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Conserved domains on  [gi|19922802|ref|NP_611759|]
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Kinesin-like protein at 59C [Drosophila melanogaster]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
187-519 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 571.16  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLVKFLENHSFRFDYVFDEECSNATVYEFTARPLIKHIF 266
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 267 DGGMATCFAYGQTGSGKTYTMGGQFPGrhQSSMDGIYAMAAKDVFSTLKTVPYnKLNLKVYCSFFEIYGTRVFDLLMPGK 346
Cdd:cd01367  81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 347 PqLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHGKFSLIDLA 426
Cdd:cd01367 158 R-VRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLHGKLSFVDLA 236
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 427 GNERGADNSSADRQTRLEGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSFIgGKKVKTCMIAMISPCLHSVE 506
Cdd:cd01367 237 GSERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFI-GENSKTCMIATISPGASSCE 315
                       330
                ....*....|...
gi 19922802 507 HTLNTLRYADRVK 519
Cdd:cd01367 316 HTLNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
187-519 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 571.16  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLVKFLENHSFRFDYVFDEECSNATVYEFTARPLIKHIF 266
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 267 DGGMATCFAYGQTGSGKTYTMGGQFPGrhQSSMDGIYAMAAKDVFSTLKTVPYnKLNLKVYCSFFEIYGTRVFDLLMPGK 346
Cdd:cd01367  81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 347 PqLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHGKFSLIDLA 426
Cdd:cd01367 158 R-VRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLHGKLSFVDLA 236
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 427 GNERGADNSSADRQTRLEGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSFIgGKKVKTCMIAMISPCLHSVE 506
Cdd:cd01367 237 GSERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFI-GENSKTCMIATISPGASSCE 315
                       330
                ....*....|...
gi 19922802 507 HTLNTLRYADRVK 519
Cdd:cd01367 316 HTLNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
193-520 1.14e-129

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 383.85  E-value: 1.14e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   193 RKRPLRRKELADREQDVVSIPSkhtlVVHEPRKHVNLVKFLENHSFRFDYVFDEECSNATVYEFTARPLIKHIFDGGMAT 272
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVES----VDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   273 CFAYGQTGSGKTYTMGGqfpgrhQSSMDGIYAMAAKDVFSTLKTVPyNKLNLKVYCSFFEIYGTRVFDLLMPG---KPQL 349
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEG------SDEQPGIIPRALEDLFDRIQKTK-ERSEFSVKVSYLEIYNEKIRDLLSPSnknKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   350 RVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSA------AGEKLHGKFSLI 423
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRnrstggEESVKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   424 DLAGNERGADNSSADRQTRLEGSEINKSLLVLKECIRALG-RQSSHLPFRGSKLTQVLRDSFIGgkKVKTCMIAMISPCL 502
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALAdKKSKHIPYRDSKLTRLLQDSLGG--NSKTLMIANISPSS 307
                         330
                  ....*....|....*...
gi 19922802   503 HSVEHTLNTLRYADRVKE 520
Cdd:pfam00225 308 SNYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
187-521 2.93e-124

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 370.36  E-value: 2.93e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    187 QIMVCVRKRPLRRKELADREQDVVSIPSKH--TLVVHEPRKHVnlvkflENHSFRFDYVFDEECSNATVYEFTARPLIKH 264
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgkTLTVRSPKNRQ------GEKKFTFDKVFDATASQEDVFEETAAPLVDS 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    265 IFDGGMATCFAYGQTGSGKTYTMGGQfpgrhqSSMDGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYGTRVFDLLMP 344
Cdd:smart00129  75 VLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLNP 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    345 GKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAA-----GEKLHGK 419
Cdd:smart00129 148 SSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIknsssGSGKASK 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    420 FSLIDLAGNERGADnSSADRQTRLEGSEINKSLLVLKECIRALG--RQSSHLPFRGSKLTQVLRDSFigGKKVKTCMIAM 497
Cdd:smart00129 228 LNLVDLAGSERAKK-TGAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL--GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....
gi 19922802    498 ISPCLHSVEHTLNTLRYADRVKEL 521
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEI 328
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
188-521 2.03e-74

