQSKmRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEvATSIREISCQQHTLTQHIHTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 344 AAAQLGVEELQKKLEMSELLLQQFSSQSSA--------AGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENL 415
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAfrdlqgqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 416 KGESAMWQQrVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAE-EQLQGEVEQLHKELERL 494
Cdd:TIGR00618 469 KEREQQLQT-KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmQRGEQTYAQLETSEEDV 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 495 TGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQsdrttisRALSQNRELKEQLAELQNGFVRL 574
Cdd:TIGR00618 548 YHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-------DLTEKLSEAEDMLACEQHALLRK 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 575 TNENMEITSALQSEQHVKKELARKLGEL-QERLGELKETVELKSQEAQGLQEQRDQclshLQQYAAAYQQHLaaYEQLTS 653
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQELALKLTALhALQLTLTQERVREHALSIRVLPKELLA----SRQLALQKMQSE--KEQLTY 694
|
490
....*....|....*.
gi 1676440542 654 EKEAI-HKQLLLQTQL 668
Cdd:TIGR00618 695 WKEMLaQCQTLLRELE 710
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
474-701 |
6.76e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 474 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 553
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 554 LSQNRE-LKEQLAELQ-NGFVRLTNENMEITSALQSE------QHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 625
Cdd:COG4942 99 LEAQKEeLAELLRALYrLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676440542 626 QRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATS 701
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL-------AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
209-670 |
6.99e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 6.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 209 LEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLS 288
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 289 tvstqqkqadryNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEklrvLVAEKAAAQLGVEELQKKLEMsELLLQQFS 368
Cdd:COG4717 127 ------------LLPLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEE-LLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 369 SQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAmwQQRVQQMAEQ---------VHTLKEE 439
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaallaLLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 440 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEV------EQLHKELERLTGQLRAQVQDNESLSHLNR 513
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleeleeEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 514 EQEGRLLELEREAQR--WSEQAEERKQILESMQ-SDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALqsEQH 590
Cdd:COG4717 348 ELQELLREAEELEEElqLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 591 VKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 670
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
189-629 |
7.65e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 7.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 189 KQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQL------QVHIQTIGILVSEKAELQTALAHTQQAARQK 262
Cdd:pfam05483 355 EATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTkfknnkEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 263 AGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE 342
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLE 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 343 KAAAQlgvEELQKKLEMSELLLQQFSSQSsaaggneqlQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMW 422
Cdd:pfam05483 515 LKKHQ---EDIINCKKQEERMLKQIENLE---------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 423 QQRVQQMA---EQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLR 499
Cdd:pfam05483 583 LKKEKQMKileNKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAY--EIKVNKLELELASAKQKFEEIIDNYQ 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 500 AQVQDNESlshlnrEQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNenm 579
Cdd:pfam05483 661 KEIEDKKI------SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK--- 731
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1676440542 580 eitSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 629
Cdd:pfam05483 732 ---NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
244-697 |
8.53e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 8.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 244 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTvsTQQKQADRYNKDLTKERDALKLELYKnsksnE 323
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQ--DYQAASDHLNLVQTALRQQEKIERYQ-----E 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 324 DLrqqnSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELllqqfsSQSSAAGGNEQLQHAMEE---RAQLETHVSQLMES 400
Cdd:COG3096 355 DL----EELTERLEEQEEVVEEAAEQLAEAEARLEAAEE------EVDSLKSQLADYQQALDVqqtRAIQYQQAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 401 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSqmeeppppepPAGPSEAEEQL 480
Cdd:COG3096 425 ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK----------IAGEVERSQAW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 481 QGEVEQLhkeleRLTGQLRAQVQDNESLshlnreqEGRLLELEREaqrwseqaeerkqilesmqsdrttisraLSQNREL 560
Cdd:COG3096 495 QTARELL-----RRYRSQQALAQRLQQL-------RAQLAELEQR----------------------------LRQQQNA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 561 KEQLAELQNGFvrltneNMEITSALqseqhvkkELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAA 640
Cdd:COG3096 535 ERLLEEFCQRI------GQQLDAAE--------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 641 YQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHeEVQGKMAAELARQELQEAQERL 697
Cdd:COG3096 601 APAWLAAQDALERLREQSGEALADSQEVTAAMQQ-LLEREREATVERDELAARKQAL 656
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
123-689 |
9.32e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 9.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 123 CSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQN 202
Cdd:TIGR00618 269 IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 203 QDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGE 282
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 283 LERTLS---TVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 359
Cdd:TIGR00618 429 AKKQQElqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCG 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 360 SELLLQQFSSQSSAAGGNEQLQHAMEERAQ-----LETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVH 434
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletsEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPN 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 435 TLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNRE 514
Cdd:TIGR00618 589 LQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 515 QEGRLLELEREAQRWSEQAEerkqiLESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKE 594
Cdd:TIGR00618 669 VLPKELLASRQLALQKMQSE-----KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQ 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 595 LARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH 674
Cdd:TIGR00618 744 SLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQC 823
|
570
....*....|....*
gi 1676440542 675 EEVQGKMAAELARQE 689
Cdd:TIGR00618 824 ETLVQEEEQFLSRLE 838
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
187-789 |
1.07e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.57 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 187 TNKQLSSTIEELKQQNQ---DTLDQLEkekkdyqQKLAKEQGSLREQLQVH--IQTIGILVSEKAELQTALAHTQQAARQ 261
Cdd:PRK04863 436 TADNAEDWLEEFQAKEQeatEELLSLE-------QKLSVAQAAHSQFEQAYqlVRKIAGEVSRSEAWDVARELLRRLREQ 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 262 KAgesedLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVA 341
Cdd:PRK04863 509 RH-----LAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----------EDELEQLQEELEARLESLSE 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 342 EKAAAQLGVEELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAE 413
Cdd:PRK04863 573 SVSEARERRMALRQQLEQLQARIQRLAArapawlaaQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAA 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 414 N---LKGESAMWQQ-------RVQQMAEQVHTLKEEKEHRERQVQE---LETSLAALRSQMEEPPppeppagPSEAEEQL 480
Cdd:PRK04863 653 RkqaLDEEIERLSQpggsedpRLNALAERFGGVLLSEIYDDVSLEDapyFSALYGPARHAIVVPD-------LSDAAEQL 725
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 481 QGEvEQLHKELERLTG---QLR-----AQVQDNESLSHLNREQ-----------------EGRLLELEREAQRWSEQAEE 535
Cdd:PRK04863 726 AGL-EDCPEDLYLIEGdpdSFDdsvfsVEELEKAVVVKIADRQwrysrfpevplfgraarEKRIEQLRAEREELAERYAT 804
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 536 RKQILESMQSDRTTISRALSQN-------------RELKEQLAELQNGFVRLTNENMEITSALQSeqhvKKELARKLGEL 602
Cdd:PRK04863 805 LSFDVQKLQRLHQAFSRFIGSHlavafeadpeaelRQLNRRRVELERALADHESQEQQQRSQLEQ----AKEGLSALNRL 880
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 603 QERLGELKEtvELKSQEAQGLQEQRDQClshlqQYAAAY-QQHLAAYEQLtsEKEAIhkqlLLQTqlmDQLQHEEVQGkm 681
Cdd:PRK04863 881 LPRLNLLAD--ETLADRVEEIREQLDEA-----EEAKRFvQQHGNALAQL--EPIVS----VLQS---DPEQFEQLKQ-- 942
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 682 AAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaiPEDLDSREAMVAFFNAAIARAEE 761
Cdd:PRK04863 943 DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-----------------------AEMLAKNSDLNEKLRQRLEQAEQ 999
|
650 660
....*....|....*....|....*...
