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Conserved domains on  [gi|20129149|ref|NP_608596|]
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uncharacterized protein Dmel_CG5561 [Drosophila melanogaster]

Protein Classification

HAD family hydrolase( domain architecture ID 229399)

HAD (haloacid dehalogenase) family hydrolase; the HAD family includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

EC:  3.6.3.-
Gene Ontology:  GO:0005524|GO:0016887|GO:0005215

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HAD_like super family cl21460
Haloacid Dehalogenase-like Hydrolases; The haloacid dehalogenase (HAD) superfamily includes ...
27-211 2.34e-32

Haloacid Dehalogenase-like Hydrolases; The haloacid dehalogenase (HAD) superfamily includes carbon and phosphorus hydrolases such as 2-haloalkonoate dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, among others. These proteins catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a conserve alpha/beta core domain, and many also possess a small cap domain, with varying folds and functions.


The actual alignment was detected with superfamily member cd07529:

Pssm-ID: 473868 [Multi-domain]  Cd Length: 192  Bit Score: 118.60  E-value: 2.34e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  27 ISYCIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNE-RTSHLI 105
Cdd:cd07529   1 VTHCIFDMDGLLLDTERIYTETTQEILARYGKTYTWDVKAKMMGRPASEAARIIVDELKLPMSLEEEFDEQQEaLAELFM 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 106 ANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFENFSTVVCADDPELRAP-KPEPDVYLIAMSRLGD- 183
Cdd:cd07529  81 GTAKLMPGAERLLRHLHAHNIPIALATSSCTRHFKLKTSRHKELFSLFHHVVTGDDPEVKGRgKPAPDIFLVAAKRFNEp 160
                       170       180
                ....*....|....*....|....*....
gi 20129149 184 -AGPDCTLVFDGTPKGVQAASDARLPVIM 211
Cdd:cd07529 161 pKDPSKCLVFEDSPNGVKAAKAAGMQVVM 189
 
Name Accession Description Interval E-value
HAD_AtGPP-like cd07529
subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and ...
27-211 2.34e-32

subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2; This subfamily includes Arabidopsis thaliana AtGpp1 and AtGpp2, and Drosophila GS1-like protein (Dmel\Gs1l) of unknown function. AtGpp1 and AtGpp2 are constitutively expressed in all the Arabidopsis tissues and unaffected under abiotic stress. Overexpression of AtGpp2 in transgenic Arabidopsis plants increases the specific DL-glycerol-3-phosphatase activity and improves the plants tolerance to salt, osmotic and oxidative stress. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319831 [Multi-domain]  Cd Length: 192  Bit Score: 118.60  E-value: 2.34e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  27 ISYCIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNE-RTSHLI 105
Cdd:cd07529   1 VTHCIFDMDGLLLDTERIYTETTQEILARYGKTYTWDVKAKMMGRPASEAARIIVDELKLPMSLEEEFDEQQEaLAELFM 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 106 ANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFENFSTVVCADDPELRAP-KPEPDVYLIAMSRLGD- 183
Cdd:cd07529  81 GTAKLMPGAERLLRHLHAHNIPIALATSSCTRHFKLKTSRHKELFSLFHHVVTGDDPEVKGRgKPAPDIFLVAAKRFNEp 160
                       170       180
                ....*....|....*....|....*....
gi 20129149 184 -AGPDCTLVFDGTPKGVQAASDARLPVIM 211
Cdd:cd07529 161 pKDPSKCLVFEDSPNGVKAAKAAGMQVVM 189
PLN02811 PLN02811
hydrolase
75-247 3.55e-30

hydrolase


Pssm-ID: 178407 [Multi-domain]  Cd Length: 220  Bit Score: 113.70  E-value: 3.55e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   75 EMSELFCRKLDIP--MSWESFRYELNERTSHLIANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFEN 152
Cdd:PLN02811  42 EAARIFVEESGLSdsLSPEDFLVEREAMLQDLFPTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSL 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  153 FSTVVCADDPELRAPKPEPDVYLIAMSR--LGDAGPDCTLVFDGTPKGVQAASDARLPVIMLAEKDLPCCWSELAALRFE 230
Cdd:PLN02811 122 MHHVVTGDDPEVKQGKPAPDIFLAAARRfeDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLS 201
                        170
                 ....*....|....*..
gi 20129149  231 YLDDFEPEMYNLPPFTD 247
Cdd:PLN02811 202 SLLDFKPEEWGLPPFPD 218
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
30-235 8.72e-25