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 248.89  E-value: 2.03e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRK--HVNLVKFLENhSFRFDYVFDEECSNATVYEFTARPLIKHI 265
Cdd:COG5059   7 SPLKSRLSSRNEKSVSDIKSTIRIIPGELGERLINTSKksHVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSL 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 266 FDGGMATCFAYGQTGSGKTYTMGGqfpgrHQSSMdGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYGTRVFDLLMPG 345
Cdd:COG5059  86 LLGYNCTVFAYGQTGSGKTYTMSG-----TEEEP-GIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLSPN 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 346 KPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRS---AAGEKLHGKFSL 422
Cdd:COG5059 159 EESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASknkVSGTSETSKLSL 238
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 423 IDLAGNERGADnsSADRQTRL-EGSEINKSLLVLKECIRALGRQ--SSHLPFRGSKLTQVLRDSfIGGKKvKTCMIAMIS 499
Cdd:COG5059 239 VDLAGSERAAR--TGNRGTRLkEGASINKSLLTLGNVINALGDKkkSGHIPYRESKLTRLLQDS-LGGNC-NTRVICTIS 314
                       330       340
                ....*....|....*....|..
gi 19922802 500 PCLHSVEHTLNTLRYADRVKEL 521
Cdd:COG5059 315 PSSNSFEETINTLKFASRAKSI 336
PLN03188 PLN03188
kinesin-12 family protein; Provisional
188-533 1.20e-41

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 162.41  E-value: 1.20e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   188 IMVCVRKRPLRRKEladREQDVVSIPSKHTLVVHEprkhvnlvkflenHSFRFDYVFDEECSNATVYEFTARPLIKHIFD 267
Cdd:PLN03188  100 VKVIVRMKPLNKGE---EGEMIVQKMSNDSLTING-------------QTFTFDSIADPESTQEDIFQLVGAPLVENCLA 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   268 GGMATCFAYGQTGSGKTYTMGGQFPGRHQSSMDGIYAMAAKDVFSTL------KTVPY--NKLNLKVYCSFFEIYGTRVF 339
Cdd:PLN03188  164 GFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLfarineEQIKHadRQLKYQCRCSFLEIYNEQIT 243
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   340 DLLMPGKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHG- 418
Cdd:PLN03188  244 DLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGl 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   419 ------KFSLIDLAGNERGADNSSADRQTRlEGSEINKSLLVLKECIRALGRQSS-----HLPFRGSKLTQVLRDSFigG 487
Cdd:PLN03188  324 ssfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEISQtgkqrHIPYRDSRLTFLLQESL--G 400
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 19922802   488 KKVKTCMIAMISPCLHSVEHTLNTLRYADRVKELSVESIPSKRMPD 533
Cdd:PLN03188  401 GNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
187-519 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 571.16  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLVKFLENHSFRFDYVFDEECSNATVYEFTARPLIKHIF 266
Cdd:cd01367   1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 267 DGGMATCFAYGQTGSGKTYTMGGQFPGrhQSSMDGIYAMAAKDVFSTLKTVPYnKLNLKVYCSFFEIYGTRVFDLLMPGK 346
Cdd:cd01367  81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPY-KDNLGVTVSFFEIYGGKVFDLLNRKK 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 347 PqLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHGKFSLIDLA 426
Cdd:cd01367 158 R-VRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGTNKLHGKLSFVDLA 236
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 427 GNERGADNSSADRQTRLEGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSFIgGKKVKTCMIAMISPCLHSVE 506
Cdd:cd01367 237 GSERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFI-GENSKTCMIATISPGASSCE 315
                       330
                ....*....|...
gi 19922802 507 HTLNTLRYADRVK 519
Cdd:cd01367 316 HTLNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
193-520 1.14e-129

