|
Name |
Accession |
Description |
Interval |
E-value |
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
12-321 |
5.93e-111 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 325.29 E-value: 5.93e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSpQQFKSMVLELNASDDRGIGI 91
Cdd:PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG-EDWRENFLELNASDERGIDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 92 VRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQD 171
Cdd:PRK00440 85 IRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 172 QMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSL 251
Cdd:PRK00440 165 AVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGDFT 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 252 EdSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAF 321
Cdd:PRK00440 245 E-AREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKL 313
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
11-326 |
1.04e-79 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 245.79 E-value: 1.04e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQqFKSMVLELNASDDRGIG 90
Cdd:PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGID 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 91 IVRGQILNFASTR-TIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLS 169
Cdd:PLN03025 80 VVRNKIKMFAQKKvTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 170 QDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGs 249
Cdd:PLN03025 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKG- 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19921076 250 SLEDSFKTVESAkYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRD 326
Cdd:PLN03025 239 KFDDACDGLKQL-YDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVRE 314
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
11-321 |
5.74e-63 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 203.30 E-value: 5.74e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSpQQFKSMVLELNASD----- 85
Cdd:PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADffdqg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 86 -------DRGIGIVRG-------------QILN-FASTRTIFCDtFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCV 144
Cdd:PRK12402 82 kkylvedPRFAHFLGTdkrirsskidnfkHVLKeYASYRPLSAD-YKTILLDNAEALREDAQQALRRIMEQYSRTCRFII 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 145 ICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNED 224
Cdd:PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITME 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 225 NVYMCVG-YPLRQDIEQILKALLSGSSlEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMnKLIVKLAQIEER 303
Cdd:PRK12402 241 AAYEALGdVGTDEVIESLLDAAEAGDF-TDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLA-RLHRLAADADAR 318
|
330
....*....|....*...
gi 19921076 304 LAKGCTEVAQTAALVAAF 321
Cdd:PRK12402 319 LTDGANDRIQLEALLAEL 336
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
58-321 |
6.72e-60 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 205.84 E-value: 6.72e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 58 TSTILACARQLYSpQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYT 137
Cdd:PRK04132 580 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 138 DNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMA 217
Cdd:PRK04132 659 SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 218 FDTVNEDNVYMCVGYPLRQDIEQILKALLSGSSLEDSFKTVEsAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKL 297
Cdd:PRK04132 739 DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLRE-ILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKI 817
|
250 260
....*....|....*....|....
gi 19921076 298 AQIEERLAKGCTEVAQTAALVAAF 321
Cdd:PRK04132 818 GEYNFRLVEGANEMIQLEALLAQF 841
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
28-307 |
1.29e-51 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 172.47 E-value: 1.29e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 28 HEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLY--SPQQFKSM---------------VLELNA---SDD 86
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHaLLLHGPPGIGKTTLALALARDLLceNPEGGKACgqchsrlmaagnhpdLLELNPeekSDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 87 RGIGIVRgQILNFASTRTIFcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFA 166
Cdd:COG0470 81 IGIDQIR-ELGEFLSLTPLE-GGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 167 PLSQDQMMPRLEKiieaeaVQITEDGKRALLTLAKGDMRKVLNVLQSTvmafdtvnednvymcvgyPLRQDIEQILKALL 246
Cdd:COG0470 159 PPSEEEALAWLRE------EGVDEDALEAILRLAGGDPRAAINLLQAL------------------AGRKELLEDLAALL 214
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19921076 247 SGSsleDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKG 307
Cdd:COG0470 215 SRD---RALELLDALLKAEALELLDWLLKWLLDNLPLEYAGEDLARAYEALSEADRRLGRY 272
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
13-213 |
1.66e-45 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 157.07 E-value: 1.66e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGP-PGTGKTSTILACARQLYSPQQFksmvleLNASDDRgIGI 91
Cdd:PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPsPGTGKTTVAKALCNEVGAEVLF------VNGSDCR-IDF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 92 VRGQILNFASTRTiFCDTFKLIILDEAD-AMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQ 170
Cdd:PHA02544 84 VRNRLTRFASTVS-LTGGGKVIIIDEFDrLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTK 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 19921076 171 D-------QMMPRLEKIIEAEAVQITedgKRALLTLAKG---DMRKVLNVLQS 213
Cdd:PHA02544 163 EeqiemmkQMIVRCKGILEAEGVEVD---MKVLAALVKKnfpDFRRTINELQR 212
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
10-226 |
4.51e-38 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 141.21 E-value: 4.51e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 10 RMPWVEKYRPSGLDDLISHEEIISTITRFISR--KQLPH--LLFYGPPGTGKTSTILACARQlyspqqFKSMVLELNASD 85
Cdd:PRK04195 1 MMPWVEKYRPKTLSDVVGNEKAKEQLREWIESwlKGKPKkaLLLYGPPGVGKTSLAHALAND------YGWEVIELNASD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 86 DRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAM--TNDA--QNALRRIIEKyTDNVrfcVIC---NYLSKIIPALQS 158
Cdd:PRK04195 75 QRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIhgNEDRggARAILELIKK-AKQP---IILtanDPYDPSLRELRN 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19921076 159 RCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDgkrALLTLAK---GDMRKVLNVLQSTVMAFDTVNEDNV 226
Cdd:PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDE---ALKEIAErsgGDLRSAINDLQAIAEGYGKLTLEDV 218
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
19-280 |
4.10e-28 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 111.44 E-value: 4.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 19 PSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILACA-----RQLYSP-------QQFKSM----VL 79
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHaYLFTGPRGVGKTTLarILAKAlncenGPTGEPcgecescRAIAAGshpdVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 80 ELNASDDRgIGI--VRG--QILNFASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPA 155
Cdd:COG2812 86 EIDAEASN-IGVddIREliEKVSYAPVE----GRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 156 LQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQStVMAFDTVnednvymcvgyPLR 235
Cdd:COG2812 161 ILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQ-AIAFGLL-----------DRR 228
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 19921076 236 QDIEQILKALLSGsSLEDSFKTVESAkYARGLALEDIITELHLFV 280
Cdd:COG2812 229 ELLLDLLEALLAG-DVAALLALAEEL-AKRGRDLKRFLDDLLSLL 271
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
8-231 |
1.82e-24 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 102.47 E-value: 1.82e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 8 AVRMpwvekyRPSGLDDLISHEEII---STITRFISRKQLPHLLFYGPPGTGKTSTILACArqlyspQQFKSMVLELNAS 84
Cdd:PRK13342 3 AERM------RPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIA------GATDAPFEALSAV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 85 DDrGIGIVRgQILNFASTRTIFCDTFkLIILDEADAMTNDAQNALRRIIEKY--------TDNVRFcvicnylsKIIPAL 156
Cdd:PRK13342 71 TS-GVKDLR-EVIEEARQRRSAGRRT-ILFIDEIHRFNKAQQDALLPHVEDGtitligatTENPSF--------EVNPAL 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19921076 157 QSRCTRFRFAPLSQDQMMPRLEKIIEAE---AVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVG 231
Cdd:PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKergLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQ 217
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
12-292 |
3.12e-24 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 102.59 E-value: 3.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILACARQLYSPQQFKSM----------- 77
Cdd:PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHaYIFAGPRGTGKTTIarILAKVLNCLNPQEGEPCgkcencveidk 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -----VLELNASDDRGIGIVRGqiLNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKI 152
Cdd:PRK14953 85 gsfpdLIEIDAASNRGIDDIRA--LRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 153 IPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVG 231
Cdd:PRK14953 163 PPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLdQASTYGEGKVTIKVVEEFLG 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19921076 232 YPLRQDIEQILKALLSGSSLE--DSFKTVESAKYARGLALEDIITELH--LFVMRLELPMSVMNK 292
Cdd:PRK14953 243 IVSQESVRKFLNLLLESDVDEaiKFLRTLEEKGYNLNKFWKQLEEEIRniLLNKSLKNPEEVFQV 307
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
233-320 |
1.54e-23 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 92.54 E-value: 1.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 233 PLRQDIEQILKALLSGSsLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVA 312
Cdd:pfam08542 1 PHPEDIEEILNSCLNGD-FDEAYKKVRELLVEKGYSLQDIITQLHRVVKSLDLPEEVKLELLEKLGEIEYRLSEGASEKL 79
|
....*...
