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Conserved domains on  [gi|227430340|ref|NP_608301|]
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kinesin-like protein KIF2C isoform 1 [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
254-582 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 597.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 333
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 334 EGGKATCFAYGQTGSGKTHTMGGDLSGksQNASKGIYAMASRDVFLLKNQPRYRNlNLEVYVTFFEIYNGKVFDLLNKKA 413
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYKD-NLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 414 KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--RLHGKFSLVDLAG 491
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 492 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYT 571
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 227430340 572 LNTLRYADRVK 582
Cdd:cd01367  318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
254-582 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 597.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 333
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 334 EGGKATCFAYGQTGSGKTHTMGGDLSGksQNASKGIYAMASRDVFLLKNQPRYRNlNLEVYVTFFEIYNGKVFDLLNKKA 413
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYKD-NLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 414 KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--RLHGKFSLVDLAG 491
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 492 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYT 571
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 227430340 572 LNTLRYADRVK 582
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
260-583 1.92e-133

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 396.94  E-value: 1.92e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  260 RKRPLNKQELAKKEIDVISVPSkcllLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 339
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVES----VDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  340 CFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRNlNLEVYVTFFEIYNGKVFDLL----NKKAKL 415
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQKTKERS-EFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  416 RVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------LHGKFSLV 487
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  488 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIAMISPGIS 566
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 227430340  567 SCEYTLNTLRYADRVKE 583
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
254-584 3.65e-118

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 358.04  E-value: 3.65e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   254 RICVCVRKRPLNKQELAKKEIDVISVPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 330
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   331 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYrNLNLEVYVTFFEIYNGKVFDLLN 410
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFEKIDKREE-GWQFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   411 K-KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR-------LHG 482
Cdd:smart00129 147 PsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   483 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIAM 560
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....
gi 227430340   561 ISPGISSCEYTLNTLRYADRVKEL 584
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEI 328
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
294-634 3.16e-60

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 212.68  E-value: 3.16e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 294 VDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSgksqnaSKGIYAMA 373
Cdd:COG5059   48 VSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLS 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 374 SRDVFlLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL-NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACR 452
Cdd:COG5059  121 LKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNR 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 453 TSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFSLVDLAGNERGADTssADRQTRM-EGAEINKSLLALKECIRAL 526
Cdd:COG5059  200 TTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVDLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINAL 277
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 527 GQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHsgPSGEQPVQMETEVME 604
Cdd:COG5059  278 GDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNK--IQVNSSSDSSREIEE 354
                        330       340       350
                 ....*....|....*....|....*....|.
gi 227430340 605 ASSNGTSLT-GNEEEELSSQMSSFNEAMTQI 634
Cdd:COG5059  355 IKFDLSEDRsEIEILVFREQSQLSQSSLSGI 385
PLN03188 PLN03188
kinesin-12 family protein; Provisional
257-582 2.07e-35

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 144.69  E-value: 2.07e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  257 VCVRKRPLNKQELAKKEIDVISVPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 336
Cdd:PLN03188  102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  337 KATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVF------LLKNQPRY--RNLNLEVYVTFFEIYNGKVFDL 408
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFerlfarINEEQIKHadRQLKYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  409 LNKKAK-LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL--RTKGRLHG--- 482
Cdd:PLN03188  246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  483 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 553
Cdd:PLN03188  326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                         330       340
                  ....*....|....*....|....*....
gi 227430340  554 RTCMIAMISPGISSCEYTLNTLRYADRVK 582
Cdd:PLN03188  404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
254-582 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 597.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 333
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 334 EGGKATCFAYGQTGSGKTHTMGGDLSGksQNASKGIYAMASRDVFLLKNQPRYRNlNLEVYVTFFEIYNGKVFDLLNKKA 413
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYKD-NLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 414 KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG--RLHGKFSLVDLAG 491
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 492 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYT 571
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 227430340 572 LNTLRYADRVK 582
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
260-583 1.92e-133

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 396.94  E-value: 1.92e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  260 RKRPLNKQELAKKEIDVISVPSkcllLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 339
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVES----VDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  340 CFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRNlNLEVYVTFFEIYNGKVFDLL----NKKAKL 415
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQKTKERS-EFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  416 RVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------LHGKFSLV 487
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  488 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIAMISPGIS 566
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 227430340  567 SCEYTLNTLRYADRVKE 583
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
254-582 4.74e-121

