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Conserved domains on  [gi|221474998|ref|NP_609652|]
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uncharacterized protein Dmel_CG7110, isoform B [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-387 1.51e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQN 359
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317

                         90       100
                 ....*....|....*....|....*...
gi 221474998 360 RLMREQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  318 LEELEEELAELEEELEELEEELEELEEE 345
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-387 1.51e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQN 359
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317

                         90       100
                 ....*....|....*....|....*...
gi 221474998 360 RLMREQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  318 LEELEEELAELEEELEELEEELEELEEE 345
PTZ00121 PTZ00121
MAEBL; Provisional
 283-373 1.94e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 1.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  283 LRSAELETARKKDyqrDLMQQIDEKRRSIELLR---EKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQN 359
Cdd:PTZ00121 1652 LKKAEEENKIKAA---EEAKKAEEDKKKAEEAKkaeEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728

                          90
                  ....*....|....
gi 221474998  360 RLMREQLLAKLEQD 373
Cdd:PTZ00121 1729 KIKAEEAKKEAEED 1742
TPH pfam13868
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ...
 278-375 3.98e-04

Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.


Pssm-ID: 464007 [Multi-domain]  Cd Length: 341  Bit Score: 43.37  E-value: 3.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  278 IMERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSE 357
Cdd:pfam13868 106 IVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKERE 185

                          90
                  ....*....|....*...
gi 221474998  358 QNRLMREQLLAKLEQDAQ 375
Cdd:pfam13868 186 IARLRAQQEKAQDEKAER 203
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 284-381 4.46e-03

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 40.21  E-value: 4.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  284 RSAELETARKKDYQRdlMQQIDEKRRSIELLREKE-RRQEEALTRRLEAQLKTIQLEEQLEK-----ERVRAEKARIDSE 357
Cdd:TIGR02794  76 QAEEAEKQRAAEQAR--QKELEQRAAAEKAAKQAEqAAKQAEEKQKQAEEAKAKQAAEAKAKaeaeaERKAKEEAAKQAE 153

                          90       100
                  ....*....|....*....|....
gi 221474998  358 QNRLMREQLLAKLEQDAQLLNAKE 381
Cdd:TIGR02794 154 EEAKAKAAAEAKKKAEEAKKKAEA 177
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-387 1.51e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQN 359
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317

                         90       100
                 ....*....|....*....|....*...
gi 221474998 360 RLMREQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  318 LEELEEELAELEEELEELEEELEELEEE 345
PTZ00121 PTZ00121
MAEBL; Provisional
 283-373 1.94e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.13  E-value: 1.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  283 LRSAELETARKKDyqrDLMQQIDEKRRSIELLR---EKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQN 359
Cdd:PTZ00121 1652 LKKAEEENKIKAA---EEAKKAEEDKKKAEEAKkaeEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728

                          90
                  ....*....|....
gi 221474998  360 RLMREQLLAKLEQD 373
Cdd:PTZ00121 1729 KIKAEEAKKEAEED 1742
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-387 2.24e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.93  E-value: 2.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQL---EKERVRAEKARIDS 356
Cdd:COG1196  298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELaeaEEALLEAEAELAEA 377

                         90       100       110
                 ....*....|....*....|....*....|.
gi 221474998 357 EQNRLMREQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  378 EEELEELAEELLEALRAAAELAAQLEELEEA 408
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-387 3.82e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.16  E-value: 3.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKK---------DYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAE 350
Cdd:COG1196  261 ELAELEAELEELRLEleeleleleEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 221474998 351 KARIDSEQNRLMREQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
TPH pfam13868
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ...
 278-375 3.98e-04

Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.