gi 19921076 313 QTAALVAA 320
Cdd:pfam08542 80 QLSALLAA 87
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
26-167 |
5.41e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.98 E-value: 5.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 26 ISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPqqfKSMVLELNASDDRGIGIVRGQILNFASTRTI 105
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19921076 106 F---CDTFKLIILDEADAMTNDAQNALRRIIEKY------TDNVRFCVICNY--LSKIIPALQSRC-TRFRFAP 167
Cdd:cd00009 78 ElaeKAKPGVLFIDEIDSLSRGAQNALLRVLETLndlridRENVRVIGATNRplLGDLDRALYDRLdIRIVIPL 151
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
16-218 |
1.31e-22 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 98.34 E-value: 1.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILACARQLYSPQ----------------QFKS 76
Cdd:PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHaYLFTGPRGVGKTSTarILAKAVNCTTNDpkgrpcgtcemcraiaEGSA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 77 M-VLELNASDDRGIGIVRGQI--LNFASTRTifcdTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKII 153
Cdd:PRK14950 89 VdVIEMDAASHTSVDDAREIIerVQFRPALA----RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19921076 154 PALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTvMAF 218
Cdd:PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQL-ATT 228
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
16-276 |
4.26e-22 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 96.37 E-value: 4.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILACA-----RQLYSP----QQFKSM------ 77
Cdd:PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKNSISHaYIFAGPRGTGKTTVarILAKSlncenRKGVEPcnecRACRSIdegtfm 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRgQILNFASTRTIFcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPAL 156
Cdd:PRK14962 87 dVIELDAASNRGIDEIR-KIRDAVGYRPME-GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 157 QSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVGYPLR 235
Cdd:PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLeQVWKFSEGKITLETVHEALGLIPI 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 19921076 236 QDIEQILKALLSGsSLEDSFKTVESAKYARG-------LALEDIITEL 276
Cdd:PRK14962 245 EVVRDYINAIFNG-DVKRVFTVLDDVYYSGKdyevliqQAIEDLVEDL 291
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
15-276 |
3.28e-21 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 94.14 E-value: 3.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 15 EKYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTS--TILACARQLYSPQQF---------KSM----- 77
Cdd:PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHaYIFSGPRGIGKTSiaKIFAKAINCLNPKDGdccnscsvcESIntnqs 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 --VLELNASDDRGIGIVRGQILNFASTRTIFcdTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPA 155
Cdd:PRK05896 88 vdIVELDAASNNGVDEIRNIIDNINYLPTTF--KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 156 LQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQStvMAFDTVNE---DNVYMCVGY 232
Cdd:PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ--LSTFKNSEidiEDINKTFGL 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 19921076 233 PLRQDIEQILKALLSGsSLEDSFKTVESAkYARGLALEDIITEL 276
Cdd:PRK05896 244 VDNNKKINLIELIQKN-DIEELRNLINEL-ESKGINFEAFCRDL 285
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
16-250 |
3.61e-21 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 94.04 E-value: 3.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILACA---RQLYSPQQFKSM------------ 77
Cdd:PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHaFLFTGARGVGKTSTarILAKAlncEQGLTAEPCNVCppcveitegrsv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRGQILN--FASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Cdd:PRK14965 89 dVFEIDGASNTGVDDIRELRENvkYLPSR----SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 155 ALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEdgkRALLTLA-KGD--MRKVLNVLQStVMAF--DTVNEDNVYMC 229
Cdd:PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISD---AALALVArKGDgsMRDSLSTLDQ-VLAFcgDAVGDDDVAEL 240
|
250 260
....*....|....*....|.
gi 19921076 230 VGYPLRQDIEQILKALLSGSS 250
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDT 261
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
8-226 |
9.63e-20 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 89.34 E-value: 9.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 8 AVRMpwvekyRPSGLDDLISHEEII---STITRFISRKQLPHLLFYGPPGTGKTS--TILAcarqlyspQQFKSMVLELN 82
Cdd:COG2256 16 AERM------RPRTLDEVVGQEHLLgpgKPLRRAIEAGRLSSMILWGPPGTGKTTlaRLIA--------NATDAEFVALS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 83 ASDD-----RGIgIVRGQILNFASTRTIfcdtfklIILDEADAMTNDAQNALRRIIEK--------YTDNVRFCVicnyl 149
Cdd:COG2256 82 AVTSgvkdiREV-IEEARERRAYGRRTI-------LFVDEIHRFNKAQQDALLPHVEDgtitligaTTENPSFEV----- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 150 skiIPALQSRCTRFRFAPLSQDQMMPRLEKIIE-------AEAVQITEDGKRALLTLAKGDMRKVLNVLQstvMAFDTVN 222
Cdd:COG2256 149 ---NSALLSRCRVFVLKPLSEEDLEQLLERALAdderglgGYKLELDDEALEALARLADGDARRALNALE---LAVLSAP 222
|
....
gi 19921076 223 EDNV 226
Cdd:COG2256 223 PDGV 226
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
35-202 |
6.22e-19 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 83.06 E-value: 6.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 35 ITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSPQQF--------KSMVLELNAS---------DDRGIGI--VRg 94
Cdd:TIGR00678 4 LKRALEKGRLAHaYLFTGPEGVGKELLALALAKALLCEQRGggepcgecHSCRLIEAGNhpdlhrlepEGQSIKVdqVR- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 95 QILNFASTRTIFcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMM 174
Cdd:TIGR00678 83 ELVEFLSRTPQE-SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALL 161
|
170 180 190
....*....|....*....|....*....|
gi 19921076 175 PRLEK--IIEAEAvqitedgkRALLTLAKG 202
Cdd:TIGR00678 162 QWLIRqgISEEAA--------ELLLALAGG 183
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
13-247 |
9.84e-19 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 87.18 E-value: 9.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILACA------RQLYSPQQF------KSM 77
Cdd:PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHaYLFSGPRGTGKTSVakIFANAlncshkTDLLEPCQEcienvnNSL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRGQILNFASTRTIfcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPAL 156
Cdd:PRK07133 88 dIIEMDAASNNGVDEIRELIENVKNLPTQ--SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 157 QSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVGYPLR 235
Cdd:PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAeQVSIFGNNKITLKNVEELFGLVSN 245
|
250
....*....|..
gi 19921076 236 QDIEQILKALLS 247
Cdd:PRK07133 246 ENLINLLNLLYS 257
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
16-252 |
1.06e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 86.38 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST------ILACA-----------RQLYSPQQFKSM 77
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQsILLVGASGVGKTTCariislCLNCSngptsdpcgtcHNCISIKNSNHP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRgQILNFASTRTIfCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPAL 156
Cdd:PRK14964 86 dVIEIDAASNTSVDDIK-VILENSCYLPI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 157 QSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVGYPLR 235
Cdd:PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLeQAAIYSNNKISEKSVRDLLGCVDK 243
|
250
....*....|....*..
