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Conserved domains on  [gi|24581847|ref|NP_608903|]
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uncharacterized protein Dmel_CG14036 [Drosophila melanogaster]

Protein Classification

CHHC zinc finger protein( domain architecture ID 10526107)

CHHC zinc finger protein similar to human U11/U12 small nuclear ribonucleoprotein 48 kDa protein that may be involved in U12-type 5' splice site recognition; the CHHC region interacts with the 5' splice site of the U12-type intron

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-U11-48K pfam05253
U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating ...
 8-30 2.16e-06

U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function.


:

Pssm-ID: 461603  Cd Length: 25  Bit Score: 40.50  E-value: 2.16e-06
                         10        20
                 ....*....|....*....|...
gi 24581847    8 ICPYDKSHRILLFRMPKHLIKCE 30
Cdd:pfam05253  3 PCPYNPSHRVPESRLEKHLKKCP 25
zf-U11-48K pfam05253
U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating ...
 38-59 3.04e-03

U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function.


:

Pssm-ID: 461603  Cd Length: 25  Bit Score: 32.41  E-value: 3.04e-03
                         10        20
                 ....*....|....*....|....
gi 24581847   38 LQTCKYNATHRV--QDMEKHLKEC 59
Cdd:pfam05253  1 LVPCPYNPSHRVpeSRLEKHLKKC 24
 
Name Accession Description Interval E-value
zf-U11-48K pfam05253
U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating ...
 8-30 2.16e-06

U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function.


Pssm-ID: 461603  Cd Length: 25  Bit Score: 40.50  E-value: 2.16e-06
                         10        20
                 ....*....|....*....|...
gi 24581847    8 ICPYDKSHRILLFRMPKHLIKCE 30
Cdd:pfam05253  3 PCPYNPSHRVPESRLEKHLKKCP 25
zf-U11-48K pfam05253
U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating ...
 38-59 3.04e-03

U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function.


Pssm-ID: 461603  Cd Length: 25  Bit Score: 32.41  E-value: 3.04e-03
                         10        20
                 ....*....|....*....|....
gi 24581847   38 LQTCKYNATHRV--QDMEKHLKEC 59
Cdd:pfam05253  1 LVPCPYNPSHRVpeSRLEKHLKKC 24
 
Name Accession Description Interval E-value
zf-U11-48K pfam05253
U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating ...
 8-30 2.16e-06

U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function.


Pssm-ID: 461603  Cd Length: 25  Bit Score: 40.50  E-value: 2.16e-06
                         10        20
                 ....*....|....*....|...
gi 24581847    8 ICPYDKSHRILLFRMPKHLIKCE 30
Cdd:pfam05253  3 PCPYNPSHRVPESRLEKHLKKCP 25
zf-U11-48K pfam05253
U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating ...
 38-59 3.04e-03

U11-48K-like CHHC zinc finger; This zinc binding domain has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function.


Pssm-ID: 461603  Cd Length: 25  Bit Score: 32.41  E-value: 3.04e-03
                         10        20
                 ....*....|....*....|....
gi 24581847   38 LQTCKYNATHRV--QDMEKHLKEC 59
Cdd:pfam05253  1 LVPCPYNPSHRVpeSRLEKHLKKC 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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