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 383.85  E-value: 1.14e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   193 RKRPLRRKELADREQDVVSIPSkhtlVVHEPRKHVNLVKFLENHSFRFDYVFDEECSNATVYEFTARPLIKHIFDGGMAT 272
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVES----VDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   273 CFAYGQTGSGKTYTMGGqfpgrhQSSMDGIYAMAAKDVFSTLKTVPyNKLNLKVYCSFFEIYGTRVFDLLMPG---KPQL 349
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEG------SDEQPGIIPRALEDLFDRIQKTK-ERSEFSVKVSYLEIYNEKIRDLLSPSnknKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   350 RVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSA------AGEKLHGKFSLI 423
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRnrstggEESVKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   424 DLAGNERGADNSSADRQTRLEGSEINKSLLVLKECIRALG-RQSSHLPFRGSKLTQVLRDSFIGgkKVKTCMIAMISPCL 502
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALAdKKSKHIPYRDSKLTRLLQDSLGG--NSKTLMIANISPSS 307
                         330
                  ....*....|....*...
gi 19922802   503 HSVEHTLNTLRYADRVKE 520
Cdd:pfam00225 308 SNYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
187-521 2.93e-124

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 370.36  E-value: 2.93e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    187 QIMVCVRKRPLRRKELADREQDVVSIPSKH--TLVVHEPRKHVnlvkflENHSFRFDYVFDEECSNATVYEFTARPLIKH 264
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgkTLTVRSPKNRQ------GEKKFTFDKVFDATASQEDVFEETAAPLVDS 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    265 IFDGGMATCFAYGQTGSGKTYTMGGQfpgrhqSSMDGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYGTRVFDLLMP 344
Cdd:smart00129  75 VLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLNP 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    345 GKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAA-----GEKLHGK 419
Cdd:smart00129 148 SSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIknsssGSGKASK 227
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802    420 FSLIDLAGNERGADnSSADRQTRLEGSEINKSLLVLKECIRALG--RQSSHLPFRGSKLTQVLRDSFigGKKVKTCMIAM 497
Cdd:smart00129 228 LNLVDLAGSERAKK-TGAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL--GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....
gi 19922802    498 ISPCLHSVEHTLNTLRYADRVKEL 521
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEI 328
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
187-519 1.88e-119

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 357.72  E-value: 1.88e-119
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKElADREQDVVSIPSKHTLVVHEPRKHVNlvkflENHSFRFDYVFDEECSNATVYEFTARPLIKHIF 266
Cdd:cd00106   1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKNRVA-----PPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 267 DGGMATCFAYGQTGSGKTYTMGGQFPGRhqssmDGIYAMAAKDVFSTLKTVPYNKLNLKVYCSFFEIYGTRVFDLLMPG- 345
Cdd:cd00106  75 EGYNGTIFAYGQTGSGKTYTMLGPDPEQ-----RGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSPVp 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 346 KPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSA-----AGEKLHGKF 420
Cdd:cd00106 150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRnreksGESVTSSKL 229
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 421 SLIDLAGNERGADnSSADRQTRLEGSEINKSLLVLKECIRALG-RQSSHLPFRGSKLTQVLRDSFIGGKkvKTCMIAMIS 499
Cdd:cd00106 230 NLVDLAGSERAKK-TGAEGDRLKEGGNINKSLSALGKVISALAdGQNKHIPYRDSKLTRLLQDSLGGNS--KTIMIACIS 306
                       330       340
                ....*....|....*....|
gi 19922802 500 PCLHSVEHTLNTLRYADRVK 519
Cdd:cd00106 307 PSSENFEETLSTLRFASRAK 326
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
187-521 6.36e-88

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 277.30  E-value: 6.36e-88
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLVKFLENHS-----------FRFDYVFDEECSNATVYE 255
Cdd:cd01370   1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVFDPKDEEDGFFHGGSNNRdrrkrrnkelkYVFDRVFDETSTQEEVYE 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 256 FTARPLIKHIFDGGMATCFAYGQTGSGKTYTMGGQfpgrhqSSMDGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYG 335
Cdd:cd01370  81 ETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGT------PQEPGLMVLTMKELFKRIESLKDEK-EFEVSMSYLEIYN 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 336 TRVFDLLMPGKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLR------ 409
Cdd:cd01370 154 ETIRDLLNPSSGPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRqqdkta 233
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 410 SAAGEKLHGKFSLIDLAGNERGAdnSSADRQTRL-EGSEINKSLLVLKECIRAL---GRQSSHLPFRGSKLTQVLRDSfI 485
Cdd:cd01370 234 SINQQVRQGKLSLIDLAGSERAS--ATNNRGQRLkEGANINRSLLALGNCINALadpGKKNKHIPYRDSKLTRLLKDS-L 310
                       330       340       350
                ....*....|....*....|....*....|....*.
gi 19922802 486 GGkKVKTCMIAMISPCLHSVEHTLNTLRYADRVKEL 521
Cdd:cd01370 311 GG-NCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
188-517 2.89e-85