gi 19921076 236 QDIEQILKALLSGSSLE 252
Cdd:PRK14964 244 HILEDLVEAILLGDAQS 260
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
47-168 |
1.07e-17 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 78.02 E-value: 1.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 47 LLFYGPPGTGKTSTILACARQLYSPqqfksmVLELNASDDRGIGI------VRgQILNFASTRTIfcdtfKLIILDEADA 120
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAP------FIEISGSELVSKYVgesekrLR-ELFEAAKKLAP-----CVIFIDEIDA 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19921076 121 M-----------TNDAQNALRRIIEKYT---DNVRFCVICNYLSKIIPALQSRCTRFRFAPL 168
Cdd:pfam00004 69 LagsrgsggdseSRRVVNQLLTELDGFTssnSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
168-230 |
1.14e-17 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 76.03 E-value: 1.14e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 19921076 168 LSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCV 230
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAGGGVITEEDVYEVA 63
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
15-320 |
1.36e-17 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 83.35 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 15 EKYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILA----CARQLYSP-----------QQFKS 76
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHaYLFSGPRGVGKTTTarLIAmavnCSGEDPKPcgecesclavrRGAHP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 77 MVLELNASDDRGIGIVRG--QILNFASTRTifcdTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Cdd:PRK14963 86 DVLEIDAASNNSVEDVRDlrEKVLLAPLRG----GRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 155 ALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPL 234
Cdd:PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 235 RQDIEQILKALLSG---SSLEDSFKTVESAKYARGLA---LEDIITELHLFV-----MRLELPMSVMNKLIVKLAQIEER 303
Cdd:PRK14963 242 QERLRGIAAALAQGdaaEALSGAAQLYRDGFAARTLVeglLEAFRAALYAELglgggPRLEGAEPRLLAAMTALDEQMER 321
|
330 340
....*....|....*....|.
gi 19921076 304 LAKG----CTEVAQTAALVAA 320
Cdd:PRK14963 322 FARRsdalSLELALLHALLAL 342
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
16-259 |
1.17e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 80.68 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILA----CarqLYSPQ--------------QF 74
Cdd:PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHaYLFSGPRGTGKTSAakIFAkavnC---LNPPDgepcneceickaitNG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 75 KSM-VLELNASDDRGIGIVRgQIL---NFASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS 150
Cdd:PRK05563 86 SLMdVIEIDAASNNGVDEIR-DIRdkvKYAPSE----AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 151 KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDgkrALLTLAK---GDMRKVLNVL-QstVMAF--DTVNED 224
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDE---ALRLIARaaeGGMRDALSILdQ--AISFgdGKVTYE 235
|
250 260 270
....*....|....*....|....*....|....*
gi 19921076 225 NVYMCVGYPLRQDIEQILKALLSGSSlEDSFKTVE 259
Cdd:PRK05563 236 DALEVTGSVSQEALDDLVDAIVEGDV-AKALKILE 269
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
16-293 |
1.25e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 80.91 E-value: 1.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQL--------------YSPQQFKSM--- 77
Cdd:PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHaYLLTGTRGVGKTTIARILAKSLncenaqhgepcgvcQSCTQIDAGryv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRGQILN--FASTrtifCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Cdd:PRK08691 89 dLLEIDAASNTGIDNIREVLENaqYAPT----AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 155 ALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVGYP 233
Cdd:PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLdQAIALGSGKVAENDVRQMIGAV 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 234 LRQDIEQILKALLSGSSLEDSFKTVESAkyARGLALEDIITELHLFVMRLELPMSVMNKL 293
Cdd:PRK08691 245 DKQYLYELLTGIINQDGAALLAKAQEMA--ACAVGFDNALGELAILLQQLALIQAVPSAL 302
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
1-226 |
1.45e-16 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 80.48 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 1 MSETSGP-AVRMpwvekyRPSGLDDLISHEEIIST---ITRFISRKQLPHLLFYGPPGTGKTStiLACARQLYSPQQFKS 76
Cdd:PRK13341 11 MSQSEAPlADRL------RPRTLEEFVGQDHILGEgrlLRRAIKADRVGSLILYGPPGVGKTT--LARIIANHTRAHFSS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 77 M------VLELNASDDRGIgivrgQILNFASTRTIfcdtfklIILDEADAMTNDAQNALRRIIEK--------YTDNVRF 142
Cdd:PRK13341 83 LnavlagVKDLRAEVDRAK-----ERLERHGKRTI-------LFIDEVHRFNKAQQDALLPWVENgtitligaTTENPYF 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 143 CVicnylskiIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAE-------AVQITEDGKRALLTLAKGDMRKVLNVLQSTV 215
Cdd:PRK13341 151 EV--------NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKergygdrKVDLEPEAEKHLVDVANGDARSLLNALELAV 222
|
250
....*....|.
gi 19921076 216 MAFDTvNEDNV 226
Cdd:PRK13341 223 ESTPP-DEDGL 232
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
16-306 |
2.56e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 76.00 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPHL-LFYGPPGTGKTsTIlacARQLYspqqfKSMVLELNASDD------RG 88
Cdd:PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAwLLSGTRGVGKT-TI---ARLLA-----KSLNCQNGITSNpcrkciIC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 89 IGIVRGQILNF----ASTRTIFCDT---------------FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYL 149
Cdd:PRK14961 80 KEIEKGLCLDLieidAASRTKVEEMreildniyyspsksrFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 150 SKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYM 228
Cdd:PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLeHAINLGKGNINIKNVTD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 229 CVGYPLRQDIEQILKALLSgsslEDSFKTVESAKYARGLALE------DIITELHLFVMRLELPMsVMNKLIVKlaQIEE 302
Cdd:PRK14961 240 MLGLLNEKQSFLLTDALLK----KDSKKTMLLLNKISSIGIEweniliEMLRFLHHISMSQSFPK-IWNTIFIK--NYKN 312
|
....