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 98.74  E-value: 8.72e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  30 CIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNERTSHLIANP- 108
Cdd:COG0637   5 VIFDMDGTLVDSEPLHARAWREAFAELGIDLTEEEYRRLMGRSREDILRYLLEEYGLDLPEEELAARKEELYRELLAEEg 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 109 -PFMDGIERLVPHLRNSCMELGLITSSNEANyCSKIRGREDFFENFSTVVCADDpeLRAPKPEPDVYLIAMSRLGdAGPD 187
Cdd:COG0637  85 lPLIPGVVELLEALKEAGIKIAVATSSPREN-AEAVLEAAGLLDYFDVIVTGDD--VARGKPDPDIYLLAAERLG-VDPE 160
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 20129149 188 CTLVFDGTPKGVQAASDARLPVIMLAEKDLPCCWSELAALRFEYLDDF 235
Cdd:COG0637 161 ECVVFEDSPAGIRAAKAAGMRVVGVPDGGTAEEELAGADLVVDDLAEL 208
HAD-SF-IA-v3 TIGR01509
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ...
30-212 2.39e-19

haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273662 [Multi-domain]  Cd Length: 178  Bit Score: 83.62  E-value: 2.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149    30 CIFDLESAVFDTRHVYRKalkeLVRCYDK-RIPDILHVQSGPMTIsEMSELFCRKLDIPMSWESFRYELNERTSHLI--- 105
Cdd:TIGR01509   2 ILFDLDGVLVDTEFAIAK----LINREELgLVPDELGVSAVGRLE-LALRRFKAQYGRTISPEDAQLLYKQLFYEQIeee 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   106 ANPPFMDGIERLVPHLRNSCMELGLITSSNeANYCSKIRGREdFFENFSTVVCADDpeLRAPKPEPDVYLIAMSRLGDAg 185
Cdd:TIGR01509  77 AKLKPLPGVRALLEALRARGKKLALLTNSP-RAHKLVLALLG-LRDLFDVVIDSSD--VGLGKPDPDIYLQALKALGLE- 151
                         170       180
                  ....*....|....*....|....*..
gi 20129149   186 PDCTLVFDGTPKGVQAASDARLPVIML 212
Cdd:TIGR01509 152 PSECVFVDDSPAGIEAAKAAGMHTVGV 178
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
30-211 6.99e-08

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 51.43  E-value: 6.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149    30 CIFDLESAVFDTRHVYRKALKELVRCYDKRIP---DILHV--QSGPMTISEMSELFCRKLDIPMSWESFRYELNERTSHL 104
Cdd:pfam13419   1 IIFDFDGTLLDTEELIIKSFNYLLEEFGYGELseeEILKFigLPLREIFRYLGVSEDEEEKIEFYLRKYNEELHDKLVKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   105 IanppfmDGIERLVPHLRNSCMELGLITSSNEANYCSKIR--GREDFFEnfsTVVCADDpeLRAPKPEPDVYLIAMSRLG 182
Cdd:pfam13419  81 Y------PGIKELLEELKEQGYKLGIVTSKSRENVEEFLKqlGLEDYFD---VIVGGDD--VEGKKPDPDPILKALEQLG 149
                         170       180
                  ....*....|....*....|....*....
gi 20129149   183 dAGPDCTLVFDGTPKGVQAASDARLPVIM 211
Cdd:pfam13419 150 -LKPEEVIYVGDSPRDIEAAKNAGIKVIA 177
 