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 270.36  E-value: 2.89e-85
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKhvnlvkflenhSFRFDYVFDEECSNATVYEFTARPLIKHIFD 267
Cdd:cd01372   3 VRVAVRVRPLLPKEIIEGCRICVSFVPGEPQVTVGTDK-----------SFTFDYVFDPSTEQEEVYNTCVAPLVDGLFE 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 268 GGMATCFAYGQTGSGKTYTMGGQFPGRHQSSMDGIYAMAAKDVFSTLKTVPyNKLNLKVYCSFFEIYGTRVFDLLMP--- 344
Cdd:cd01372  72 GYNATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFKKIEKKK-DTFEFQLKVSFLEIYNEEIRDLLDPetd 150
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 345 GKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLR-------------SA 411
Cdd:cd01372 151 KKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEqtkkngpiapmsaDD 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 412 AGEKLHGKFSLIDLAGNERgADNSSADRQTRLEGSEINKSLLVLKECIRALG---RQSSHLPFRGSKLTQVLRDSfIGGK 488
Cdd:cd01372 231 KNSTFTSKFHFVDLAGSER-LKRTGATGDRLKEGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LGGN 308
                       330       340
                ....*....|....*....|....*....
gi 19922802 489 KvKTCMIAMISPCLHSVEHTLNTLRYADR 517
Cdd:cd01372 309 S-HTLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
187-519 9.91e-83

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 264.21  E-value: 9.91e-83
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLVKF-LENHSFRFDYVF---DEE----CSNATVYEFTA 258
Cdd:cd01365   2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQADKNNKATrEVPKSFSFDYSYwshDSEdpnyASQEQVYEDLG 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 259 RPLIKHIFDGGMATCFAYGQTGSGKTYTMGGqfpgrhQSSMDGIYAMAAKDVFSTLKTVPYNKLNLKVYCSFFEIYGTRV 338
Cdd:cd01365  82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMG------TQEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKV 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 339 FDLLMPGKPQ----LRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGE 414
Cdd:cd01365 156 RDLLNPKPKKnkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHD 235
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 415 KLHG-------KFSLIDLAGNERGadNSSADRQTRL-EGSEINKSLLVLKECIRAL--------GRQSSHLPFRGSKLTQ 478
Cdd:cd01365 236 AETNlttekvsKISLVDLAGSERA--SSTGATGDRLkEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDSVLTW 313
                       330       340       350       360
                ....*....|....*....|....*....|....*....|.
gi 19922802 479 VLRDSfIGGKKvKTCMIAMISPCLHSVEHTLNTLRYADRVK 519
Cdd:cd01365 314 LLKEN-LGGNS-KTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
188-521 4.27e-81

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 258.42  E-value: 4.27e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSIpSKHTLVVHEPrkhvnlvkflENHSFRFDYVFDEECSNATVYEFTARPLIKHIFD 267
Cdd:cd01374   2 ITVTVRVRPLNSREIGINEQVAWEI-DNDTIYLVEP----------PSTSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 268 GGMATCFAYGQTGSGKTYTMGGqfpgrhQSSMDGIYAMAAKDVFSTLKTVPYNKLNLKVycSFFEIYGTRVFDLLMPGKP 347
Cdd:cd01374  71 GYNGTIFAYGQTSSGKTFTMSG------DEDEPGIIPLAIRDIFSKIQDTPDREFLLRV--SYLEIYNEKINDLLSPTSQ 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 348 QLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHGK------FS 421
Cdd:cd01374 143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGELEEGtvrvstLN 222
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 422 LIDLAGNERGA-DNSSADRqtRLEGSEINKSLLVLKECIRAL--GRQSSHLPFRGSKLTQVLRDSfIGGKKvKTCMIAMI 498
Cdd:cd01374 223 LIDLAGSERAAqTGAAGVR--RKEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPS-LGGNS-RTAIICTI 298
                       330       340
                ....*....|....*....|...
gi 19922802 499 SPCLHSVEHTLNTLRYADRVKEL 521
Cdd:cd01374 299 TPAESHVEETLNTLKFASRAKKI 321
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
188-519 8.01e-76