gi 1676440542 762 EQARLRVQLKEQKARCRSLSHLAAPVQS 789
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKS 1027
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
477-908 |
1.46e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 477 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALS- 555
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 556 -----QNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVElksQEAQGLQEQrdqc 630
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEE---- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 631 LSHLQQYAAAYQQHLaayEQLTSEKEAIHKQLllqtqlmdqlqhEEVQGKMAAELARQELQEAQERLKATS-------QE 703
Cdd:COG4717 201 LEELQQRLAELEEEL---EEAQEELEELEEEL------------EQLENELEAAALEERLKEARLLLLIAAallallgLG 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 704 NQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHL 783
Cdd:COG4717 266 GSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 784 AAPVQSKLEKEAVVPRNVDDSASEESNQAL----HVAMEKLQSRFLEVMQEKVELKERVEELEHcciQLSGETDTIGEYI 859
Cdd:COG4717 346 IEELQELLREAEELEEELQLEELEQEIAALlaeaGVEDEEELRAALEQAEEYQELKEELEELEE---QLEELLGELEELL 422
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1676440542 860 AlyQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNER 908
Cdd:COG4717 423 E--ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
246-493 |
1.53e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 48.87 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 246 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGElertlSTVSTQQKQADRYNK-DLTKERDALKLELYKNSKSNED 324
Cdd:pfam05667 254 EQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTT-----DTGLTKGSRFTHTEKlQFTNEAPAATSSPPTKVETEEE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 325 LRQQN----SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQssaaggNEQLQHAMEERAQLETHVSQLMES 400
Cdd:pfam05667 329 LQQQReeelEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQ------NEELEKQYKVKKKTLDLLPDAEEN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 401 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQL 480
Cdd:pfam05667 403 IAKLQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKE--ELYKQL 480
|
250
....*....|...
gi 1676440542 481 QGEVEQLHKELER 493
Cdd:pfam05667 481 VAEYERLPKDVSR 493
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-460 |
1.78e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 265 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQ-------ADRYNKDLTK----ERDALKLELYKNSKSNEDLRQQNSELE 333
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelAERYAAARERlaelEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 334 EKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQfssqssaAGGN------EQLQHAMEERAQLETHVSQLMESLKQLQVE 407
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRG-------NGGDrleqleREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1676440542 408 rdqyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 460
Cdd:COG4913 375 -------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
188-626 |
3.26e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 188 NKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQgSLREQLQVhiqtigiLVSEKAELQTALAHTQQAARQKAGESE 267
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-NTQTQLNQ-------LKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 268 DLASRLQSSRQRVGELErtlstvstQQKQADrYNKDLT-------KERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 340
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLN--------NQKEQD-WNKELKselknqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 341 AEKAAAQLGVEELQKKLEMSE-------LLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVErdqyAE 413
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKkenqsykQEIKNLESQINDL--ESKIQNQEKLNQQKDEQIKKLQQEKELLEKE----IE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 414 NLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppagpseaeEQLQGEVEQLHKELER 493
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL---------EQKQKELKSKEKELKK 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 494 LTGQLRaqvQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL--SQNRELKEQLAELQNGF 571
Cdd:TIGR04523 501 LNEEKK---ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQ 577
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1676440542 572 VRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 626
Cdd:TIGR04523 578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
394-842 |
3.99e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 394 VSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQV---HTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP 470
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 471 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERkqilesMQSDRTTI 550
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE------LQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 551 SRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKK--ELARKLGELQERLGELKETVELKSQEAQGLQEQRD 628
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 629 QCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQ 708
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 709 AQLSLlvlpgegdvdqeeedeevpqsslaipedlDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQ 788
Cdd:COG4717 362 ELQLE-----------------------------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1676440542 789 SKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 842
Cdd:COG4717 413 ELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
423-629 |
4.26e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 423 QQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQV 502
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL--EAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 503 QDNESLSHLNREQE----GRLLELEREAQRWSEQAEERKQILEsmqsdrttisralsqnrELKEQLAELQNGFVRLTNEN 578
Cdd:COG4942 111 RALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAE-----------------ELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1676440542 579 MEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 629
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
424-694 |
4.48e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 424 QRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP----AGPSEAEEQLQGEVEQLHKELERLTGQLR 499
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 500 AQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenm 579
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 580 eitsalqseqhvkKELARKLGELQERLGELKETVELkSQEAQGLQEQRDQCLSHLQQYAAayQQHLAAYEQLTSEKEAIH 659
Cdd:PRK03918 341 -------------EELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIE 404
|
250 260 270
....*....|....*....|....*....|....*
gi 1676440542 660 KQLLLQTQLMDQLQHEEVQGKMAAElarqELQEAQ 694
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIE----ELKKAK 435
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
274-527 |
6.21e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 274 QSSRQRVGELERTLSTVstqQKQADRYNKDLtkERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEEL 353
Cdd:COG3206 164 QNLELRREEARKALEFL---EEQLPELRKEL--EEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 354 QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLEThvsqlmeslkQLQVERDQYAENlkgesamwQQRVQQMAEQV 433
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA----------ELAELSARYTPN--------HPDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 434 HTLKEEKEHRERQV-QELETSLAALRSQmeeppppeppagpseaEEQLQGEVEQLHKELERLTgqlraqvqdneslshln 512
Cdd:COG3206 301 AALRAQLQQEAQRIlASLEAELEALQAR----------------EASLQAQLAQLEARLAELP----------------- 347
|
250
....*....|....*
gi 1676440542 513 rEQEGRLLELEREAQ 527
Cdd:COG3206 348 -ELEAELRRLEREVE 361
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
168-662 |