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 365.04  E-value: 4.74e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQElAKKEIDVISVPSKCLLLVHEPKlkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 333
Cdd:cd00106    1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPK-----NRVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 334 EGGKATCFAYGQTGSGKTHTMGGDLSGksqnaSKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN--K 411
Cdd:cd00106   75 EGYNGTIFAYGQTGSGKTYTMLGPDPE-----QRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 412 KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRL-------HGKF 484
Cdd:cd00106  150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 485 SLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIAMISP 563
Cdd:cd00106  230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQNkHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                        330
                 ....*....|....*....
gi 227430340 564 GISSCEYTLNTLRYADRVK 582
Cdd:cd00106  308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
254-584 3.65e-118

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 358.04  E-value: 3.65e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   254 RICVCVRKRPLNKQELAKKEIDVISVPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 330
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   331 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYrNLNLEVYVTFFEIYNGKVFDLLN 410
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFEKIDKREE-GWQFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   411 K-KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR-------LHG 482
Cdd:smart00129 147 PsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340   483 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIAM 560
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....
gi 227430340   561 ISPGISSCEYTLNTLRYADRVKEL 584
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEI 328
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
254-584 1.35e-87

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 278.84  E-value: 1.35e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQELAKKEIDVISVPSKcLLLVHEPKLKVDLTKYLEN------------QAFCFDFAFDETASNEVVY 321
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDN-HMLVFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 322 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGksqnasKGIYAMASRDVF----LLKNQPRYrnlnlEVYVTF 397
Cdd:cd01370   80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQE------PGLMVLTMKELFkrieSLKDEKEF-----EVSMSY 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 398 FEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT 476
Cdd:cd01370  149 LEIYNETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQ 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 477 KGRLH--------GKFSLVDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNK---AHTPFRESKLTQVL 544
Cdd:cd01370  229 QDKTAsinqqvrqGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALADPGkknKHIPYRDSKLTRLL 306
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 227430340 545 RDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 584
Cdd:cd01370  307 KDS-LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
254-582 1.20e-77

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 253.43  E-value: 1.20e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKL-KVDLTKYLENQAFCFDFAF------DET-ASNEVVYRFTA 325
Cdd:cd01365    2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYwshdseDPNyASQEQVYEDLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 326 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKV 405
Cdd:cd01365   82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKV 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 406 FDLLNKKAK-----LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR----- 475
Cdd:cd01365  156 RDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTqkrhd 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 476 -TKGRLHGKFS---LVDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT--------PFRESKLTQV 543
Cdd:cd01365  236 aETNLTTEKVSkisLVDLAGSER-ASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssfiPYRDSVLTWL 314
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 227430340 544 LRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 582
Cdd:cd01365  315 LKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
257-580 9.68e-77

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 250.33  E-value: 9.68e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 257 VCVRKRPLNKQELAKKEIDVISVPSKclllvhEPKLKVDltkylENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 336
Cdd:cd01372    5 VAVRVRPLLPKEIIEGCRICVSFVPG------EPQVTVG-----TDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 337 KATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVF----LLKNQPRYrnlnlEVYVTFFEIYNGKVFDLLN-- 410
Cdd:cd01372   74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkkieKKKDTFEF-----QLKVSFLEIYNEEIRDLLDpe 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 411 --KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------- 479
Cdd:cd01372  149 tdKKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsa 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 480 ------LHGKFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALG---QNKAHTPFRESKLTQVLRDSfIG 550
Cdd:cd01372  229 ddknstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LG 306
                        330       340       350
                 ....*....|....*....|....*....|
gi 227430340 551 ENSRTCMIAMISPGISSCEYTLNTLRYADR 580
Cdd:cd01372  307 GNSHTLMIACVSPADSNFEETLNTLKYANR 336
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
255-584 1.32e-76