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 245.20  E-value: 8.01e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADrEQDVVSIPSKHTLVVHEPRKHVnlvkflENHSFRFDYVFDEECSNATVYEfTARPLIKHIFD 267
Cdd:cd01366   4 IRVFCRVRPLLPSEENE-DTSHITFPDEDGQTIELTSIGA------KQKEFSFDKVFDPEASQEDVFE-EVSPLVQSALD 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 268 GGMATCFAYGQTGSGKTYTMGGQfpgrhqSSMDGIYAMAAKDVFSTLKTVPYNKLNLKVYCSFFEIYGTRVFDLLMPGKP 347
Cdd:cd01366  76 GYNVCIFAYGQTGSGKTYTMEGP------PESPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGNA 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 348 QLRVLEDR----NQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRS---AAGEKLHGKF 420
Cdd:cd01366 150 PQKKLEIRhdseKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGrnlQTGEISVGKL 229
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 421 SLIDLAGNERgADNSSADRQTRLEGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSFIGGKkvKTCMIAMISP 500
Cdd:cd01366 230 NLVDLAGSER-LNKSGATGDRLKETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGGNS--KTLMFVNISP 306
                       330
                ....*....|....*....
gi 19922802 501 CLHSVEHTLNTLRYADRVK 519
Cdd:cd01366 307 AESNLNETLNSLRFASKVN 325
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
185-519 1.15e-75

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 244.55  E-value: 1.15e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 185 CHqIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHvnlvkflenHSFRFDYVFDEECSNATVYEFTARPLIKH 264
Cdd:cd01369   2 CN-IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIATSETG---------KTFSFDRVFDPNTTQEDVYNFAAKPIVDD 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 265 IFDGGMATCFAYGQTGSGKTYTMGGqfpGRHQSSMDGIYAMAAKDVFSTLKTVPYNkLNLKVYCSFFEIYGTRVFDLLMP 344
Cdd:cd01369  72 VLNGYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFETIYSMDEN-LEFHVKVSYFEIYMEKIRDLLDV 147
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 345 GKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRS---AAGEKLHGKFS 421
Cdd:cd01369 148 SKTNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQenvETEKKKSGKLY 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 422 LIDLAGNERgADNSSADRQTRLEGSEINKSLLVLKECIRALG-RQSSHLPFRGSKLTQVLRDSfIGGKKvKTCMIAMISP 500
Cdd:cd01369 228 LVDLAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTdGKKTHIPYRDSKLTRILQDS-LGGNS-RTTLIICCSP 304
                       330
                ....*....|....*....
gi 19922802 501 CLHSVEHTLNTLRYADRVK 519
Cdd:cd01369 305 SSYNESETLSTLRFGQRAK 323
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
188-521 2.03e-74