8.35e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 168 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKkDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 247
Cdd:pfam01576 71 QELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEE-AARQKLQLEKVTTEAKIKKLEEDILLLEDQNSK 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 248 LQ---TALAHTQQAARQKAGESEDLASRLQSSRQRvgeLERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNED 324
Cdd:pfam01576 150 LSkerKLLEERISEFTSNLAEEEEKAKSLSKLKNK---HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 325 LRQQNSELEEKLRVLVAEKAAAQLGVEElqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQL 404
Cdd:pfam01576 227 LQAQIAELRAQLAKKEEELQAALARLEE--ETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 405 QVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELE----TSLAALRSQMEEPPPPEppAGPSEAEEQL 480
Cdd:pfam01576 305 KTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRqkhtQALEELTEQLEQAKRNK--ANLEKAKQAL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 481 QGEVEQLHKELERLTGQlraqVQDNEslsHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL------ 554
Cdd:pfam01576 383 ESENAELQAELRTLQQA----KQDSE---HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegk 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 555 ------------SQNRELKEQLAE-------LQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 615
Cdd:pfam01576 456 niklskdvssleSQLQDTQELLQEetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEE 535
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1676440542 616 KSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQL 662
Cdd:pfam01576 536 DAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
189-569 |
1.15e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 189 KQLSSTIEELKQQ-NQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAARQKAG 264
Cdd:TIGR04523 291 NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlneQISQLKKELTNSESENSEKQRELEEKQN 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 265 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 344
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 345 AAQLGVEELQKKLEMSELLLQQFSSQSsaaggNEQLQHAMEERAQLETHVSQLmESLKQLQVERDQYAENLKGESAMWQQ 424
Cdd:TIGR04523 451 VKELIIKNLDNTRESLETQLKVLSRSI-----NKIKQNLEQKQKELKSKEKEL-KKLNEEKKELEEKVKDLTKKISSLKE 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 425 RVQQmaeqvhtLKEEKEHRERQVQELETSLAALRSQMEEppppeppagpseaeEQLQGEVEQLHKELERLTgqlraqvQD 504
Cdd:TIGR04523 525 KIEK-------LESEKKEKESKISDLEDELNKDDFELKK--------------ENLEKEIDEKNKEIEELK-------QT 576
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440542 505 NESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQN 569
Cdd:TIGR04523 577 QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE---LEKAKKENEKLSSIIKNIKS 638
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
265-878 |
1.23e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 265 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdlTKERDALKLELYKNSKSN-EDLRQQNSELEEKLRVLVAEK 343
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARE-----TRDEADEVLEEHEERREElETLEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 344 AAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQY---AENLKGESA 420
Cdd:PRK02224 275 EELAEEVRDLRERLE--ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHneeAESLREDAD 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 421 MWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRA 500
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 501 QVQDNESLShlNREQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNen 578
Cdd:PRK02224 431 LEATLRTAR--ERVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-- 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 579 meitsalqseqhvKKELARKLGELQERLgelKETVELKSQEAQGLQEQRDQClshlqqyaaayqqhlaayEQLTSEKeai 658
Cdd:PRK02224 504 -------------LVEAEDRIERLEERR---EDLEELIAERRETIEEKRERA------------------EELRERA--- 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 659 hkqlllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqlsllvlpgegdvdqeeedeevpqsslAI 738
Cdd:PRK02224 547 -----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-------------------------------EL 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 739 PEDLDSREAMVAFFnAAIARAEEEQARLRVQLKEQKARCR-SLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQA----- 812
Cdd:PRK02224 585 KERIESLERIRTLL-AAIADAEDEIERLREKREALAELNDeRRERLAEKRERKRELEAEFDEARIEEAREDKERAeeyle 663
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 813 --------LHVAMEKLQSRFLEV---MQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEE 878
Cdd:PRK02224 664 qveekldeLREERDDLQAEIGAVeneLEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
138-556 |
1.24e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 46.12 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 138 SLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQ 217
Cdd:COG4995 35 AAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALLA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 218 QKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 297
Cdd:COG4995 115 LAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAA 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 298 DRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN 377
Cdd:COG4995 195 AAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALA 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 378 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAL 457
Cdd:COG4995 275 AAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 458 RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERK 537
Cdd:COG4995 355 LAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLA 434
|
410
....*....|....*....
gi 1676440542 538 QILESMQSDRTTISRALSQ 556
Cdd:COG4995 435 LIEYIILPDRLYAFVQLYQ 453
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
196-414 |
1.46e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 196 EELKQQNQDTLDQLEKEKKDYQQKLAKEQ------------------------------GSLREQLQVHIQTIG-ILVSE 244
Cdd:PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDVQQtraiqyqqavqalerakqlcglpdltadnaEDWLEEFQAKEQEATeELLSL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 245 KAELQTALAHTQQ----------------------AARQKAGESED---LASRLQSSRQRVGELERTLSTVSTQQKQADR 299
Cdd:PRK04863 462 EQKLSVAQAAHSQfeqayqlvrkiagevsrseawdVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAE 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 300 YNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS--------QS 371
Cdd:PRK04863 542 FCKRLGKNLDD-----------EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapawlaaQD 610
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1676440542 372 SAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAEN 414
Cdd:PRK04863 611 ALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
246-567 |
1.69e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 246 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDL 325
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVA-----SAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 326 R---QQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLqhamEERAQLETHVSQLMESLK 402
Cdd:COG4913 688 AaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL----ELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 403 QLQVeRDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRerqVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQG 482
Cdd:COG4913 764 EREL-RENLEERIDALRARLNRAEEELERAMRAFNREWPAE---TADLDADLESLPEYLALLDRLEEDGLP-EYEERFKE 838
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 483 EV-EQLHKELERLTGQLRAQVQD--------NESLSHLnREQEGRLLELEREAQRwSEQAEERKQILESMQSDRTTISRA 553
Cdd:COG4913 839 LLnENSIEFVADLLSKLRRAIREikeridplNDSLKRI-PFGPGRYLRLEARPRP-DPEVREFRQELRAVTSGASLFDEE 916
|
330
....*....|....