Name Accession Description Interval E-value
HAD_AtGPP-like cd07529
subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and ...
27-211 2.34e-32

subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2; This subfamily includes Arabidopsis thaliana AtGpp1 and AtGpp2, and Drosophila GS1-like protein (Dmel\Gs1l) of unknown function. AtGpp1 and AtGpp2 are constitutively expressed in all the Arabidopsis tissues and unaffected under abiotic stress. Overexpression of AtGpp2 in transgenic Arabidopsis plants increases the specific DL-glycerol-3-phosphatase activity and improves the plants tolerance to salt, osmotic and oxidative stress. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319831 [Multi-domain]  Cd Length: 192  Bit Score: 118.60  E-value: 2.34e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  27 ISYCIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNE-RTSHLI 105
Cdd:cd07529   1 VTHCIFDMDGLLLDTERIYTETTQEILARYGKTYTWDVKAKMMGRPASEAARIIVDELKLPMSLEEEFDEQQEaLAELFM 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 106 ANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFENFSTVVCADDPELRAP-KPEPDVYLIAMSRLGD- 183
Cdd:cd07529  81 GTAKLMPGAERLLRHLHAHNIPIALATSSCTRHFKLKTSRHKELFSLFHHVVTGDDPEVKGRgKPAPDIFLVAAKRFNEp 160
                       170       180
                ....*....|....*....|....*....
gi 20129149 184 -AGPDCTLVFDGTPKGVQAASDARLPVIM 211
Cdd:cd07529 161 pKDPSKCLVFEDSPNGVKAAKAAGMQVVM 189
PLN02811 PLN02811
hydrolase
75-247 3.55e-30

hydrolase


Pssm-ID: 178407 [Multi-domain]  Cd Length: 220  Bit Score: 113.70  E-value: 3.55e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   75 EMSELFCRKLDIP--MSWESFRYELNERTSHLIANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFEN 152
Cdd:PLN02811  42 EAARIFVEESGLSdsLSPEDFLVEREAMLQDLFPTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSL 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  153 FSTVVCADDPELRAPKPEPDVYLIAMSR--LGDAGPDCTLVFDGTPKGVQAASDARLPVIMLAEKDLPCCWSELAALRFE 230
Cdd:PLN02811 122 MHHVVTGDDPEVKQGKPAPDIFLAAARRfeDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLS 201
                        170
                 ....*....|....*..
gi 20129149  231 YLDDFEPEMYNLPPFTD 247
Cdd:PLN02811 202 SLLDFKPEEWGLPPFPD 218
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
30-235 8.72e-25

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 98.74  E-value: 8.72e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  30 CIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNERTSHLIANP- 108
Cdd:COG0637   5 VIFDMDGTLVDSEPLHARAWREAFAELGIDLTEEEYRRLMGRSREDILRYLLEEYGLDLPEEELAARKEELYRELLAEEg 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 109 -PFMDGIERLVPHLRNSCMELGLITSSNEANyCSKIRGREDFFENFSTVVCADDpeLRAPKPEPDVYLIAMSRLGdAGPD 187
Cdd:COG0637  85 lPLIPGVVELLEALKEAGIKIAVATSSPREN-AEAVLEAAGLLDYFDVIVTGDD--VARGKPDPDIYLLAAERLG-VDPE 160
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 20129149 188 CTLVFDGTPKGVQAASDARLPVIMLAEKDLPCCWSELAALRFEYLDDF 235
Cdd:COG0637 161 ECVVFEDSPAGIRAAKAAGMRVVGVPDGGTAEEELAGADLVVDDLAEL 208
HAD-SF-IA-v3 TIGR01509
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ...
30-212 2.39e-19

haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273662 [Multi-domain]  Cd Length: 178  Bit Score: 83.62  E-value: 2.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149    30 CIFDLESAVFDTRHVYRKalkeLVRCYDK-RIPDILHVQSGPMTIsEMSELFCRKLDIPMSWESFRYELNERTSHLI--- 105
Cdd:TIGR01509   2 ILFDLDGVLVDTEFAIAK----LINREELgLVPDELGVSAVGRLE-LALRRFKAQYGRTISPEDAQLLYKQLFYEQIeee 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   106 ANPPFMDGIERLVPHLRNSCMELGLITSSNeANYCSKIRGREdFFENFSTVVCADDpeLRAPKPEPDVYLIAMSRLGDAg 185
Cdd:TIGR01509  77 AKLKPLPGVRALLEALRARGKKLALLTNSP-RAHKLVLALLG-LRDLFDVVIDSSD--VGLGKPDPDIYLQALKALGLE- 151
                         170       180
                  ....*....|....*....|....*..
gi 20129149   186 PDCTLVFDGTPKGVQAASDARLPVIML 212
Cdd:TIGR01509 152 PSECVFVDDSPAGIEAAKAAGMHTVGV 178
PLN02940 PLN02940
riboflavin kinase
27-247 1.02e-18