gi 19921076 303 RLAK 306
Cdd:PRK14961 313 QIQK 316
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
16-277 |
2.61e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 76.33 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKT--STILA----------------CARQLYSPQ-QFK 75
Cdd:PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHaYLFTGTRGVGKTtlARILAkslncetgvtatpcgvCSACLEIDSgRFV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 76 SMvLELNASDDRGIGIVRGQILN--FASTRTifcdTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKII 153
Cdd:PRK14969 89 DL-IEVDAASNTQVDAMRELLDNaqYAPTRG----RFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 154 PALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVGy 232
Cdd:PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLdQAIAYGGGTVNESEVRAMLG- 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 19921076 233 PLRQD-IEQILKALLS--GSSLEDSFKTVESAKYARGLALEDIITELH 277
Cdd:PRK14969 243 AIDQDyLFALLEALLAqdGAALLAIADAMEERSLSFDAALQDLAALLH 290
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
24-247 |
5.27e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 74.30 E-value: 5.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 24 DLISHEEIISTITRFISRKQLPHL-LFYGPPGTGKTstILA--CARQLYSPQQFKSMV--LELNASDDRGIGI--VRgQI 96
Cdd:PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAhIIVGEDGIGKS--LLAkeIALKILGKSQQREYVdiIEFKPINKKSIGVddIR-NI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 97 LNFASTRTIFCDTfKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMmpr 176
Cdd:PRK05564 82 IEEVNKKPYEGDK-KVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI--- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 177 lEKIIEAEAVQITEDGKRALLTLAKGDMRKV---------LNVLQSTVMAFDTVNEDNVYMCVGYP-----LRQDIEQIL 242
Cdd:PRK05564 158 -EKFISYKYNDIKEEEKKSAIAFSDGIPGKVekfieddslKNIRNMSLEILKDIKKSNINILLKYEnflikYKENWEEIL 236
|
....*
gi 19921076 243 KALLS 247
Cdd:PRK05564 237 TCILS 241
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
16-260 |
2.10e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 73.83 E-value: 2.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILA----------------CARQLYSPQQFKS 76
Cdd:PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHaYIFFGPRGVGKTTIarILAkrlncenpignepcneCTSCLEITKGISS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 77 MVLELNASDDRGIGIVRGQILN--FAStrtiFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Cdd:PRK14956 91 DVLEIDAASNRGIENIRELRDNvkFAP----MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 155 ALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGkraLLTLAK---GDMRKVLNVLQSTVMAFDT-VNEDNVYMCV 230
Cdd:PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEG---LFWIAKkgdGSVRDMLSFMEQAIVFTDSkLTGVKIRKMI 243
|
250 260 270
....*....|....*....|....*....|
gi 19921076 231 GYPLRQDIEQILKALLSGSSLEDSFKTVES 260
Cdd:PRK14956 244 GYHGIEFLTSFIKSLIDPDNHSKSLEILES 273
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
11-211 |
7.15e-14 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 72.22 E-value: 7.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQL-------------------YS 70
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHaYLFSGPRGCGKTSSARILARSLncaqgptatpcgvcescvaLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 71 PQQFKSM-VLELNASDDRGIGIVRGqilnfASTRTIFC---DTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVIC 146
Cdd:PRK14952 81 PNGPGSIdVVELDAASHGGVDDTRE-----LRDRAFYApaqSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19921076 147 NYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQItEDGKRALLTLA-KGDMRKVLNVL 211
Cdd:PRK14952 156 TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAgGGSPRDTLSVL 220
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
16-300 |
9.29e-14 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 72.00 E-value: 9.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDrgiGIVRG 94
Cdd:PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGRLHHaYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK---AVNEG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 95 QILNF----ASTRTIFCDT---------------FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPA 155
Cdd:PRK14960 85 RFIDLieidAASRTKVEDTrelldnvpyaptqgrFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 156 LQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCVG--- 231
Cdd:PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTdQAIAYGQGAVHHQDVKEMLGlid 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19921076 232 ----YPLRQDIEQILKALLSGSSLEDSFKTVESAkyargLALEDIITELHLFVMRLELP-MSV-----MNKLIVKLAQI 300
Cdd:PRK14960 245 rtiiYDLILAVHQNQREKVSQLLLQFRYQALDVS-----LVLDQLISTLHELALLQYLPeLGLkyseeINAKILQLSKL 318
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
16-215 |
1.12e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 71.06 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSP------QQFKSMVLELNASDDRG 88
Cdd:PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENNHLAQaLLFCGPRGVGKTTCARILARKINQPgyddpnEDFSFNIFELDAASNNS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 89 IGIVRGQI--LNFASTrtifCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFA 166
Cdd:PRK14970 90 VDDIRNLIdqVRIPPQ----TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFK 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 19921076 167 PLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTV 215
Cdd:PRK14970 166 RITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVV 214
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
16-205 |
1.15e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 71.34 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTS--TILACARQLYSPQQ----------------FKS 76
Cdd:PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNRAAHaYLFSGIRGTGKTTlaRIFAKALNCQNPTEdqepcnqcasckeissGTS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 77 M-VLELNASDDRGIGIVRgQI---LNFASTRTifcdTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKI 152
Cdd:PRK06305 90 LdVLEIDGASHRGIEDIR-QInetVLFTPSKS----RYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 19921076 153 IPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMR 205
Cdd:PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLR 217
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
28-169 |
5.23e-13 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 66.08 E-value: 5.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 28 HEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSPQQFKSM----------VLELN-------ASDDRGI 89
Cdd:pfam13177 2 QPEAIQLLQNSLENGRLSHaYLFSGPEGVGKLELALAFAKALFCEEPGDDLpcgqcrscrrIESGNhpdlviiEPEGQSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 90 GI--VRgQILNFASTRTIFcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAP 167
Cdd:pfam13177 82 KIdqIR-ELQKEFSKSPYE-GKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
..
gi 19921076 168 LS 169
Cdd:pfam13177 160 LS 161
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
16-223 |
9.31e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 68.82 E-value: 9.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTI------LACARQLYSPQQFKSM----------- 77
Cdd:PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMDRVGHgYIFSGLRGVGKTTAArvfakaVNCQRMIDDPVYLQEVtepcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 ---------VLELNASDDRGIGIVRGQILN--FASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVIC 146
Cdd:PRK14954 89 dfdagtslnISEFDAASNNSVDDIRQLRENvrYGPQK----GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19921076 147 NYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQStVMAFDTVNE 223
Cdd:PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQ-VIAFSVGSE 240
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
12-60 |
1.25e-12 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 68.71 E-value: 1.25e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 19921076 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTST 60
Cdd:PRK04132 8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
12-212 |
1.51e-12 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 68.44 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 12 PWVEKYRPSGLDDLISHEEIISTI-----TRFISRKQLPHLLFYGPPGTGKTSTILACARQL-YSPQQFKSMVLELNASD 85
Cdd:TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVetwlkAQVLENAPKRILLITGPSGCGKSTTIKILSKELgIQVQEWSNPTLPDFQKN 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 86 DRGIGIVRGQ-ILNFASTRTIFCDTF------------------KLIILDEADAMTNDAQNALRRIIE-KYTDNVRF-CV 144
Cdd:TIGR00602 153 DHKVTLSLEScFSNFQSQIEVFSEFLlratnklqmlgddlmtdkKIILVEDLPNQFYRDTRALHEILRwKYVSIGRCpLV 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 145 IC---------NYLSKIIPALQS---------RCTRFRFAPLSQDQMMPRLEKIIEAEAVQITED---GKRALLTL---- 199
Cdd:TIGR00602 233 FIiteslegdnNQRRLLFPAETImnkeileepRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKikvPKKTSVELlcqg 312
|
250
....*....|...