Pssm-ID: 464007 [Multi-domain]  Cd Length: 341  Bit Score: 43.37  E-value: 3.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  278 IMERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSE 357
Cdd:pfam13868 106 IVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKERE 185

                          90
                  ....*....|....*...
gi 221474998  358 QNRLMREQLLAKLEQDAQ 375
Cdd:pfam13868 186 IARLRAQQEKAQDEKAER 203
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-393 4.53e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.77  E-value: 4.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIE-LLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQ 358
Cdd:COG1196  378 EEELEELAEELLEALRAAAELAAQLEELEEAEEaLLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 221474998 359 NRLMREQLLAKLEQDAQLLNAKETNNLAETPRTSR 393
Cdd:COG1196  458 EEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
PTZ00121 PTZ00121
MAEBL; Provisional
 284-373 1.58e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.44  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  284 RSAELETARKKDYQRDLMQQIDEKRRSIELLR--EKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQNRL 361
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661

                          90
                  ....*....|..
gi 221474998  362 MREQLLAKLEQD 373
Cdd:PTZ00121 1662 KAAEEAKKAEED 1673
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 279-381 2.53e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.26  E-value: 2.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  279 MERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEA--------------QLKTIQLEEQLEK 344
Cdd:pfam17380 312 VERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERirqeeiameisrmrELERLQMERQQKN 391

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 221474998  345 ERVRAE-----KARI-DSEQNRLMREQLLAKLEQDAQLLNAKE 381
Cdd:pfam17380 392 ERVRQEleaarKVKIlEEERQRKIQQQKVEMEQIRAEQEEARQ 434
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 279-387 2.84e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 2.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 279 MERNLRSAELETARKKDYqRDLMQQIDEKRRSIELLR-----------EKERRQEEALTRRLEAQLKTIQLEEQLEKERV 347
Cdd:COG1196  198 LERQLEPLERQAEKAERY-RELKEELKELEAELLLLKlreleaeleelEAELEELEAELEELEAELAELEAELEELRLEL 276

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 221474998 348 RAEKARIDSEQNRLMR-EQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  277 EELELELEEAQAEEYElLAELARLEQDIARLEERRRELEER 317
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 278-387 3.40e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 3.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 278 IMERNLRSAELETARKKdyQRDLMQQIDEKRRSIELLREKERRQEEALTR------RLEAQLKTIQLEEQ-LEKERVRAE 350
Cdd:COG1196  224 ELEAELLLLKLRELEAE--LEELEAELEELEAELEELEAELAELEAELEElrleleELELELEEAQAEEYeLLAELARLE 301

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 221474998 351 KARIDSEQNRLMREQLLAKLEQDAQLLNAKETNNLAE 387
Cdd:COG1196  302 QDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
PTZ00121 PTZ00121
MAEBL; Provisional
 281-401 3.57e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 3.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  281 RNLRSAELETARKKDYQRdlmqQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQNR 360
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELK----KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 221474998  361 LMREQLLAKLEQDAQLLNAKETNNLAETPRTSRIKGKTNNA 401
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 294-379 3.86e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 3.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 294 KDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEKARIDSEQNRLMREQLLAKLEQD 373
Cdd:COG4942  142 KYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221


                 ....*.
gi 221474998 374 AQLLNA 379
Cdd:COG4942  222 AEELEA 227
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
281-379 4.13e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 4.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  281 RNLRSA--ELETARKkdyQRDLMQQIDEKRRSIELLREKERRQEEALT--RRLEAQLKTIQLEEQLekERVRAEKARIDS 356
Cdd:COG4913   235 DDLERAheALEDARE---QIELLEPIRELAERYAAARERLAELEYLRAalRLWFAQRRLELLEAEL--EELRAELARLEA 309

                          90       100
                  ....*....|....*....|...
gi 221474998  357 EQNRLmrEQLLAKLEQDAQLLNA 379
Cdd:COG4913   310 ELERL--EARLDALREELDELEA 330
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 284-381 4.46e-03

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 40.21  E-value: 4.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998  284 RSAELETARKKDYQRdlMQQIDEKRRSIELLREKE-RRQEEALTRRLEAQLKTIQLEEQLEK-----ERVRAEKARIDSE 357
Cdd:TIGR02794  76 QAEEAEKQRAAEQAR--QKELEQRAAAEKAAKQAEqAAKQAEEKQKQAEEAKAKQAAEAKAKaeaeaERKAKEEAAKQAE 153