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 249.17  E-value: 1.32e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 255 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 334
Cdd:cd01374    2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPP-----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 335 GGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFllknQPRYRNLNLE--VYVTFFEIYNGKVFDLLN-K 411
Cdd:cd01374   71 GYNGTIFAYGQTSSGKTFTMSGD------EDEPGIIPLAIRDIF----SKIQDTPDREflLRVSYLEIYNEKINDLLSpT 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 412 KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLH--------GK 483
Cdd:cd01374  141 SQNLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEleegtvrvST 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 484 FSLVDLAGNERGADT-SSADRqtRMEGAEINKSLLALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIAM 560
Cdd:cd01374  221 LNLIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGG-NSRTAIICT 297
                        330       340
                 ....*....|....*....|....
gi 227430340 561 ISPGISSCEYTLNTLRYADRVKEL 584
Cdd:cd01374  298 ITPAESHVEETLNTLKFASRAKKI 321
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
255-582 8.90e-71

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 234.03  E-value: 8.90e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 255 ICVCVRKRPLNKQELAKkEIDVISVPSkclllvhEPKLKVDLT-KYLENQAFCFDFAFDETASNEVVYRfTARPLVQTIF 333
Cdd:cd01366    4 IRVFCRVRPLLPSEENE-DTSHITFPD-------EDGQTIELTsIGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 334 EGGKATCFAYGQTGSGKTHTMGGDLSgksqnaSKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA 413
Cdd:cd01366   75 DGYNVCIFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGN 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 414 ----KLRVLEDSRQ-QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-----TKGRLHGK 483
Cdd:cd01366  149 apqkKLEIRHDSEKgDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISgrnlqTGEISVGK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 484 FSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIAMISP 563
Cdd:cd01366  229 LNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNISP 306
                        330
                 ....*....|....*....
gi 227430340 564 GISSCEYTLNTLRYADRVK 582
Cdd:cd01366  307 AESNLNETLNSLRFASKVN 325
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
257-582 2.17e-70

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 233.12  E-value: 2.17e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 257 VCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKV-DLTKylenqAFCFDFAFDETASNEVVYRFTARPLVQTIFE 334
Cdd:cd01371    5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKATAnEPPK-----TFTFDAVFDPNSKQLDVYDETARPLVDSVLE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 335 GGKATCFAYGQTGSGKTHTMGGDlsgKSQNASKGIYAMASRDVFLLKNQPRyRNLNLEVYVTFFEIYNGKVFDLLNK--K 412
Cdd:cd01371   80 GYNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHIARSQ-NNQQFLVRVSYLEIYNEEIRDLLGKdqT 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 413 AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-----TKGRLH---GKF 484
Cdd:cd01371  156 KRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIEcsekgEDGENHirvGKL 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 485 SLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSfIGENSRTCMIAMISP 563
Cdd:cd01371  236 NLVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKStHIPYRDSKLTRLLQDS-LGGNSKTVMCANIGP 313
                        330
                 ....*....|....*....
gi 227430340 564 GISSCEYTLNTLRYADRVK 582
Cdd:cd01371  314 ADYNYDETLSTLRYANRAK 332
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
255-582 1.70e-68

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 227.98  E-value: 1.70e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 255 ICVCVRKRPLNKQELAKKEIDVISVPskclllvhePKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 334
Cdd:cd01369    4 IKVVCRFRPLNELEVLQGSKSIVKFD---------PEDTVVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 335 GGKATCFAYGQTGSGKTHTMGGdlsGKSQNASKGIYAMASRDVF--LLKNQpryRNLNLEVYVTFFEIYNGKVFDLLN-K 411
Cdd:cd01369   75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFetIYSMD---ENLEFHVKVSYFEIYMEKIRDLLDvS 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 412 KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR-----TKGRLHGKFSL 486
Cdd:cd01369  149 KTNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKqenveTEKKKSGKLYL 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 487 VDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGI 565
Cdd:cd01369  229 VDLAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTDgKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSS 306
                        330
                 ....*....|....*..
gi 227430340 566 SSCEYTLNTLRYADRVK 582
Cdd:cd01369  307 YNESETLSTLRFGQRAK 323
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
252-582 3.40e-67