gi 19921076 200 AKGDMRKVLNVLQ 212
Cdd:TIGR00602 313 CSGDIRSAINSLQ 325
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
16-247 |
2.79e-12 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 67.30 E-value: 2.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITR-FISRKQLPHLLFYGPPGTGKTST--ILAcarqlyspqqfKSM--------------- 77
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNaLISNRIAPAYLFTGPRGTGKTSSarILA-----------KSLnclnsdkptpepcgk 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 --------------VLELNASDDRGIG-----IVRGQilnFAST--RtifcdtFKLIILDEADAMTNDAQNALRRIIEKY 136
Cdd:PRK14948 78 celcraiaagnaldVIEIDAASNTGVDnirelIERAQ---FAPVqaR------WKVYVIDECHMLSTAAFNALLKTLEEP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 137 TDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDgkrALLTLAK---GDMRKV------ 207
Cdd:PRK14948 149 PPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPE---ALTLVAQrsqGGLRDAeslldq 225
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 19921076 208 LNVLQSTVMAfdtvneDNVYMCVGYPLRQDIEQILKALLS 247
Cdd:PRK14948 226 LSLLPGPITP------EAVWDLLGAVPEQDLLNLLKALAS 259
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
16-289 |
2.83e-12 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 67.59 E-value: 2.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKT--STILACARQLYSPQQFKSMV-------------- 78
Cdd:PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHaYLFTGTRGVGKTtlSRILAKSLNCTGADGEGGITaqpcgqcracteid 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 79 -------LELNASDDRGIGIVrGQILNfastRTIFCDT---FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNY 148
Cdd:PRK12323 89 agrfvdyIEMDAASNRGVDEM-AQLLD----KAVYAPTagrFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 149 LSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVY 227
Cdd:PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTdQAIAYSAGNVSEEAVR 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19921076 228 MCVGYPLRQDIEQILKALLSGSSLedSFKTVESAKYARGL----ALEDIITELHLFVMRLELPMSV 289
Cdd:PRK12323 244 GMLGAIDQSYLVRLLDALAAEDGA--ALLAIADEMAGRSLsfagALQDLASLLQKIALAQVVPAAV 307
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
16-279 |
2.87e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 67.37 E-value: 2.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSPQQFKSM----------------- 77
Cdd:PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHaYLFSGLRGSGKTSSARIFARALVCEQGPSSTpcdtciqcqsalenrhi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRGQILNF----ASTRtifcdtFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKI 152
Cdd:PRK08451 87 dIIEMDAASNRGIDDIRELIEQTkykpSMAR------FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 153 IPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDgkrALLTLAK---GDMRKVLNVL-QSTVMAFDTVNEDNVYM 228
Cdd:PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPE---ALEILARsgnGSLRDTLTLLdQAIIYCKNAITESKVAD 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 19921076 229 CVGYPLRQDIEQILKALLSGssleDSFKTVESAKYARGLALEDIITELHLF 279
Cdd:PRK08451 238 MLGLLDPSKLEDFFQAILNQ----DKEKLFELLKELEDYEAEMVLDEMMLF 284
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
12-211 |
1.85e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 65.09 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 12 PWVEKYRPSGLDDLISHEEIISTITRFISRKQL-PHLLFYGPPGTGKTSTILACARQL---YSP--------QQFKSM-- 77
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVaPAYLFSGTRGVGKTTIARIFAKALnceTAPtgepcntcEQCRKVtq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -----VLELNASDDRGIGIVR--GQILNFASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS 150
Cdd:PRK14959 85 gmhvdVVEIDGASNRGIDDAKrlKEAIGYAPME----GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19921076 151 KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL 211
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLL 221
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
16-192 |
2.67e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 64.41 E-value: 2.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSPQQFKSM----------------- 77
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANaYIFSGPRGVGKTSSARAFARCLNCVNGPTPMpcgecsscksidndnsl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRgQI---LNF--ASTRtifcdtFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSK 151
Cdd:PRK06647 89 dVIEIDGASNTSVQDVR-QIkeeIMFppASSR------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 19921076 152 IIPALQSRCTRFRFAPLSqdqmmprLEKIIEAEAVQITEDG 192
Cdd:PRK06647 162 LPATIKSRCQHFNFRLLS-------LEKIYNMLKKVCLEDQ 195
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
16-224 |
5.58e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 62.99 E-value: 5.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTI------LACARQLYSPQQFKSM----------- 77
Cdd:PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGRVGHgYIFSGLRGVGKTTAArvfakaVNCQRMIDDADYLQEVtepcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 ---------VLELNASDDRGIGIVRG--QILNFASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVIC 146
Cdd:PRK14955 89 dfdagtslnISEFDAASNNSVDDIRLlrENVRYGPQK----GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19921076 147 NYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQStVMAFDTVNED 224
Cdd:PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQ-VIAFSVESEG 241
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
19-212 |
1.99e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 61.21 E-value: 1.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 19 PSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTSTILACARQLYSPQQFKSM-------------------- 77
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHaLLFEGPEGIGKATLAFHLANHILSHPDPAEApetladpdpaspvwrqiaqg 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 ----VLELNASDDRGIGIVRGQIL--------NFAStRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVI 145
Cdd:PRK09112 99 ahpnLLHITRPFDEKTGKFKTAITvdeirrvgHFLS-QTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19921076 146 CNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAvqITEDGKRALLTLAKGDMRKVLNVLQ 212
Cdd:PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLN 242
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
11-301 |
8.32e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 59.87 E-value: 8.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILA----CARQLYSPQQFKSM------ 77
Cdd:PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGgYLLTGIRGVGKTTSarIIAkavnCSALITENTTIKTCeqctnc 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 ----------VLELNASDDRGIGIVRgQILNFASTRTIFcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICN 147
Cdd:PRK06645 89 isfnnhnhpdIIEIDAASKTSVDDIR-RIIESAEYKPLQ-GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 148 YLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAfdtVNEDNV 226
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILdQAASMS---AKSDNI 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19921076 227 YMcvgyplRQDIEQILkALLSGSSLEDSFKTVESAKYARGLaleDIITELHLFVMRLELPMSVMNKLIVKLAQIE 301
Cdd:PRK06645 244 IS------PQVINQML-GLVDSSVIIEFVEYIIHRETEKAI---NLINKLYGSSVNLEIFIESVSDFIAYLNKVK 308
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
41-202 |
1.12e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 58.56 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 41 RKQLPH-LLFYGPPGTGKTS------TILACARQ--LYSPQQFKSMVLELNASD-----------DRGIGI--VRgQILN 98
Cdd:PRK05707 18 RGRHPHaYLLHGPAGIGKRAlaerlaAALLCEAPqgGGACGSCKGCQLLRAGSHpdnfvlepeeaDKTIKVdqVR-ELVS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 99 FAsTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLE 178
Cdd:PRK05707 97 FV-VQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQ 175
|
170 180
....*....|....*....|....*...
gi 19921076 179 KII----EAEAVQitedgkraLLTLAKG 202
Cdd:PRK05707 176 QALpesdERERIE--------LLTLAGG 195
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
16-277 |
1.43e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 58.96 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKT--STILACARQLYSPQ-------------------- 72
Cdd:PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHaYLFTGTRGVGKTtvSRILAKSLNCQGPDgqggitatpcgvcqacrdid 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 73 --QFKSMVlELNASDDRGIGIVRgQILNFASTRTIfCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS 150
Cdd:PRK14951 89 sgRFVDYT-ELDAASNRGVDEVQ-QLLEQAVYKPV-QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 151 KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNvLQSTVMAF--DTVNEDNVYM 228
Cdd:PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS-LTDQAIAFgsGQLQEAAVRQ 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 19921076 229 CVGYPLRQDIEQILKALLSGssleDSFKTVESAK--YARGL----ALEDIITELH 277
Cdd:PRK14951 245 MLGSVDRSHVFRLIDALAQG----DGRTVVETADelRLNGLsaasTLEEMAAVLQ 295
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
22-226 |
2.06e-09 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 57.20 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 22 LDDLISHEEIISTITRFI---SRKQLP---------HLLFYGPPGTGKTSTILACARQLYSPqqfksmVLELNAsdDRGI 89
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIkelRRRENLrkfglwpprKILFYGPPGTGKTMLAEALAGELKLP------LLTVRL--DSLI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 90 GIVRG-------QILNFA-STRTIfcdtfklIILDEADAMTND--AQNA---LRRI-------IEKYTDNVrfCVIC--N 147
Cdd:COG1223 73 GSYLGetarnlrKLFDFArRAPCV-------IFFDEFDAIAKDrgDQNDvgeVKRVvnallqeLDGLPSGS--VVIAatN 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 148 YLSKIIPALQSRC-TRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRaLLTLAKG----DMRKVL-NVLQSTVMA-FDT 220
Cdd:COG1223 144 HPELLDSALWRRFdEVIEFPLPDKEERKEILELNLKKFPLPFELDLKK-LAKKLEGlsgaDIEKVLkTALKKAILEdREK 222
|
....*.
gi 19921076 221 VNEDNV 226
Cdd:COG1223 223 VTKEDL 228
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
92-202 |
5.21e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 56.96 E-value: 5.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 92 VRGQILNFASTRTIfcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQD 171
Cdd:PRK07471 126 VRELISFFGLTAAE--GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPE 203
|
90 100 110
....*....|....*....|....*....|.