gi 1676440542 554 LSQNRElkEQLAEL 567
Cdd:COG4913 917 LSEARF--AALKRL 928
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
261-703 |
1.80e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 261 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN----EDLR-------QQN 329
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQkaleEDLQiatkticQLT 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 330 SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERD 409
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 410 QYAENLKGESAMW--QQRVQQMAEQVHTLKEE----KEHRERQVQELETSLAALRSqmeeppppeppagpseAEEQLQGE 483
Cdd:pfam05483 409 ELKKILAEDEKLLdeKKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTAIKT----------------SEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 484 VEQLHKELErltgqlRAQVQDNESLSHLNReqegRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQ 563
Cdd:pfam05483 473 VEDLKTELE------KEKLKNIELTAHCDK----LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 564 LAELQNGFVRLTNENMEITSALQSEQHVKKELAR-----------KLGELQERLGELKETVELKSQEAQGLQEQRDQcls 632
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlkkekQMKILENKCNNLKKQIENKNKNIEELHQENKA--- 619
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676440542 633 hLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAElarQELQEAQERLKATSQE 703
Cdd:pfam05483 620 -LKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISE---EKLLEEVEKAKAIADE 686
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
166-512 |
2.31e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.12 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 166 NMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLdqlekEKKDYQQKLA------KEQGSLRE---QLQVHIQ 236
Cdd:pfam05557 147 KASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSE-----IVKNSKSELAripeleKELERLREhnkHLNENIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 237 TIGILVSEKAELQTALAHTQQAARQKAG---ESEDLASRLQSSR---QRVGELERTLSTVSTQQKQADRYNKDLTKErda 310
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREEKYREEAATlelEKEKLEQELQSWVklaQDTGLNLRSPEDLSRRIEQLQQREIVLKEE--- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 311 lklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELL---------------------LQQFSS 369
Cdd:pfam05557 299 -----------NSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALvrrlqrrvllltkerdgyraiLESYDK 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 370 QSSAAGGNEQLQHAMEERAQL----ETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQ--------MAEQVHTLK 437
Cdd:pfam05557 368 ELTMSNYSPQLLERIEEAEDMtqkmQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQesladpsySKEEVDSLR 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 438 EEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGP------------SEAEEQLQGEVEQLHKELERLTGQLRAQVQDN 505
Cdd:pfam05557 448 RKLETLELERQRLREQKNELEMELERRCLQGDYDPKktkvlhlsmnpaAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDL 527
|
....*..
gi 1676440542 506 ESLSHLN 512
Cdd:pfam05557 528 EQVLRLP 534
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
71-446 |
2.75e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.89 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 71 RSNGVSLPPlDKRKVPTDHIAPAPPTAATDTMFLGVTPSPDADLTQSHDAGNCSNLMEETKTFSSTESLRQLSQQLNGLV 150
Cdd:PLN02939 18 RSRAPFYLP-SRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 151 SESTSYINGEGLTSSNMKELENRYqelavalDSSYVTNKQLSSTIEELK--QQNQDTLDQLEKEKKDYQQKLAKEqgslR 228
Cdd:PLN02939 97 HNRASMQRDEAIAAIDNEQQTNSK-------DGEQLSDFQLEDLVGMIQnaEKNILLLNQARLQALEDLEKILTE----K 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 229 EQLQVHIQTIGILVSE-KAELQTAL---AHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQqkqadryNKDL 304
Cdd:PLN02939 166 EALQGKINILEMRLSEtDARIKLAAqekIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE-------NMLL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 305 TKERDALKLELYKNSKSNED---LRQQNSELEEKLRVLVAEKAAAQ--------LGVEELQKKLEMSELLLQQFSSQSSA 373
Cdd:PLN02939 239 KDDIQFLKAELIEVAETEERvfkLEKERSLLDASLRELESKFIVAQedvsklspLQYDCWWEKVENLQDLLDRATNQVEK 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 374 A----GGNEQLQHAME--ERAQLETHVSQ--------LMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEE 439
Cdd:PLN02939 319 AalvlDQNQDLRDKVDklEASLKEANVSKfssykvelLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398
|
....*..
gi 1676440542 440 KEHRERQ 446
Cdd:PLN02939 399 SKKRSLE 405
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
191-416 |
3.19e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 191 LSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHI-----QTIGILVSEKAELQTALAHTQQAARQKAGE 265
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 266 SEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE-KA 344
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLA-----ELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676440542 345 AAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHV-SQLMESLKQLQVERDQYAENLK 416
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELyESLLQRLEEARLAEALTVGNVR 389
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
175-460 |
3.74e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 175 QELAVALDSSyvtNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKL--AKEQGSLREQLQ---------VHIQTIGILVS 243
Cdd:COG3096 824 GHLAVAFAPD---PEAELAALRQRRSELERELAQHRAQEQQLRQQLdqLKEQLQLLNKLLpqanlladeTLADRLEELRE 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 244 EKAELQTALAHTQQAARQkAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnE 323
Cdd:COG3096 901 ELDAAQEAQAFIQQHGKA-LAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDA---V 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 324 DLRQQNSELEEKLR--VLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESl 401
Cdd:COG3096 977 GLLGENSDLNEKLRarLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEE- 1055
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1676440542 402 kQLQVERDQyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 460
Cdd:COG3096 1056 -RARIRRDE----LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQ 1109
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
128-401 |
4.34e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 128 EETKTFSSTESLRQLSQQL---NGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSSYVTNKQLsstiEELKQQNQD 204
Cdd:PRK10929 128 EQDRAREISDSLSQLPQQQteaRRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELEL----AQLSANNRQ 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 205 TLDQLEKE--KKDYQQKLAKEQGsLREQLQVHIQtigilvsEKAELqtALAHTQQAARQKAGESEDLASRLQSSRQRVGE 282
Cdd:PRK10929 204 ELARLRSElaKKRSQQLDAYLQA-LRNQLNSQRQ-------REAER--ALESTELLAEQSGDLPKSIVAQFKINRELSQA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 283 LE---RTLSTVSTQQKQADrynKDLTKERDALKlELYKNSK----SN---EDLRQQNSELEEKLRVLVAEKAAAQLGVee 352
Cdd:PRK10929 274 LNqqaQRMDLIASQQRQAA---SQTLQVRQALN-TLREQSQwlgvSNalgEALRAQVARLPEMPKPQQLDTEMAQLRV-- 347
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1676440542 353 lqKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE--RAQLETHvSQLMESL 401
Cdd:PRK10929 348 --QRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRilDAQLRTQ-RELLNSL 395
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
477-703 |
4.61e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 477 EEQLQGEVEQLHKELERLTGQL---RAQVqdneslshlnREQEGRLLELeREAQRWSEQAEERKQILESMQSDRTTISRA 553
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLpelRKEL----------EEAEAALEEF-RQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 554 LSQNRELKEQLAELQNgfvRLTNENMEITSALQSEqhVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 633
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676440542 634 LQQYAAAYQQHL-AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA---AELARQELQEAQERLKATSQE 703
Cdd:COG3206 307 LQQEAQRILASLeAELEALQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYESLLQRLEEARLA 380
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
184-675 |
