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Conserved domains on  [gi|20129751|ref|NP_610283|]
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uncharacterized protein Dmel_CG11127 [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
347-385 6.28e-04

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14949:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 944  Bit Score: 42.40  E-value: 6.28e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 20129751  347 DDRKKLLpDNVQYDPER---------------RSEFKTLLNRLELPPAQ---LLAST 385
Cdd:PRK14949 102 DDTRELL-DNVQYRPSRgrfkvylidevhmlsRSSFNALLKTLEEPPEHvkfLLATT 157
 
Name Accession Description Interval E-value
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
347-385 6.28e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 42.40  E-value: 6.28e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 20129751  347 DDRKKLLpDNVQYDPER---------------RSEFKTLLNRLELPPAQ---LLAST 385
Cdd:PRK14949 102 DDTRELL-DNVQYRPSRgrfkvylidevhmlsRSSFNALLKTLEEPPEHvkfLLATT 157
 
Name Accession Description Interval E-value
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
347-385 6.28e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 42.40  E-value: 6.28e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 20129751  347 DDRKKLLpDNVQYDPER---------------RSEFKTLLNRLELPPAQ---LLAST 385
Cdd:PRK14949 102 DDTRELL-DNVQYRPSRgrfkvylidevhmlsRSSFNALLKTLEEPPEHvkfLLATT 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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