gi 19921076 172 QMmprlEKIIEAEAVQITEDGKRALLTLAKG 202
Cdd:PRK07471 204 DV----IDALAAAGPDLPDDPRAALAALAEG 230
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
23-202 |
5.35e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 56.45 E-value: 5.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 23 DDLISHEEIISTITRFISRKQL-PHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLE--------------------- 80
Cdd:PRK07399 4 ANLIGQPLAIELLTAAIKQNRIaPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRrleegnhpdllwveptyqhqg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 81 --LNASD-------DRGIGIVR----GQILNFASTRTIFCDTfKLIILDEADAMTNDAQNALRRIIEKyTDNVRFCVICN 147
Cdd:PRK07399 84 klITASEaeeaglkRKAPPQIRleqiREIKRFLSRPPLEAPR-KVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 19921076 148 YLSKIIPALQSRCTRFRFAPLSQDQMmprlEKIIEA-EAVQITEDGKRALLTLAKG 202
Cdd:PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQL----EQVLKRlGDEEILNINFPELLALAQG 213
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
16-215 |
6.48e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 57.09 E-value: 6.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTStilaCARQL----------------------YSPQ 72
Cdd:PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHaYLFCGPRGVGKTT----CARIFaktincqnltadgeacnecescVAFN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 73 QFKSM-VLELNASDDRGIGIVRGQILNFASTRTIfcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSK 151
Cdd:PRK14971 86 EQRSYnIHELDAASNNSVDDIRNLIEQVRIPPQI--GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19921076 152 IIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTV 215
Cdd:PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVV 227
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
16-277 |
8.58e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.78 E-value: 8.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKT--STILACA------------------RQLySPQQF 74
Cdd:PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHaYLFTGTRGVGKTtlSRIFAKAlncetgvtsqpcgvcracREI-DEGRF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 75 KSMVlELNASDDRGIGIVRGQIlnfasTRTIFCDT---FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSK 151
Cdd:PRK07003 88 VDYV-EMDAASNRGVDEMAALL-----ERAVYAPVdarFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 152 IIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVL-QSTVMAFDTVNEDNVYMCV 230
Cdd:PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTdQAIAYSANEVTETAVSGML 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19921076 231 G-----YPLRqdieqILKALLSGS-----SLED-------SFKTvesakyarglALEDIITELH 277
Cdd:PRK07003 242 GaldqtYMVR-----LLDALAAGDgpeilAVADemalrslSFST----------ALQDLASLLH 290
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
46-165 |
1.27e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 46 HLLFYGPPGTGKTSTILACARQLYsPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTF------------KLI 113
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELG-PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLrlalalarklkpDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 114 ILDEADAMTNDAQNALRR--------IIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRF 165
Cdd:smart00382 83 ILDEITSLLDAEQEALLLlleelrllLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
18-63 |
7.01e-08 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 53.21 E-value: 7.01e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 19921076 18 RPSGLDDLISHEEIISTITRFI--SRKQ---LPHLLFYGPPGTGKTS--TILA 63
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIeaAKKRgeaLDHVLLYGPPGLGKTTlaNIIA 72
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
14-182 |
1.99e-07 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 52.22 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 14 VEKYRPSGLDDLISHEEIISTITRFI----------SRKQLP---HLLFYGPPGTGKTSTILACARQLYSPqqfksmVLE 80
Cdd:COG0464 148 LLELREAILDDLGGLEEVKEELRELValplkrpelrEEYGLPpprGLLLYGPPGTGKTLLARALAGELGLP------LIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 81 LNASD--DRGIG----IVRgQILNFAStRTIFCdtfkLIILDEADAM----TNDAQNALRRI-------IEKYTDNVrfC 143
Cdd:COG0464 222 VDLSDlvSKYVGetekNLR-EVFDKAR-GLAPC----VLFIDEADALagkrGEVGDGVGRRVvntllteMEELRSDV--V 293
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 19921076 144 VIC--NYLSKIIPALQSRCTR-FRFAPLSQDQmmprLEKIIE 182
Cdd:COG0464 294 VIAatNRPDLLDPALLRRFDEiIFFPLPDAEE----RLEIFR 331
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
110-174 |
3.31e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 50.96 E-value: 3.31e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19921076 110 FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMM 174
Cdd:PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAM 173
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
16-215 |
3.36e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 51.65 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKT--STILA----CARQLYS-------------PQQFK 75
Cdd:PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHaYLFTGTRGVGKTtiSRILAkclnCEKGVSAnpcndcencreidEGRFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 76 SMvLELNASDDRGIGIVRGQILN--FASTRtifcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKII 153
Cdd:PRK14958 89 DL-FEVDAASRTKVEDTRELLDNipYAPTK----GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19921076 154 PALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTV 215
Cdd:PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSI 225
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
168-230 |
5.07e-07 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 46.31 E-value: 5.07e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19921076 168 LSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDT--VNEDNVYMCV 230
Cdd:cd18133 1 LDQEQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGDDgkISLDRVYQAV 65
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
16-215 |
5.50e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 50.85 E-value: 5.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTS------TILACARQLYSPQQFKSM----------- 77
Cdd:PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQKVHHaYLFTGTRGVGKTTlgrllaKCLNCKTGVTAEPCNKCEncvainnnsfi 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 -VLELNASDDRGIGIVRGQILNFASTRTIfcDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPAL 156
Cdd:PRK14957 89 dLIEIDAASRTGVEETKEILDNIQYMPSQ--GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 19921076 157 QSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTV 215
Cdd:PRK14957 167 LSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
16-226 |
6.84e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 50.67 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 16 KYRPSGLDDLISHEEIISTITRFISRKQLPH-LLFYGPPGTGKTST--ILA----CARQLYSPQQFKSM----------- 77
Cdd:PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETGRIAQaFMLTGVRGVGKTTTarILAralnYEGPDGDGGPTIDLcgvgehcqaim 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 78 ------VLELNASDDRGIGIVRgQILNF-----ASTRtifcdtFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVIC 146
Cdd:PRK09111 97 egrhvdVLEMDAASHTGVDDIR-EIIESvryrpVSAR------YKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 147 NYLSKI-IPALqSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDG----KRAlltlAKGDMRKVLNVL-QSTVMAFDT 220
Cdd:PRK09111 170 TEIRKVpVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEAlaliARA----AEGSVRDGLSLLdQAIAHGAGE 244
|
....*.
gi 19921076 221 VNEDNV 226
Cdd:PRK09111 245 VTAEAV 250
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
48-226 |
1.32e-06 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 48.79 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 48 LFYGPPGTGKTSTILACARQ-----------LYSPQQF-KSMVLELNASDDRG-IGIVRGQILNFAStrtifcDTFKLII 114
Cdd:COG2842 54 VVYGESGVGKTTAAREYANRnpnviyvtaspSWTSKELlEELAEELGIPAPPGtIADLRDRILERLA------GTGRLLI 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 115 LDEADAMTNDAQNALRRIIEKYtdNVRFCVICN--YLSKI--IPALQSRCT-RFRFAPLSQDQmmprLEKIIEAeAVQIT 189
Cdd:COG2842 128 IDEADHLKPKALEELRDIHDET--GVGVVLIGMerLPAKLkrYEQLYSRIGfWVEFKPLSLED----VRALAEA-WGELT 200
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 19921076 190 EDGKRALLT-LAKGDMRKVLNVLQSTVMA-----FDTVNEDNV 226
Cdd:COG2842 201 DPDLLELLHrITRGNLRRLDRTLRLAARAakrngLTKITLDHV 243
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
47-163 |
1.49e-06 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 47.28 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 47 LLFYGPPGTGKTSTILACARQLYSPqqFKSMVLELNASDDRGIGIVR-GQILNFASTRtifcdTFKLIILDEADAM---- 121
Cdd:cd19481 29 ILLYGPPGTGKTLLAKALAGELGLP--LIVVKLSSLLSKYVGESEKNlRKIFERARRL-----APCILFIDEIDAIgrkr 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 19921076 122 --------TNDAQNALRRIIEKYTDNVRFCVIC--NYLSKIIPALQsRCTRF 163
Cdd:cd19481 102 dssgesgeLRRVLNQLLTELDGVNSRSKVLVIAatNRPDLLDPALL-RPGRF 152
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
94-248 |
2.62e-06 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 48.33 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 94 GQILNFASTRTIFCDTfKLIILDEADAMT--NDAQNALRRIIEKYTDNVRFCVICNYL---SKIIPALQSRCTRFRFAPL 168
Cdd:COG1466 48 AELLDEAQTLSLFGER-RLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 169 SQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQ---STVMAFDTVNEDNVYMCVGYPLRQDIEQILKAL 245
Cdd:COG1466 127 KERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGDLLALAQELEklaLYAGDGGTITLEDVEALVGDSAEFNVFDLADAL 206
|
...