4.85e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 184 SYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAAR 260
Cdd:TIGR04523 20 SYVGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNsnnKIKILEQQIKDLNDKLKKNKDKIN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 261 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLV 340
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 341 AEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGG-NEQLQHAMEERAQLETHVSQLMESLKQLQVE---RDQYAENLK 416
Cdd:TIGR04523 180 KEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlESQISELKKQNNQLKDNIEKKQQEINEKTTEisnTQTQLNQLK 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 417 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEeppppeppagpSEAEEQLQGEVEQLHKELERLTG 496
Cdd:TIGR04523 260 DEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE-----------QDWNKELKSELKNQEKKLEEIQN 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 497 QLRaqvQDNESLSHLNRE---QEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQNGFVR 573
Cdd:TIGR04523 329 QIS---QNNKIISQLNEQisqLKKELTNSESENSEKQRELEEKQNEIEKLKKE---NQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 574 LTNENMEITSALQSEQHVKKELARKLGELQERLGELKETV-ELKSQEAQG--LQEQRDQCLSHLQQYAAAYqqhLAAYEQ 650
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIkDLTNQDSVKelIIKNLDNTRESLETQLKVL---SRSINK 479
|
490 500
....*....|....*....|....*
gi 1676440542 651 LTSEKEAIHKQLLLQTQLMDQLQHE 675
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKKLNEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
371-567 |
6.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 371 SSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQEL 450
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 451 ETSLAALRSQMEEPPPPEPP--------------------AGPSEAE---EQLQGEVEQLHKELERLTGQLRAQVQDNES 507
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLDAVrrlQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 508 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAEL 567
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
177-403 |
6.76e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 177 LAVALDSSYVTNKQLSSTIEELKQQnqdtLDQLEKEkkdyQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQ 256
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQE----IAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 257 QAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK-----------QADR---YNKDLTKERDALKLELYKNSKSN 322
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalllspedflDAVRrlqYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 323 EDLRQQNSELEEKLRVLVAEKAAAQlgvEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 402
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAA 237
|
.
gi 1676440542 403 Q 403
Cdd:COG4942 238 A 238
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
196-434 |
6.82e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 196 EELKQQNQDTLDQLEKEKKDYQQKL------------------------------------------AKEQG------SL 227
Cdd:COG3096 381 EARLEAAEEEVDSLKSQLADYQQALdvqqtraiqyqqavqalekaralcglpdltpenaedylaafrAKEQQateevlEL 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 228 REQLQV-------HIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQA 297
Cdd:COG3096 461 EQKLSVadaarrqFEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLL 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 298 DRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS-------- 369
Cdd:COG3096 539 EEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAArapawlaa 607
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440542 370 QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENlkgesamwQQRVQQMAEQVH 434
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAAR--------KQALESQIERLS 664
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
287-608 |
6.99e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.41 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 287 LSTVSTQQKQADryNKDLTKERDALKLELYKNSKSNEDLRQQN-SELEEKLRVLVAEKAAAQLGVEELQKKLEMSElllQ 365
Cdd:COG5185 229 INIEEALKGFQD--PESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYT---K 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 366 QFSSQSSAAGGNEQLQhAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLkEEKEHRER 445
Cdd:COG5185 304 SIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTEN----LEAIKEEIENIVGE-VELSKSSE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 446 QVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELERE 525
Cdd:COG5185 378 ELDSFKDTIESTKESLDEIPQNQRGYAQ-EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMRE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 526 AQ--RWSEQAEERKQILESMQSDRTTISRALSQ-NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 602
Cdd:COG5185 457 ADeeSQSRLEEAYDEINRSVRSKKEDLNEELTQiESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYA 536
|
....*.
gi 1676440542 603 QERLGE 608
Cdd:COG5185 537 HILALE 542
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
474-687 |
7.62e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 474 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDN-------------ESLSHLNREQ---EGRLLELEREAQRWSEQAEERK 537
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlseeaklllQQLSELESQLaeaRAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 538 QILESMQSDrTTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARklgELQERLGELKETVELKS 617
Cdd:COG3206 254 DALPELLQS-PVIQQLRAQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQ 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 618 QEAQGLQEQRDQclshLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqTQLMDQLQHEEVQGKMAAELAR 687
Cdd:COG3206 327 AREASLQAQLAQ----LEARLAELPELEAELRRLEREVEVARELY---ESLLQRLEEARLAEALTVGNVR 389
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
196-899 |
8.03e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 8.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 196 EELKQQNQDTLDQLEKEKKDYQQK---LAKEQGSLREQLQVHIQtigiLVSEKAELQTALAHTQQAARQ-------KAGE 265
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQLQAETE----LCAEAEEMRARLAARKQELEEilhelesRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 266 SEDLASRLQSSR----QRVGELERTLstvstQQKQADRYNKDLTK----------ERDALKLELYKNSKSNE-------- 323
Cdd:pfam01576 87 EEERSQQLQNEKkkmqQHIQDLEEQL-----DEEEAARQKLQLEKvtteakikklEEDILLLEDQNSKLSKErklleeri 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 324 -DLRQQNSELEEKLRVLVAEKAAAQLGVEELQ---KKLEMSELLLQQFSSQSSAAGGNEQLQHAmEERAQLETHVSQLME 399
Cdd:pfam01576 162 sEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEerlKKEEKGRQELEKAKRKLEGESTDLQEQIA-ELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 400 SLKQLQVERDQYAENLKGESAMwQQRVQQMAEQVHTLKEEKEHR-------ERQVQELETSLAALRSQMeePPPPEPPAG 472
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNA-LKKIRELEAQISELQEDLESEraarnkaEKQRRDLGEELEALKTEL--EDTLDTTAA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 473 PSEAEEQLQGEVEQLHKELERLTGQLRAQVQDnesLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISR 552
Cdd:pfam01576 318 QQELRSKREQEVTELKKALEEETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 553 ALSQNRELKEQLAELQNGFVRltnenmEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLS 632
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQ------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 633 HLQQYAAAYQQHLAAYEQLTSEKEAIHKQlllQTQLMDQLQhEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqls 712
Cdd:pfam01576 469 QLQDTQELLQEETRQKLNLSTRLRQLEDE---RNSLQEQLE-EEEEAKRNVERQLSTLQAQLSDMKKKLEEDA------- 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 713 llvlpgEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHlaapVQSKLE 792
Cdd:pfam01576 538 ------GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEK----KQKKFD 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 793 KEAVVPRNVDDSASEESNQALHVAMEKlQSRFLEVMQEKVELKERVEELEHCCIQLSGETDtigeyiALYQNQRAVLKAR 872
Cdd:pfam01576 608 QMLAEEKAISARYAEERDRAEAEAREK-ETRALSLARALEEALEAKEELERTNKQLRAEME------DLVSSKDDVGKNV 680
|
730 740
....*....|....*....|....*..