                          90       100
                  ....*....|....*....|....
gi 221474998  358 QNRLMREQLLAKLEQDAQLLNAKE 381
Cdd:TIGR02794 154 EEAKAKAAAEAKKKAEEAKKKAEA 177
PRK12704 PRK12704
phosphodiesterase; Provisional
 280-381 4.75e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 40.53  E-value: 4.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELET-ARKKDYQRDLMQQIDEKRRSIEllreKERRQEEALTRRLEAQLKtiQLEEQLEK--ERVRAEKARIDS 356
Cdd:PRK12704  41 KRILEEAKKEAeAIKKEALLEAKEEIHKLRNEFE----KELRERRNELQKLEKRLL--QKEENLDRklELLEKREEELEK 114

                         90       100
                 ....*....|....*....|....*.
gi 221474998 357 EQNRLM-REQLLAKLEQDAQLLNAKE 381
Cdd:PRK12704 115 KEKELEqKQQELEKKEEELEELIEEQ 140
PRK12704 PRK12704
phosphodiesterase; Provisional
 279-376 5.00e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 40.15  E-value: 5.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 279 MERNLRSAELEtARKK--DYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAqLKtiQLEEQLEKERVRAEKAR--I 354
Cdd:PRK12704  51 AEAIKKEALLE-AKEEihKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLEL-LE--KREEELEKKEKELEQKQqeL 126

                         90       100
                 ....*....|....*....|....
gi 221474998 355 DSEQNRL--MREQLLAKLEQDAQL 376
Cdd:PRK12704 127 EKKEEELeeLIEEQLQELERISGL 150
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 280-381 6.04e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 6.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998   280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLR----EKERRQEEAlTRRLEAQLKTIQ-LEEQLEKERVRAEKARI 354
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRlevsELEEEIEEL-QKELYALANEISrLEQQKQILRERLANLER 316

                           90       100
                   ....*....|....*....|....*..
gi 221474998   355 DSEQNRLMREQLLAKLEQDAQLLNAKE 381
Cdd:TIGR02168  317 QLEELEAQLEELESKLDELAEELAELE 343
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
298-391 6.76e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.00  E-value: 6.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 298 RDLMQQIDEKRRSIEllREKERRQEEALTRRLEAQLKTIQLEEQLEKERVRAEK-ARIDSEQNRLMRE---------QLL 367
Cdd:COG3206  294 IALRAQIAALRAQLQ--QEAQRILASLEAELEALQAREASLQAQLAQLEARLAElPELEAELRRLEREvevarelyeSLL 371

                         90       100
                 ....*....|....*....|....*....
gi 221474998 368 AKLEQdAQLLNAKETNNL-----AETPRT 391
Cdd:COG3206  372 QRLEE-ARLAEALTVGNVrvidpAVVPLK 399
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-381 7.50e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 7.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQ------RDLMQQIDEKRRSIELLREKERRQEEAltRRLEAQLktIQLEEQLEKERVRAEKAR 353
Cdd:COG1196  275 ELEELELELEEAQAEEYEllaelaRLEQDIARLEERRRELEERLEELEEEL--AELEEEL--EELEEELEELEEELEEAE 350

                         90       100
                 ....*....|....*....|....*...
gi 221474998 354 IDSEQNRLMREQLLAKLEQDAQLLNAKE 381
Cdd:COG1196  351 EELEEAEAELAEAEEALLEAEAELAEAE 378
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 280-382 7.89e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 7.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221474998 280 ERNLRSAELETARKKDYQRDLMQQIDEKRRSIELLREKERRQEEALTRRLEAQLKTI-QLEEQLEKERVRAEKARIDSEQ 358
Cdd:COG1196  367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeELEEALAELEEEEEEEEEALEE 446

                         90       100
                 ....*....|....*....|....
gi 221474998 359 NRLMREQLLAKLEQDAQLLNAKET 382
Cdd:COG1196  447 AAEEEAELEEEEEALLELLAELLE 470
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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