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 225.28  E-value: 3.40e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 252 EHRICVCVRKRPLNKQELAKKEIDVISV--PSKCLLLVHEPKLKVDLTKylenqAFCFDFAFDETASNEVVYRFTARPLV 329
Cdd:cd01364    1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 330 QTIFEGGKATCFAYGQTGSGKTHTMGGDLS-----GKSQNASKGIYAMASRDVF--LLKNQPRYrnlnlEVYVTFFEIYN 402
Cdd:cd01364   76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSpneeyTWELDPLAGIIPRTLHQLFekLEDNGTEY-----SVKVSYLEIYN 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 403 GKVFDLL----NKKAKLRVLEDSRQQ--VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT 476
Cdd:cd01364  151 EELFDLLspssDVSERLRMFDDPRNKrgVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIHI 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 477 KGRLH--------GKFSLVDLAGNErGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSf 548
Cdd:cd01364  231 KETTIdgeelvkiGKLNLVDLAGSE-NIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDS- 308
                        330       340       350
                 ....*....|....*....|....*....|....
gi 227430340 549 IGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 582
Cdd:cd01364  309 LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
294-634 3.16e-60

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 212.68  E-value: 3.16e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 294 VDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSgksqnaSKGIYAMA 373
Cdd:COG5059   48 VSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLS 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 374 SRDVFlLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL-NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACR 452
Cdd:COG5059  121 LKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNR 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 453 TSGQTFANSNSSRSHACFQILLRTKGRLHG-----KFSLVDLAGNERGADTssADRQTRM-EGAEINKSLLALKECIRAL 526
Cdd:COG5059  200 TTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVDLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINAL 277
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 527 GQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHsgPSGEQPVQMETEVME 604
Cdd:COG5059  278 GDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNK--IQVNSSSDSSREIEE 354
                        330       340       350
                 ....*....|....*....|....*....|.
gi 227430340 605 ASSNGTSLT-GNEEEELSSQMSSFNEAMTQI 634
Cdd:COG5059  355 IKFDLSEDRsEIEILVFREQSQLSQSSLSGI 385
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
259-582 2.50e-55

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 192.80  E-value: 2.50e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 259 VRKRPLNKQELAKKEIDvisvPSKCLLLVHEPKlkvDLTK-YLENQAFCFDFAFD---ETASNEVVYRFTARPLVQTIFE 334
Cdd:cd01375    6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQQEDWSFKFDgvlHNASQELVYETVAKDVVSSALA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 335 GGKATCFAYGQTGSGKTHTMGGdlsGKSQNASKGIYAMASRDVF-LLKNQPRYRnlnLEVYVTFFEIYNGKVFDLLNKK- 412
Cdd:cd01375   79 GYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFrMIEERPTKA---YTVHVSYLEIYNEQLYDLLSTLp 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 413 ------AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR------- 479
Cdd:cd01375  153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 480 LHGKFSLVDLAGNERGADTSSADrQTRMEGAEINKSLLALKECIRALG-QNKAHTPFRESKLTQVLRDSfIGENSRTCMI 558
Cdd:cd01375  233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSdKDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                        330       340
                 ....*....|....*....|....
gi 227430340 559 AMISPGISSCEYTLNTLRYADRVK 582
Cdd:cd01375  311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
257-578 1.41e-53

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 188.37  E-value: 1.41e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 257 VCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPK-----LKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQT 331
Cdd:cd01368    5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKgsaanKSERNGGQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 332 IFEGGKATCFAYGQTGSGKTHTMggdlSGKSQNAskGIYAMaSRDVfLLKNQPRYrnlnlEVYVTFFEIYNGKVFDLLN- 410
Cdd:cd01368   84 LLHGKNGLLFTYGVTNSGKTYTM----QGSPGDG--GILPR-SLDV-IFNSIGGY-----SVFVSYIEIYNEYIYDLLEp 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 411 -------KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQI-LLRTKGRLHG 482
Cdd:cd01368  151 spssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSDG 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 483 ------------KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQN-----KAHTPFRESKLTQVLR 545
Cdd:cd01368  231 dvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLFQ 309
                        330       340       350
                 ....*....|....*....|....*....|...
gi 227430340 546 DSFIGEnSRTCMIAMISPGISSCEYTLNTLRYA 578
Cdd:cd01368  310 NYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
254-582 1.60e-52

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 184.63  E-value: 1.60e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 254 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPklkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 333
Cdd:cd01376    1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 334 EGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRnlnLEVYVTFFEIYNGKVFDLLN-KK 412
Cdd:cd01376   75 EGQNATVFAYGSTGAGKTFTMLGS------PEQPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEpAS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 413 AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRL------HGKFSL 486
Cdd:cd01376  146 KELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 487 VDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGI 565
Cdd:cd01376  226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                        330
                 ....*....|....*..
gi 227430340 566 SSCEYTLNTLRYADRVK 582
Cdd:cd01376  303 TFYQDTLSTLNFAARSR 319
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
253-582 3.87e-52