gi 1676440542 873 HlEKEEYISRLAQDKEEMKVKLLELQE 899
Cdd:pfam01576 681 H-ELERSKRALEQQVEEMKTQLEELED 706
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
311-672 |
8.34e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 311 LKLELyKNSKSNEDLRQQNS--ELEEKLRVLVAEKAAAQlGVEELQKKLE----MSELLLQQFSSQSSAAGGNEQLQHAM 384
Cdd:PRK10929 28 ITQEL-EQAKAAKTPAQAEIveALQSALNWLEERKGSLE-RAKQYQQVIDnfpkLSAELRQQLNNERDEPRSVPPNMSTD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 385 EERAQLETHVSQLMESLKQLQVERDqyaenlkgesamwqqRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP 464
Cdd:PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQD---------------RAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 465 PPPEPPAGPSEAE------EQLqgEVEQL----HKELERLTG--------QLRAQVQDNESLSHLNREQEGRlLELEREA 526
Cdd:PRK10929 171 AQAQLTALQAESAalkalvDEL--ELAQLsannRQELARLRSelakkrsqQLDAYLQALRNQLNSQRQREAE-RALESTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 527 QRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQS--EQHVKKELARKLGE-LQ 603
Cdd:PRK10929 248 LLAEQSGDLPKSIVAQFKINR-ELSQALNQQAQRMDLIASQQR---QAASQTLQVRQALNTlrEQSQWLGVSNALGEaLR 323
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676440542 604 ---ERLGELKETVELKSQEAQgLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAI-HKQLLLQTQLMDQL 672
Cdd:PRK10929 324 aqvARLPEMPKPQQLDTEMAQ-LRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRIlDAQLRTQRELLNSL 395
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
168-356 |
1.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 168 KELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQlEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE 247
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ-IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 248 LQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNK-------------DLTKERDALKLE 314
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGedeeipeeelsleDVQAELQRVEEE 966
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1676440542 315 LYKNSKSN-------EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKK 356
Cdd:TIGR02169 967 IRALEPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
526-703 |
1.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 526 AQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQER 605
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 606 LGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAEL 685
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170
....*....|....*...
gi 1676440542 686 ARQELQEAQERLKATSQE 703
Cdd:COG4942 179 LLAELEEERAALEALKAE 196
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
478-794 |
1.34e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 478 EQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlNREQEGRLLELEREAQRWseqaeERKQILESMQSDRTTISRALSQN 557
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 558 RELKEQLAELQngfVRLTNENMEITSALQSEQHVKKELARKLGELQERLGElkETVELKSQEAQgLQEQRDQCLSHLQQY 637
Cdd:TIGR02169 247 ASLEEELEKLT---EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE--KIGELEAEIAS-LERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 638 AAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLP 717
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 718 GEGDVDQEEEDEevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKE 794
Cdd:TIGR02169 401 INELKRELDRLQ----------EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
195-695 |
1.40e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 195 IEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREqlqvHIQTIGILVSEKAELQTALAHtqQAARQ---KAGESEDLAS 271
Cdd:COG3096 439 AEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQ----FEKAYELVCKIAGEVERSQAW--QTAREllrRYRSQQALAQ 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 272 RLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAAAQLGVE 351
Cdd:COG3096 513 RLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 352 ELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQyaenlkgesamwq 423
Cdd:COG3096 582 ELRQQLEQLRARIKELAArapawlaaQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDE------------- 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 424 qrvqqmaeqvhtLKEEKEHRERQVQELetslaalrsqmeeppppepPAGPSEAEEQLQGEVEQLHKEL------------ 491
Cdd:COG3096 649 ------------LAARKQALESQIERL-------------------SQPGGAEDPRLLALAERLGGVLlseiyddvtled 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 492 ----ERLTGQLR-AQVQDNESL--SHLNREQE--GRLLELEREAQRWSE---QAEERKQILESMQSDRT----------T 549
Cdd:COG3096 698 apyfSALYGPARhAIVVPDLSAvkEQLAGLEDcpEDLYLIEGDPDSFDDsvfDAEELEDAVVVKLSDRQwrysrfpevpL 777
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 550 ISRALSQNR--ELKEQLAELQNGFVRLTNENMEITSALQS-EQHVKKELARKLGELQErlgelketvelksQEAQGLQEQ 626
Cdd:COG3096 778 FGRAAREKRleELRAERDELAEQYAKASFDVQKLQRLHQAfSQFVGGHLAVAFAPDPE-------------AELAALRQR 844
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1676440542 627 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKqLLLQTQLMDQLQHEEvqgkmAAELARQELQEAQE 695
Cdd:COG3096 845 RSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK-LLPQANLLADETLAD-----RLEELREELDAAQE 907
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
423-647 |
1.45e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 423 QQRVQQMAEQVHTLKEEKEHRER------QVQELETSLAALRSQMEEPPPPEPPagpsEAEEQLQGEVEQLHKELERLTG 496
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERyaaareRLAELEYLRAALRLWFAQRRLELLE----AELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 497 QLRAQVQDNESLSHLNREQEGRLLE-LEREAQRWSEQAEERKQilesmqsdrttisralsqnrelkeQLAELQNGFVRLT 575
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERER------------------------RRARLEALLAALG 372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440542 576 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAA 647
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
273-537 |
1.46e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 273 LQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAL-KLELYKNSKSNEDLRQQNSELEEKL-RVLVAEKAAAQLGV 350
Cdd:PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALnRLLPRLNLLADETLADRVEEIREQLdEAEEAKRFVQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 351 -------------------EELQKKLEMSELLLQQFSSQSSA---------AGGNEQLQHAMEERAQLethVSQLMESLK 402
Cdd:PRK04863 919 alaqlepivsvlqsdpeqfEQLKQDYQQAQQTQRDAKQQAFAltevvqrraHFSYEDAAEMLAKNSDL---NEKLRQRLE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 403 QLQVERDQYAENLKGEsamwQQRVQQmAEQVHT-LKEEKEHRERQVQELETSLAALRSQmeeppppeppaGPSEAEEQLQ 481