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 85.27  E-value: 1.02e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   27 ISYCIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNERTSHLIA 106
Cdd:PLN02940  11 VSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQWC 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  107 NPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFENFSTVVCADdpELRAPKPEPDVYLIAMSRLGDAGP 186
Cdd:PLN02940  91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGD--EVEKGKPSPDIFLEAAKRLNVEPS 168
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 20129149  187 DCtLVFDGTPKGVQAASDARLPVImlAEKDLPCCWSELAALR--FEYLDDFEPEMYNLPPFTD 247
Cdd:PLN02940 169 NC-LVIEDSLPGVMAGKAAGMEVI--AVPSIPKQTHLYSSADevINSLLDLQPEKWGLPPFND 228
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
30-213 1.46e-17

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 77.66  E-value: 1.46e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  30 CIFDLESAVFDTRHVYRKALKELVRcydkripdilhvqsgpmtisemselfcrkldipmSWESFRYELNERTshlianPP 109
Cdd:cd07505   2 VIFDMDGVLIDTEPLHRQAWQLLER----------------------------------KNALLLELIASEG------LK 41
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 110 FMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFENFSTVVCADDPElrAPKPEPDVYLIAMSRLGDAGPDCt 189
Cdd:cd07505  42 LKPGVVELLDALKAAGIPVAVATSSSRRNVELLLLELGLLRGYFDVIVSGDDVE--RGKPAPDIYLLAAERLGVDPERC- 118
                       170       180
                ....*....|....*....|....
gi 20129149 190 LVFDGTPKGVQAASDARLPVIMLA 213
Cdd:cd07505 119 LVFEDSLAGIEAAKAAGMTVVAVP 142
HAD_BPGM-like cd16423
uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized ...
87-210 1.38e-13

uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW; This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319859 [Multi-domain]  Cd Length: 169  Bit Score: 67.28  E-value: 1.38e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  87 PMSWESFRYELNERTSHLIA-------NPPFMDGIERLVPHLRNSCMELGLITSSN--EANYCSKIRGREDFFEnfsTVV 157
Cdd:cd16423  15 PLWYEAWQELLNERRNELIKrqfsektDLPPIEGVKELLEFLKEKGIKLAVASSSPrrWIEPHLERLGLLDYFE---VIV 91
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 20129149 158 CADDPElrAPKPEPDVYLIAMSRLGDAGPDCtLVFDGTPKGVQAASDARLPVI 210
Cdd:cd16423  92 TGDDVE--KSKPDPDLYLEAAERLGVNPEEC-VVIEDSRNGVLAAKAAGMKCV 141
Gph COG0546
Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];
31-213 8.93e-10

Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];


Pssm-ID: 440312 [Multi-domain]  Cd Length: 214  Bit Score: 57.63  E-value: 8.93e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  31 IFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQS--GPMTISEMSELFcrKLDIPMSWESFRYELNER-TSHLIAN 107
Cdd:COG0546   5 LFDLDGTLVDSAPDIAAALNEALAELGLPPLDLEELRAliGLGLRELLRRLL--GEDPDEELEELLARFRELyEEELLDE 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 108 PPFMDGIERLVPHLRNSCMELGLITSSNEAnYCSKIRGREDFFENFSTVVCADDpeLRAPKPEPDVYLIAMSRLGDAGPD 187
Cdd:COG0546  83 TRLFPGVRELLEALKARGIKLAVVTNKPRE-FAERLLEALGLDDYFDAIVGGDD--VPPAKPKPEPLLEALERLGLDPEE 159
                       170       180
                ....*....|....*....|....*.
gi 20129149 188 CTLVFDgTPKGVQAASDARLPVIMLA 213
Cdd:COG0546 160 VLMVGD-SPHDIEAARAAGVPFIGVT 184
HAD_CbbY-like cd07528
subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides ...
113-211 3.10e-09

subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides xylulose-1,5-bisphosphate phosphatase CbbY; This family includes Rhodobacter sphaeroides and Arabidopsis thaliana xylulose-1,5-bisphosphate phosphatase CbbY which convert xylulose-1,5-bisphosphate (a potent inhibitor of Ribulose-1,5-bisphosphate carboxylase/oxygenase, Rubisco), to the non-inhibitory compound xylulose-5-phosphate. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319830 [Multi-domain]  Cd Length: 199  Bit Score: 55.85  E-value: 3.10e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 113 GIERLVPHLRNSCMELGLITSSNEANY---CSKIRGrEDFFENFSTVVCADDpeLRAPKPEPDVYLIAMSRLGDAGPDCt 189
Cdd:cd07528  99 GVARLIDEAKAAGVRLAIATTTSPANVdalLSALLG-PERRAIFDAIAAGDD--VAEKKPDPDIYLLALERLGVSPSDC- 174
                        90       100
                ....*....|....*....|..
gi 20129149 190 LVFDGTPKGVQAASDARLPVIM 211
Cdd:cd07528 175 LAIEDSAIGLQAAKAAGLPCIV 196
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
27-235 3.00e-08

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 53.11  E-value: 3.00e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  27 ISYCIFDLESAVFDTRHVYRKALKELV--------------RCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWES 92
Cdd:COG1011   1 IKAVLFDLDGTLLDFDPVIAEALRALAerlglldeaeelaeAYRAIEYALWRRYERGEITFAELLRRLLEELGLDLAEEL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  93 FRYELNERTSHLianpPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRgREDFFENFSTVVCADdpELRAPKPEPD 172
Cdd:COG1011  81 AEAFLAALPELV----EPYPDALELLEALKARGYRLALLTNGSAELQEAKLR-RLGLDDLFDAVVSSE--EVGVRKPDPE 153
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 20129149 173 VYLIAMSRLGdAGPDCTLVFDGTPKG-VQAASDARLPVIMLAEKDLPCCWSELAALRFEYLDDF 235
Cdd:COG1011 154 IFELALERLG-VPPEEALFVGDSPETdVAGARAAGMRTVWVNRSGEPAPAEPRPDYVISDLAEL 216
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
30-211 6.99e-08

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 51.43  E-value: 6.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149    30 CIFDLESAVFDTRHVYRKALKELVRCYDKRIP---DILHV--QSGPMTISEMSELFCRKLDIPMSWESFRYELNERTSHL 104
Cdd:pfam13419   1 IIFDFDGTLLDTEELIIKSFNYLLEEFGYGELseeEILKFigLPLREIFRYLGVSEDEEEKIEFYLRKYNEELHDKLVKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   105 IanppfmDGIERLVPHLRNSCMELGLITSSNEANYCSKIR--GREDFFEnfsTVVCADDpeLRAPKPEPDVYLIAMSRLG 182
Cdd:pfam13419  81 Y------PGIKELLEELKEQGYKLGIVTSKSRENVEEFLKqlGLEDYFD---VIVGGDD--VEGKKPDPDPILKALEQLG 149
                         170       180
                  ....*....|....*....|....*....
gi 20129149   183 dAGPDCTLVFDGTPKGVQAASDARLPVIM 211
Cdd:pfam13419 150 -LKPEEVIYVGDSPRDIEAAKNAGIKVIA 177
HAD-SF-IA-v1 TIGR01549
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or ...
31-206 3.31e-06

haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273686 [Multi-domain]  Cd Length: 164  Bit Score: 46.23  E-value: 3.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149    31 IFDLESAVFDTRHVYRKALKELVRCYDKRIPDI--LHvQSGPMTISEMselfcrKLDIPMSWESFRYELNERtshLIANP 108
Cdd:TIGR01549   3 LFDIDGTLVDIKFAIRRAFPQTFEEFGLDPASFkaLK-QAGGLAEEEW------YRIATSALEELQGRFWSE---YDAEE 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   109 PFMDGIERLVPHLRNSCMELGLITSSNEANYcSKIRGREDFFENFSTVVCADDPelrAPKPEPDVYLIAMSRLGdAGPDC 188
Cdd:TIGR01549  73 AYIRGAADLLARLKSAGIKLGIISNGSLRAQ-KLLLRLFGLGDYFELILVSDEP---GSKPEPEIFLAALESLG-VPPEV 147
                         170
                  ....*....|....*...
gi 20129149   189 TLVFDgTPKGVQAASDAR 206
Cdd:TIGR01549 148 LHVGD-NLNDIEGARNAG 164
HAD_BPGM_like cd07526
subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli ...
163-210 9.72e-06

subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH; This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319828 [Multi-domain]  Cd Length: 141  Bit Score: 44.62  E-value: 9.72e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 20129149 163 ELRAPKPEPDVYLIAMSRLGdAGPDCTLVFDGTPKGVQAASDARLPVI 210
Cdd:cd07526  91 DVGRGKPAPDLFLHAAAQMG-VAPERCLVIEDSPTGVRAALAAGMTVF 137
HAD_ScGPP-like cd07527
subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae ...
30-202 2.35e-05

subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p); This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319829 [Multi-domain]  Cd Length: 205  Bit Score: 44.26  E-value: 2.35e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  30 CIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNERTSHLIAnpp 109
Cdd:cd07527   2 LLFDMDGTLVDSTPAVERAWHKWAKEHGVDPEEVLKVSHGRRAIDVIRKLAPDDADIELVLALETEEPESYPEGVIA--- 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 110 fMDGIERLVPHLRNSCMELGLITSSneANYCSKIRgredfFENF-----STVVCADDpeLRAPKPEPDVYLIAMSRLGDA 184
Cdd:cd07527  79 -IPGAVDLLASLPAAGDRWAIVTSG--TRALAEAR-----LEAAglphpEVLVTADD--VKNGKPDPEPYLLGAKLLGLD 148
                       170
                ....*....|....*...
gi 20129149 185 GPDCtLVFDGTPKGVQAA 202
Cdd:cd07527 149 PSDC-VVFEDAPAGIKAG 165
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
30-205 3.08e-05

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 44.11  E-value: 3.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149    30 CIFDLESAVFDTRHVYRKALKELVRCYDKRIPDILHVQSGPMTISEMSELFCRK----LDIPMSWESFRYELNERTSHLI 105
Cdd:pfam00702   4 VVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTARLLLGkrdwLEELDILRGLVETLEAEGLTVV 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149   106 ANPPF-----------MDGIERLVPHLRNSCMELGLITSSNEANYcSKIRGREDFFENFSTVVCADDpeLRAPKPEPDVY 174
Cdd:pfam00702  84 LVELLgvialadelklYPGAAEALKALKERGIKVAILTGDNPEAA-EALLRLLGLDDYFDVVISGDD--VGVGKPKPEIY 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 20129149   175 LIAMSRLGdAGPDCTLVFDGTPKGVQAASDA 205
Cdd:pfam00702 161 LAALERLG-VKPEEVLMVGDGVNDIPAAKAA 190
HAD_BPGM cd02598
beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); ...
31-210 3.15e-05

beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); Lactococcus lactis beta-PGM catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), forming beta-D-glucose 1,6-(bis)phosphate as an intermediate. In the forward G6P-forming direction, this reaction links polysaccharide phosphorolysis to glycolysis, in the reverse direction, the reaction provides G1P for the biosynthesis of exo-polysaccharides. This subfamily belongs to the beta-phosphoglucomutase-like family whose other members include Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319788 [Multi-domain]  Cd Length: 174  Bit Score: 43.82  E-value: 3.15e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  31 IFDLESAVFDTRHVYRKALKelvrcydkripdilhvqsgpmTISEMSELFCRKLDIPmswesfrYELNERTSHLIANPpf 110
Cdd:cd02598   3 IFDLDGVITDTAEYHYRAWK---------------------KLADKEELAARKNRIY-------VELIEELTPVDVLP-- 52
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 111 mdGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFFEnfstvVCADDPELRAPKPEPDVYLIAMSRLGDAGPDCtL 190
Cdd:cd02598  53 --GIASLLVDLKAKGIKIALASASKNAPKILEKLGLAEYFD-----AIVDGAVLAKGKPDPDIFLAAAEGLGLNPKDC-I 124
                       170       180
                ....*....|....*....|
gi 20129149 191 VFDGTPKGVQAASDARLPVI 210
Cdd:cd02598 125 GVEDAQAGIRAIKAAGFLVV 144
PLN03243 PLN03243
haloacid dehalogenase-like hydrolase; Provisional
145-251 4.16e-05