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 184.25  E-value: 3.87e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 253 HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVdltkylenqaFCFDFAFDETASNEVVYRFTARPLVQTI 332
Cdd:cd01373    1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKT----------FTFDHVADSNTNQESVFQSVGKPIVESC 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 333 FEGGKATCFAYGQTGSGKTHTMGGDLSG--KSQNASKGIYAMASRDVFLLKN---QPRYRNLNLEVYVTFFEIYNGKVFD 407
Cdd:cd01373   71 LSGYNGTIFAYGQTGSGKTYTMWGPSESdnESPHGLRGVIPRIFEYLFSLIQrekEKAGEGKSFLCKCSFLEIYNEQIYD 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 408 LLNK-KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHG---- 482
Cdd:cd01373  151 LLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfvni 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 483 ---KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN----KAHTPFRESKLTQVLRDSfIGENSRT 555
Cdd:cd01373  231 rtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALVDVahgkQRHVCYRDSKLTFLLRDS-LGGNAKT 308
                        330       340
                 ....*....|....*....|....*..
gi 227430340 556 CMIAMISPGISSCEYTLNTLRYADRVK 582
Cdd:cd01373  309 AIIANVHPSSKCFGETLSTLRFAQRAK 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
257-582 2.07e-35

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 144.69  E-value: 2.07e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  257 VCVRKRPLNKQELAKKEIDVISVPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 336
Cdd:PLN03188  102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  337 KATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVF------LLKNQPRY--RNLNLEVYVTFFEIYNGKVFDL 408
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFerlfarINEEQIKHadRQLKYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  409 LNKKAK-LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL--RTKGRLHG--- 482
Cdd:PLN03188  246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  483 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 553
Cdd:PLN03188  326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                         330       340
                  ....*....|....*....|....*....
gi 227430340  554 RTCMIAMISPGISSCEYTLNTLRYADRVK 582
Cdd:PLN03188  404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
257-525 9.48e-10

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 58.13  E-value: 9.48e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 257 VCVRKRPLNKQElakkeidvISVPSKCLLlvhepklkvdltkylenqafcFDFAFDETASNEVVYRfTARPLVQTIFEGG 336
Cdd:cd01363    1 VLVRVNPFKELP--------IYRDSKIIV---------------------FYRGFRRSESQPHVFA-IADPAYQSMLDGY 50
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 337 KATC-FAYGQTGSGKTHTMggdlsgksqnasKGIYamasrdvfllknqPRYrnlnlevyvtffeiyngkVFDLLNKKAKL 415
Cdd:cd01363   51 NNQSiFAYGESGAGKTETM------------KGVI-------------PYL------------------ASVAFNGINKG 87
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340 416 RVLEDSrqqvqvvGLQEYLVTCADDVIKMINMGSACRTSgQTFANSNSSRSHACFQIllrtkgrlhgkfsLVDLAGNERg 495
Cdd:cd01363   88 ETEGWV-------YLTEITVTLEDQILQANPILEAFGNA-KTTRNENSSRFGKFIEI-------------LLDIAGFEI- 145
                        250       260       270
                 ....*....|....*....|....*....|
gi 227430340 496 adtssadrqtrmegaeINKSLLALKECIRA 525
Cdd:cd01363  146 ----------------INESLNTLMNVLRA 159
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
250-409 6.21e-08

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 52.22  E-value: 6.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  250 IEEHR--ICVCVRKRPLNKQELAkkeidvISVPSKCLLLVHEPKlkvdltkylENQAFCFDFAFDETASNEVVYRFTaRP 327
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 227430340  328 LVQTIFEGGKATCFAYGQTGSGKThtmggdlSGKSQNASKGIYAMASRdvflLKNQPRYrnlnlEVYVTFFEIYNGKVFD 407
Cdd:pfam16796  79 LVQSCLDGYNVCIFAYGQTGSGSN-------DGMIPRAREQIFRFISS----LKKGWKY-----TIELQFVEIYNESSQD 142

                  ..
gi 227430340  408 LL 409
Cdd:pfam16796 143 LL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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