Cdd:PRK04863 996 QAEQERTRAREQLRQA----QAQLAQ-YNQVLAsLKSSYDAKRQMLQELKQELQDLGVP-----------ADSGAEERAR 1059
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 482 GEVEQLHKELeRLTGQLRAQVQDNESLSHLN-REQEGRLLELEREAQRWSEQAEERK 537
Cdd:PRK04863 1060 ARRDELHARL-SANRSRRNQLEKQLTFCEAEmDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
188-703 |
1.70e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 188 NKQLSSTIEELKQQNQDTLDQLEKeKKDYQQKLAKeqgsLREQLQvhiqtigilvsekaelqtalahtqqaarqkagese 267
Cdd:PRK11281 51 QKLLEAEDKLVQQDLEQTLALLDK-IDRQKEETEQ----LKQQLA----------------------------------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 268 dlasrlqssrqrvgelertlstvstqqkQADRYNKDLTKERDALKlelyknSKSNEDLRQQNSeleeklrvlvaekaaaQ 347
Cdd:PRK11281 91 ----------------------------QAPAKLRQAQAELEALK------DDNDEETRETLS----------------T 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 348 LGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMESlkqlqverdqyaenlkgesamwQQR 425
Cdd:PRK11281 121 LSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN----------------------SQR 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 426 VQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQD 504
Cdd:PRK11281 172 LQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQLQDLLQKQRDYLTARIQRLEHQLQL 245
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 505 NESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRELKEQLAELQNGFVRLTNENMEIT-- 582
Cdd:PRK11281 246 LQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnw 314
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 583 --SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ------GLQEQRDQcLSHLQQYAAAYQQHl 645
Cdd:PRK11281 315 ldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleqfEINQQRDA-LFQPDAYIDKLEAG- 392
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440542 646 aayeQLTSEKEAIHKQL--LLQT--QLMDQLQHEEVQGKMAA---ELARQELQEAQERLKATSQE 703
Cdd:PRK11281 393 ----HKSEVTDEVRDALlqLLDErrELLDQLNKQLNNQLNLAinlQLNQQQLLSVSDSLQSTLTQ 453
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
164-386 |
2.23e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 164 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDyQQKLAKEQGSLREQLQVHIQTIGILVS 243
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALLN 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 244 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAD---RYNKDLTKERDALKLELYKNSK 320
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvriDNLQERLSEEYSLTLEEAEALE 960
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440542 321 SNEDLRQQnsELEEKLRVLvaEKAAAQLG------VEELQKKLEMSELLLQQFSSQSSAAggnEQLQHAMEE 386
Cdd:TIGR02168 961 NKIEDDEE--EARRRLKRL--ENKIKELGpvnlaaIEEYEELKERYDFLTAQKEDLTEAK---ETLEEAIEE 1025
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
132-346 |
3.19e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 132 TFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELENRYQELAVALDSsyvTNKQLSSTIEELKQQNQDtLDQLEK 211
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA---LARRIRALEQELAALEAE-LAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 212 EKKDYQQKLAKEQGSLREQLQ--------------VHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSR 277
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRalyrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1676440542 278 QRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAA 346
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
207-566 |
3.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 207 DQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERT 286
Cdd:pfam10174 358 ESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTA 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 287 LSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQK----------- 355
Cdd:pfam10174 438 LTTLEEALSEKERIIERLKEQREREDRERLEEL---ESLKKENKDLKEKVSALQPELTEKESSLIDLKEhasslassglk 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 356 ---KLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSqlmESLKQLQVERDQYAEnlkgESAMWQQRVQQMAEQ 432
Cdd:pfam10174 515 kdsKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIN---DRIRLLEQEVARYKE----ESGKAQAEVERLLGI 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 433 VHTLKEEKEHRERQVQELEtSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKElerltgqlraqvQDNESLSHLN 512
Cdd:pfam10174 588 LREVENEKNDKDKKIAELE-SLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR------------EDNLADNSQQ 654
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1676440542 513 REQEGRLLELEREAQrwseQAEERKQILESMQSDRTTISRALSQNR-ELKEQLAE 566
Cdd:pfam10174 655 LQLEELMGALEKTRQ----ELDATKARLSSTQQSLAEKDGHLTNLRaERRKQLEE 705
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
175-638 |
3.85e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 41.28 E-value: 3.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 175 QELAVALDSSYVTNKQLSSTIEELKQQnqdtLDQLEKEKKDYQQKLAKEQGSLREQLQVH--IQTIGILVSEKAELQTAL 252
Cdd:pfam07111 190 KQLAEAQKEAELLRKQLSKTQEELEAQ----VTLVESLRKYVGEQVPPEVHSQTWELERQelLDTMQHLQEDRADLQATV 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 253 ----AHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVstqqkqADRYNKDLTKERDALKLELYKNSKSNEDLRQQ 328
Cdd:pfam07111 266 ellqVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSL------LNRWREKVFALMVQLKAQDLEHRDSVKQLRGQ 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 329 NSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELllqqfssqsSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVER 408
Cdd:pfam07111 340 VAELQEQVTSQSQEQAILQRALQDKAAEVEVERM---------SAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAM 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 409 DQYAENLKGESAMWQQRVQQMAEQVHTLKE--EKEHRERQVQELETSLAALRSQMEEPPppePPAGPSEAEEQLqgEVEQ 486
Cdd:pfam07111 411 SSTQIWLETTMTRVEQAVARIPSLSNRLSYavRKVHTIKGLMARKVALAQLRQESCPPP---PPAPPVDADLSL--ELEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 487 LHKELERLTGQLRAQvqdneslSHLNREQEGRLLEL-EREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE-LKEQL 564
Cdd:pfam07111 486 LREERNRLDAELQLS-------AHLIQQEVGRAREQgEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQgQQEST 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 565 AELQNGFVRLTNENMEITSALQSE-QHVKKELARKLGELQERLGE-----LKETVELKSQEAQGLQE-QRDQCLSHLQQY 637
Cdd:pfam07111 559 EEAASLRQELTQQQEIYGQALQEKvAEVETRLREQLSDTKRRLNEarreqAKAVVSLRQIQHRATQEkERNQELRRLQDE 638
|
.