gi 19921076 246 LSG 248
Cdd:COG1466 207 LAG 209
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
12-73 |
3.58e-06 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 46.88 E-value: 3.58e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19921076 12 PWVEKYRPSGLDDLISHEEIISTI-----TRFISRKQLPHLLFYGPPGTGKTSTILACARQL-YSPQQ 73
Cdd:pfam03215 8 QWYEKYKPNCLEQLAVHKRKIKDVqewldAMFLENAKHRILLISGPSGCGKSTVIKELSKELgPKYRE 75
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
18-63 |
4.18e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 45.95 E-value: 4.18e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 19921076 18 RPSGLDDLISHEEIISTITRFI----SRKQ-LPHLLFYGPPGTGKT--STILA 63
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIeaakQRGEaLDHVLLYGPPGLGKTtlANIIA 54
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
30-157 |
7.93e-06 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 46.46 E-value: 7.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 30 EIISTITRfiSRKQLPHLLFYGPPGTGKTSTILACARQLYSpQQFKSMVLELNASddrgigivrgqilNFAstrtifCDt 109
Cdd:cd18038 8 LAVRNIVT--GTSRPPPYIIFGPPGTGKTVTLVEAILQVLR-QPPEARILVCAPS-------------NSA------AD- 64
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 19921076 110 fkLIILDEADAMTNDAQ----NALRRIIEKYTDNVR-FCVICNYLSKIIPALQ 157
Cdd:cd18038 65 --LLAERLLNALVTKREilrlNAPSRDRASVPPELLpYCNSKAEGTFRLPSLE 115
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
41-208 |
1.28e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 46.29 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 41 RKQLPH-LLFYGPPGTGKTSTILACARQLY--SPQ---------------------QFKSMVLEL-------------NA 83
Cdd:PRK06964 17 RARLPHaLLLHGQAGIGKLDFAQHLAQGLLceTPQpdgepcgtcaacnwfaqgnhpDYRIVRPEAlaaeapgaadeakEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 84 SDDRG------------IGIVRGQI--LNFASTRTifcdTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYL 149
Cdd:PRK06964 97 DADEGgkktkapskeikIEQVRALLdfCGVGTHRG----GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARI 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 19921076 150 SKIIPALQSRCTRFRFAPLSQDQMMPRLEK--IIEAEAvQITEDGKRAL--LTLAKGDMRKVL 208
Cdd:PRK06964 173 DRLLPTILSRCRQFPMTVPAPEAAAAWLAAqgVADADA-LLAEAGGAPLaaLALASDENRPLR 234
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
18-63 |
1.47e-05 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 46.23 E-value: 1.47e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 19921076 18 RPSGLDDLISHEEIISTITRFIS----RKQ-LPHLLFYGPPGTGKT--STILA 63
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEaakkRGEaLDHVLLYGPPGLGKTtlAHIIA 75
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
111-210 |
2.24e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 45.63 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 111 KLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQ--- 187
Cdd:PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGVAEPEErla 194
|
90 100 110
....*....|....*....|....*....|....*.
gi 19921076 188 --------ITEDGKRALL-----TLAKGDMRKVLNV 210
Cdd:PRK08699 195 fhsgaplfDEEPELRALRiklldILAEPRLLKILDY 230
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
111-182 |
2.92e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 45.10 E-value: 2.92e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 19921076 111 KLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMmprLEKIIE 182
Cdd:PRK07132 92 KILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKI---LAKLLS 160
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
46-153 |
3.73e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 42.71 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 46 HLLFYGPPGTGKT---------------STILACARQLYSPQQFKSMV---LELNASDDRGIGIVRGQILNFASTRtifc 107
Cdd:pfam13401 7 ILVLTGESGTGKTtllrrlleqlpevrdSVVFVDLPSGTSPKDLLRALlraLGLPLSGRLSKEELLAALQQLLLAL---- 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 19921076 108 DTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVI-CNYLSKII 153
Cdd:pfam13401 83 AVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILVgTPELRELL 129
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
22-64 |
6.06e-05 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 44.21 E-value: 6.06e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 19921076 22 LDDLISHEEIISTITRFIS----RK-QLPHLLFYGPPGTGKTS--TILAC 64
Cdd:TIGR00635 3 LAEFIGQEKVKEQLQLFIEaakmRQeALDHLLLYGPPGLGKTTlaHIIAN 52
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
46-200 |
2.41e-04 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 42.91 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 46 HLLFYGPPGTGKTSTILACARQLYSPQQF-KSMVLELNASDdrGIGIVRGQ-------ILNFASTRTIFCDTFKLIIlDE 117
Cdd:TIGR03922 314 HMLFAGPPGTGKTTIARVVAKIYCGLGVLrKPLVREVSRAD--LIGQYIGEseaktneIIDSALGGVLFLDEAYTLV-ET 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 118 ADAMTND----AQNALRRIIEKYTDnvRFCVICNYLSKII-------PALQSRCTR-FRFAPLSQDQMMPRLEKIIEAEA 185
Cdd:TIGR03922 391 GYGQKDPfgleAIDTLLARMENDRD--RLVVIGAGYRKDLdkflevnEGLRSRFTRvIEFPSYSPDELVEIARRMATERD 468
|
170
....*....|....*
gi 19921076 186 VQITEDGKRALLTLA 200
Cdd:TIGR03922 469 SVLDDAAADALLEAA 483
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
168-225 |
4.84e-04 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 38.00 E-value: 4.84e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19921076 168 LSQDQMMPRLEKIIEAE------AVQITEDGKRALLTLAKGDMRKVLNVLQstvMAFDTVNEDN 225
Cdd:cd18139 1 LSEEDLEKLLKRALEDKerggdrKVTIDDEALELLAEAADGDARSALNLLE---LAVLSAEEDG 61
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
6-68 |
5.60e-04 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 41.15 E-value: 5.60e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19921076 6 GPAVRMPWVEKYRPS-------GLDDLIshEEIISTITRFISRKQL--------PH-LLFYGPPGTGKTSTILACARQL 68
Cdd:COG1222 60 LGTPRGTAVPAESPDvtfddigGLDEQI--EEIREAVELPLKNPELfrkygiepPKgVLLYGPPGTGKTLLAKAVAGEL 136
|
|
| AAA_7 |
pfam12775 |
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ... |
28-83 |
8.02e-04 |
|
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).