haloacid dehalogenase-like hydrolase; Provisional


Pssm-ID: 215644 [Multi-domain]  Cd Length: 260  Bit Score: 44.25  E-value: 4.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  145 GREDFFenfSTVVCADDpeLRAPKPEPDVYLIAMSRLGDAgPDCTLVFDGTPKGVQAASDARL---------PVIMLAEK 215
Cdd:PLN03243 147 GMEGFF---SVVLAAED--VYRGKPDPEMFMYAAERLGFI-PERCIVFGNSNSSVEAAHDGCMkcvavagkhPVYELSAG 220
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 20129149  216 DLPCC-WSELAALRFEYLDDFEPemynlPPFTDPAPK 251
Cdd:PLN03243 221 DLVVRrLDDLSVVDLKNLSDLDS-----PEFQIPEPQ 252
PRK10725 PRK10725
fructose-1-phosphate/6-phosphogluconate phosphatase;
153-210 5.75e-05

fructose-1-phosphate/6-phosphogluconate phosphatase;


Pssm-ID: 182679 [Multi-domain]  Cd Length: 188  Bit Score: 43.14  E-value: 5.75e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 20129149  153 FSTVVCADDpeLRAPKPEPDVYLIAMSRLGDAGPDCtLVFDGTPKGVQAASDARLPVI 210
Cdd:PRK10725 129 FDAVVAADD--VQHHKPAPDTFLRCAQLMGVQPTQC-VVFEDADFGIQAARAAGMDAV 183
PRK11587 PRK11587
putative phosphatase; Provisional
168-210 5.58e-04

putative phosphatase; Provisional


Pssm-ID: 183215 [Multi-domain]  Cd Length: 218  Bit Score: 40.36  E-value: 5.58e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 20129149  168 KPEPDVYLIAMSRLGDAGPDCTLVFDGtPKGVQAASDARLPVI 210
Cdd:PRK11587 138 KPEPDAYLLGAQLLGLAPQECVVVEDA-PAGVLSGLAAGCHVI 179
HAD_PPase cd02616
pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX ...
31-205 4.99e-03

pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX which hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr (P-Ser-HPr) dephosphorylation by the bifunctional enzyme HPr kinase/phosphorylase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319797 [Multi-domain]  Cd Length: 207  Bit Score: 37.64  E-value: 4.99e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149  31 IFDLESAVFDTRHVYRKALKELVRCYDKRIP---DILHVQSGPMTisemsELFcRKLDiPMSWESFRYE-LNERTSHLIA 106
Cdd:cd02616   5 LFDLDGTLIDTNELIIKSFNHTLKEYGLEGYtreEVLPFIGPPLR-----ETF-EKID-PDKLEDMVEEfRKYYREHNDD 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20129149 107 NPPFMDGIERLVPHLRNSCMELGLITSSNE--ANYCSKIRGREDFFEnfsTVVCADDPELRAPKPEPdvYLIAMSRLGdA 184
Cdd:cd02616  78 LTKEYPGVYETLARLKSQGIKLGVVTTKLRetALKGLKLLGLDKYFD---VIVGGDDVTHHKPDPEP--VLKALELLG-A 151
                       170       180
                ....*....|....*....|.
gi 20129149 185 GPDCTLVFDGTPKGVQAASDA 205
Cdd:cd02616 152 EPEEALMVGDSPHDILAGKNA 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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