gi 1676440542 638 A 638
Cdd:pfam07111 639 A 639
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
227-672 |
4.29e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 41.11 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 227 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 306
Cdd:COG4995 8 ALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 307 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE 386
Cdd:COG4995 88 ALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 387 RAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPP 466
Cdd:COG4995 168 LALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 467 PEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSD 546
Cdd:COG4995 248 AALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 547 RTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 626
Cdd:COG4995 328 AALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQ 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1676440542 627 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH--KQLLLQTQLMDQL 672
Cdd:COG4995 408 LLRLLLAALALLLALAAYAAARLALLALIEYIIlpDRLYAFVQLYQLL 455
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
164-636 |
5.26e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 164 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVS 243
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALED 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 244 -----EKAELQTALAHTQQA---ARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQK-QADRYNKDLTKERDALKLE 314
Cdd:pfam12128 330 qhgafLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNrDIAGIKDKLAKIREARDRQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 315 LyknSKSNEDLRQQNSELEEKLrvlvaEKAAAQLGVEELQKKLEMSELLLQQFSSQSSA------AGGNEQLQHAMEERA 388
Cdd:pfam12128 410 L---AVAEDDLQALESELREQL-----EAGKLEFNEEEYRLKSRLGELKLRLNQATATPelllqlENFDERIERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 389 QLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEK----EHRERQVQELETSLAAL------- 457
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAgtllHFLRKEAPDWEQSIGKVispellh 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 458 RSQMEEPPPPEPPAG----------------PSEA--EEQLQGEVEQLHKELErlTGQLRAQVQDnESLSHLNREQEGRL 519
Cdd:pfam12128 562 RTDLDPEVWDGSVGGelnlygvkldlkridvPEWAasEEELRERLDKAEEALQ--SAREKQAAAE-EQLVQANGELEKAS 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 520 LELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQlaELQNGFVRLTNENMEITSALQSEQHVKKEL-ARK 598
Cdd:pfam12128 639 REETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANE--RLNSLEAQLKQLDKKHQAWLEEQKEQKREArTEK 716
|
490 500 510
....*....|....*....|....*....|....*...
gi 1676440542 599 LGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQ 636
Cdd:pfam12128 717 QAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET 754
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
304-460 |
5.32e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 304 LTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHA 383
Cdd:COG1579 22 LEHRLKELPAEL-------AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440542 384 MEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEkehRERQVQELETSLAALRSQ 460
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAEL----EAELAELEAELEEKKAE---LDEELAELEAELEELEAE 164
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
209-625 |
5.33e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 209 LEKEKKDYQQKLAKEQGSLrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQrvgeLERTLS 288
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEM-EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ----LEDWLH 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 289 TVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLrVLVAEKAAAQLGVEELQKKLEMSELLLQQFS 368
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEIEKSSKQRAMLA 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 369 SQSS------------AAGGNEQLQHAMEERAQLETHVSQL----------MESLKQLQVERDQYAENLKGESAMWQQRV 426
Cdd:TIGR00606 660 GATAvysqfitqltdeNQSCCPVCQRVFQTEAELQEFISDLqsklrlapdkLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 427 QQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDne 506
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG-- 817
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 507 slshlnreqegrlLELEREAQRWSEQAEERKQILESMQSdRTTISRALSQNRElkEQLAELQNGFVRLTNENMEITSALQ 586
Cdd:TIGR00606 818 -------------SDLDRTVQQVNQEKQEKQHELDTVVS-KIELNRKLIQDQQ--EQIQHLKSKTNELKSEKLQIGTNLQ 881
|
410 420 430
....*....|....*....|....*....|....*....
gi 1676440542 587 SEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 625
Cdd:TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
524-703 |
5.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 524 REAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQngfvrltnenmeitsalqseqhvKKELARKLGELQ 603
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALR-----------------------LWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 604 ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQH-LAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA 682
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180
....*....|....*....|.
gi 1676440542 683 AELARQELQEAQERLKATSQE 703
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEA 395
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
164-576 |
8.31e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 164 SSNMKELENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYqqKLAKEQGSLREQLQVHIQTIGILVS 243
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH--ELYEEAKAKKEELERLKKRLTGLTP 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 244 EKAELQTALAHTQQAARQKagESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKnsKSNE 323
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEE--EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYT--AELK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 324 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGN-EQLQHAMEERAQLETHVSQLMESLK 402
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 403 QLQVERDQYAEnLKGESAMWQQRVQQMAEQVHTLKEEKEHR--------ERQVQELETS----LAALRSQMEEPPPPEPP 470
Cdd:PRK03918 543 SLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEELgfesveelEERLKELEPFyneyLELKDAEKELEREEKEL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 471 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlnREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTI 550
Cdd:PRK03918 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY--EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
410 420
....*....|....*....|....*.
gi 1676440542 551 SRALSQNRELKEQLAELQNGFVRLTN 576
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEE 725
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
386-629 |
9.34e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 39.72 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 386 ERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPP 465
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 466 PPEPPAGPSEAE-EQLQGEVEQLHKELERLTGQLRAQVQDNES-LSHLNREQEGRLLELEREAQRWSEqAEERKQILESM 543
Cdd:pfam05557 83 KYLEALNKKLNEkESQLADAREVISCLKNELSELRRQIQRAELeLQSTNSELEELQERLDLLKAKASE-AEQLRQNLEKQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440542 544 QSDRTTisralsQNRELKEQLAELQngfvrLTNENMEITSALQSEQHVKKELARKLGELQE---RLGELKETVELKSQEA 620
Cdd:pfam05557 162 QSSLAE------AEQRIKELEFEIQ-----SQEQDSEIVKNSKSELARIPELEKELERLREhnkHLNENIENKLLLKEEV 230
|
....*....
gi 1676440542 621 QGLQEQRDQ 629
Cdd:pfam05557 231 EDLKRKLER 239
|
|
| |