Pssm-ID: 463698 [Multi-domain] Cd Length: 179 Bit Score: 39.68 E-value: 8.02e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 19921076 28 HEEIISTI----TRFISRKQLP---HLLFYGPPGTGKTSTILACARQLySPQQFKSMVLELNA 83
Cdd:pfam12775 8 SEILVPTVdtvrYTYLLDLLLKngkPVLLVGPTGTGKTVIIQNLLRKL-DKEKYLPLFINFSA 69
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
15-201 |
1.14e-03 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 40.94 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 15 EKYRPSGLDDLISHEEIISTItrfisRKQLPHLLFYGPPGTGKTSTI----LACARQLYSPQQFKSMVLELN--ASDDRG 88
Cdd:COG5635 156 DLYVPLNLLERIESLKRLELL-----EAKKKRLLILGEPGSGKTTLLrylaLELAERYLDAEDPIPILIELRdlAEEASL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 89 IGIVRGQILNFAS-TRTIFCDTFK----LIILD-----EADAMTNDAQNALRRIIEKYTDNvRFCVICNYLSKIIPALQs 158
Cdd:COG5635 231 EDLLAEALEKRGGePEDALERLLRngrlLLLLDgldevPDEADRDEVLNQLRRFLERYPKA-RVIITSRPEGYDSSELE- 308
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 19921076 159 RCTRFRFAPLSQDQMMPRLEKIIEAEAVQITE-----DGKRALLTLAK 201
Cdd:COG5635 309 GFEVLELAPLSDEQIEEFLKKWFEATERKAERllealEENPELRELAR 356
|
|
| RecA-like_BCS1 |
cd19510 |
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of ... |
31-120 |
1.19e-03 |
|
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of mitochondrial respiratory chain complex III and plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex. RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410918 [Multi-domain] Cd Length: 153 Bit Score: 38.87 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 31 IISTITRFISRKQ------LPH---LLFYGPPGTGKTSTILACARQLyspqQFKSMVLEL---NASDDRgigivRGQILN 98
Cdd:cd19510 1 IIDDLKDFIKNEDwyndrgIPYrrgYLLYGPPGTGKSSFIAALAGEL----DYDICDLNLsevVLTDDR-----LNHLLN 71
|
90 100
....*....|....*....|..
gi 19921076 99 FASTRTIfcdtfklIILDEADA 120
Cdd:cd19510 72 TAPKQSI-------ILLEDIDA 86
|
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
29-118 |
1.68e-03 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 40.01 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 29 EEIISTITRFISRKQlPHLLFYGPPGTGKTSTILACARQLYSPQ-------------QFKSMVLELNASDDRGIGI--VR 93
Cdd:COG1061 86 QEALEALLAALERGG-GRGLVVAPTGTGKTVLALALAAELLRGKrvlvlvprrelleQWAEELRRFLGDPLAGGGKkdSD 164
|
90 100 110
....*....|....*....|....*....|...
gi 19921076 94 GQILnFASTRTI--------FCDTFKLIILDEA 118
Cdd:COG1061 165 APIT-VATYQSLarrahldeLGDRFGLVIIDEA 196
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
51-118 |
2.18e-03 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 37.60 E-value: 2.18e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19921076 51 GPPGTGKTSTILACARQLyspqqfksmvleLNASDDRGIGIVrgqilnfAST-RTIfcDTFKLIILDEA 118
Cdd:cd17934 6 GPPGTGKTTTIAAIVLQL------------LKGLRGKRVLVT-------AQSnVAV--DNVDVVIIDEA 53
|
|
| AAA_11 |
pfam13086 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
48-73 |
2.26e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
Pssm-ID: 404072 [Multi-domain] Cd Length: 248 Bit Score: 38.86 E-value: 2.26e-03
10 20
....*....|....*....|....*.
gi 19921076 48 LFYGPPGTGKTSTILACARQLYSPQQ 73
Cdd:pfam13086 17 LIQGPPGTGKTTTIVELIRQLLSYPA 42
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
47-68 |
3.60e-03 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 37.66 E-value: 3.60e-03
10 20
....*....|....*....|..
gi 19921076 47 LLFYGPPGTGKTSTILACARQL 68
Cdd:cd19503 37 VLLHGPPGTGKTLLARAVANEA 58
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
47-171 |
5.25e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 36.41 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 47 LLFYGPPGTGKTSTILACARQLYSPQQFksmvLELNASDDRGIGIVRGQILNFAstRTIFCDTFKLIILDEAdAMTNDAQ 126
Cdd:pfam13173 5 LVITGPRQVGKTTLLLQLIKELLPPENI----LYINLDDPRLLKLADFELLELF--LELLYPGKTYLFLDEI-QRVPDWE 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 19921076 127 NALRRIIEKYtDNVRFCVI--CNYL--SKIIPALQSRCTRFRFAPLSQD 171
Cdd:pfam13173 78 LALKRLYDDG-PNGRVILTgsSALLlsKEIAESLAGRVVVIELYPLSFR 125
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
25-133 |
5.40e-03 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 37.00 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 25 LISHEEIISTITRFISRKqlphLLFYGPPGTGKTSTILACARQLYSPqqfksmVLELNASDDrgIGIVRGQilNFASTRT 104
Cdd:cd19518 19 PILPPEYFQHLGVEPPRG----VLLHGPPGCGKTMLANAIAGELKVP------FLKISATEI--VSGVSGE--SEEKIRE 84
|
90 100 110
....*....|....*....|....*....|....*...
gi 19921076 105 IFcDTFK-----LIILDEADAMTNDAQNAL----RRII 133
Cdd:cd19518 85 LF-DQAIsnapcIVFIDEIDAITPKRESAQremeRRIV 121
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
37-135 |
6.15e-03 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 37.45 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19921076 37 RFISRKQlpHLLFYGPPGTGKTStiLACA------RQLYS------PQqfksMVLEL-NASDDRGIGIVRGQILNfastr 103
Cdd:COG1484 94 DFIERGE--NLILLGPPGTGKTH--LAIAlgheacRAGYRvrfttaPD----LVNELkEARADGRLERLLKRLAK----- 160
|
90 100 110
....*....|....*....|....*....|....
gi 19921076 104 tifcdtFKLIILDE--ADAMTNDAQNALRRIIEK 135
Cdd:COG1484 161 ------VDLLILDElgYLPLDAEGAELLFELISD 188
|
|
| DEXXQc_HELZ2-N |
cd18076 |
N-terminal DEXXQ-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known ... |
40-68 |
6.56e-03 |
|
N-terminal DEXXQ-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known as PPAR-alpha-interacting complex protein 285 or PRIC285 and PPAR-gamma DBD-interacting protein 1 or PDIP1) acts as a transcriptional coactivator for a number of nuclear receptors including PPARA, PPARG, THRA, THRB, and RXRA. It belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350834 [Multi-domain] Cd Length: 230 Bit Score: 37.56 E-value: 6.56e-03
10 20
....*....|....*....|....*....
gi 19921076 40 SRKQLPHLLFYGPPGTGKTSTILACARQL 68
Cdd:cd18076 19 EARFVPPLLIYGPFGTGKTFTLAMAALEV 47
|
|
| DEXXQc_Mov10L1 |
cd18078 |
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds ... |
42-69 |
6.64e-03 |
|
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. Mov10L1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350836 [Multi-domain] Cd Length: 230 Bit Score: 37.35 E-value: 6.64e-03
10 20
....*....|....*....|....*...
gi 19921076 42 KQLPHLLFyGPPGTGKTSTILACARQLY 69
Cdd:cd18078 19 RPLPYILF-GPPGTGKTVTIIEAILQVV 45
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
29-68 |
6.99e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 36.71 E-value: 6.99e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 19921076 29 EEIISTITRFISR---KQLPHLLFYGPPGTGKTSTILACARQL 68
Cdd:pfam13191 6 EEELEQLLDALDRvrsGRPPSVLLTGEAGTGKTTLLRELLRAL 48
|
|
| |
