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Conserved domains on  [gi|24582041|ref|NP_608966|]
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uncharacterized protein Dmel_CG9029, isoform A [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09752 super family cl32407
AIDA-I family autotransporter YfaL;
24-64 1.03e-06

AIDA-I family autotransporter YfaL;


The actual alignment was detected with superfamily member PRK09752:

Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 45.82  E-value: 1.03e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 24582041    24 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTG 64
Cdd:PRK09752  919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
25-116 2.35e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 2.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582041   25 PLPEPIPDPSPVADPSPAANP---SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 101
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPaaaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

                         90
                 ....*....|....*
gi 24582041  102 APQKLDDVQADPQPA 116
Cdd:PRK14951 467 APEPAVASAAPAPAA 481
 
Name Accession Description Interval E-value
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
24-64 1.03e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 45.82  E-value: 1.03e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 24582041    24 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTG 64
Cdd:PRK09752  919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 29-97 2.19e-05

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 42.00  E-value: 2.19e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24582041    29 PIPDPSPVADPSPAANP----SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATllEANKQDNFAVP 97
Cdd:pfam05616 326 PRPDLTPASAEAPHAQPlpevSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQ--PGTRPDSPAVP 396
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 23-73 3.07e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 41.47  E-value: 3.07e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 24582041   23 GSPL-PEPIPDPSPvaDPSPAANPSPVADPKPVAEPsaNPGTGTNAEPGPRS 73
Cdd:NF033845 549 GPPVdPEPSPEPEP--EPTPDPEPSPDPDPEPSPDP--DPDSDSDSDSGSDS 596
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 25-116 2.35e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 2.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582041   25 PLPEPIPDPSPVADPSPAANP---SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 101
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPaaaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

                         90
                 ....*....|....*
gi 24582041  102 APQKLDDVQADPQPA 116
Cdd:PRK14951 467 APEPAVASAAPAPAA 481
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 25-73 2.35e-03

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 36.08  E-value: 2.35e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 24582041   25 PLPEPIPDPspvaDPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRS 73
Cdd:NF033845 560 PEPEPTPDP----EPSPDPDPEPSPDPDPDSDSDSDSGSDSDSGSDSDS 604
 
Name Accession Description Interval E-value
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
24-64 1.03e-06

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 45.82  E-value: 1.03e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 24582041    24 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTG 64
Cdd:PRK09752  919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVG 959
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 29-97 2.19e-05

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 42.00  E-value: 2.19e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24582041    29 PIPDPSPVADPSPAANP----SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATllEANKQDNFAVP 97
Cdd:pfam05616 326 PRPDLTPASAEAPHAQPlpevSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQ--PGTRPDSPAVP 396
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 25-92 2.41e-05

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 42.00  E-value: 2.41e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24582041    25 PLPEPIPDPSPVADPSPAANPSPVADPKPvaEPSANPgtgtNAEPGPRSKPNPSPSAPATLLEANKQD 92
Cdd:pfam05616 342 PLPEVSPAENPANNPDPDENPGTRPNPEP--DPDLNP----DANPDTDGQPGTRPDSPAVPDRPNGRD 403
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 23-73 3.07e-05

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 41.47  E-value: 3.07e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 24582041   23 GSPL-PEPIPDPSPvaDPSPAANPSPVADPKPVAEPsaNPGTGTNAEPGPRS 73
Cdd:NF033845 549 GPPVdPEPSPEPEP--EPTPDPEPSPDPDPEPSPDP--DPDSDSDSDSGSDS 596
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 25-116 2.35e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 2.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24582041   25 PLPEPIPDPSPVADPSPAANP---SPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLET 101
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPaaaASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

                         90
                 ....*....|....*
gi 24582041  102 APQKLDDVQADPQPA 116
Cdd:PRK14951 467 APEPAVASAAPAPAA 481
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
27-60 3.21e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 38.49  E-value: 3.21e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 24582041   27 PEPIPDPSPVADPSPAANPSPVADPKPVAEPSAN 60
Cdd:PRK14960 412 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPN 445
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 29-84 1.93e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 36.41  E-value: 1.93e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 24582041    29 PIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPAT 84
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 25-73 2.35e-03

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 36.08  E-value: 2.35e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 24582041   25 PLPEPIPDPspvaDPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRS 73
Cdd:NF033845 560 PEPEPTPDP----EPSPDPDPEPSPDPDPDSDSDSDSGSDSDSGSDSDS 604
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 27-82 4.08e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 35.27  E-value: 4.08e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 24582041   27 PEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAP 82
Cdd:PRK01297  17 PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72
PHA03247 PHA03247
large tegument protein UL36; Provisional
 25-103 4.09e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 35.68  E-value: 4.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24582041    25 PLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPATLLEANKQDNFAVPLLETAP 103
Cdd:PHA03247 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 18-73 5.80e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 35.05  E-value: 5.80e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 24582041    18 LHGAYGSPLPEPIPDpSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRS 73
Cdd:PTZ00395  511 FHGAAGNSVGNPFAS-RPFGSAPYGGNAATTADPNGIAKREDHPEGGTNRQKYEQS 565
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 24-84 8.52e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 34.48  E-value: 8.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24582041    24 SPLPEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSAPAT 84
Cdd:PRK12270   57 APAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
17-53 9.31e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 34.25  E-value: 9.31e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 24582041   17 VLHGAYGSPLPEPIPDPSPVADPSPAANPSPVADPKP 53
Cdd:PRK14960 408 AMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQP 444
PHA03247 PHA03247
large tegument protein UL36; Provisional
 27-81 9.92e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 34.53  E-value: 9.92e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 24582041    27 PEPIPDPSPVADPSPAANPSPVADPKPVAEPSANPGTGTNAEPGPRSKPNPSPSA 81
Cdd:PHA03247  410 PVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPD 464
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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