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 248.89  E-value: 2.03e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRK--HVNLVKFLENhSFRFDYVFDEECSNATVYEFTARPLIKHI 265
Cdd:COG5059   7 SPLKSRLSSRNEKSVSDIKSTIRIIPGELGERLINTSKksHVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSL 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 266 FDGGMATCFAYGQTGSGKTYTMGGqfpgrHQSSMdGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYGTRVFDLLMPG 345
Cdd:COG5059  86 LLGYNCTVFAYGQTGSGKTYTMSG-----TEEEP-GIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLSPN 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 346 KPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRS---AAGEKLHGKFSL 422
Cdd:COG5059 159 EESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASknkVSGTSETSKLSL 238
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 423 IDLAGNERGADnsSADRQTRL-EGSEINKSLLVLKECIRALGRQ--SSHLPFRGSKLTQVLRDSfIGGKKvKTCMIAMIS 499
Cdd:COG5059 239 VDLAGSERAAR--TGNRGTRLkEGASINKSLLTLGNVINALGDKkkSGHIPYRESKLTRLLQDS-LGGNC-NTRVICTIS 314
                       330       340
                ....*....|....*....|..
gi 19922802 500 PCLHSVEHTLNTLRYADRVKEL 521
Cdd:COG5059 315 PSSNSFEETINTLKFASRAKSI 336
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
188-519 2.79e-74

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 241.21  E-value: 2.79e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSI-PSKHTLVVHEPRKHVNLVKflenHSFRFDYVFDEECSNATVYEFTARPLIKHIF 266
Cdd:cd01371   3 VKVVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKATANEPP----KTFTFDAVFDPNSKQLDVYDETARPLVDSVL 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 267 DGGMATCFAYGQTGSGKTYTMGGQfpgRHQSSMDGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYGTRVFDLLmpGK 346
Cdd:cd01371  79 EGYNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHIARSQNNQ-QFLVRVSYLEIYNEEIRDLL--GK 152
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 347 PQ---LRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVL-RSAAGE--KLH--- 417
Cdd:cd01371 153 DQtkrLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIeCSEKGEdgENHirv 232
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 418 GKFSLIDLAGNERgADNSSADRQTRLEGSEINKSLLVLKECIRAL-GRQSSHLPFRGSKLTQVLRDSFigGKKVKTCMIA 496
Cdd:cd01371 233 GKLNLVDLAGSER-QSKTGATGERLKEATKINLSLSALGNVISALvDGKSTHIPYRDSKLTRLLQDSL--GGNSKTVMCA 309
                       330       340
                ....*....|....*....|...
gi 19922802 497 MISPCLHSVEHTLNTLRYADRVK 519
Cdd:cd01371 310 NIGPADYNYDETLSTLRYANRAK 332
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
188-535 7.18e-68

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 224.90  E-value: 7.18e-68
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSI--PSKHTLVVHEPRKHVNLVKflenhSFRFDYVFDEECSNATVYEFTARPLIKHI 265
Cdd:cd01364   4 IQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPILDEV 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 266 FDGGMATCFAYGQTGSGKTYTMGGQF-----PGRHQSSMDGIYAMAAKDVFSTLKTvpyNKLNLKVYCSFFEIYGTRVFD 340
Cdd:cd01364  79 LMGYNCTIFAYGQTGTGKTYTMEGDRspneeYTWELDPLAGIIPRTLHQLFEKLED---NGTEYSVKVSYLEIYNEELFD 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 341 LLMPG---KPQLRVLEDRNQQ--VQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVL----RSA 411
Cdd:cd01364 156 LLSPSsdvSERLRMFDDPRNKrgVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIhikeTTI 235
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 412 AGEKLH--GKFSLIDLAGNErGADNSSADRQTRLEGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSfIGGkK 489
Cdd:cd01364 236 DGEELVkiGKLNLVDLAGSE-NIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRLLQDS-LGG-R 312
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*.
gi 19922802 490 VKTCMIAMISPCLHSVEHTLNTLRYADRVKelsveSIpsKRMPDAN 535
Cdd:cd01364 313 TKTSIIATISPASVNLEETLSTLEYAHRAK-----NI--KNKPEVN 351
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
187-515 8.21e-59

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 200.70  E-value: 8.21e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 187 QIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHVNLVKFL----ENHSFRFDYVFDEECSNATVYEFTARPLI 262
Cdd:cd01368   2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKGSAANKSERnggqKETKFSFSKVFGPNTTQKEFFQGTALPLV 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 263 KHIFDGGMATCFAYGQTGSGKTYTMGGQFPGRhqssmdGIYAMAAKDVFSTLKtvpynklNLKVYCSFFEIYGTRVFDLL 342
Cdd:cd01368  82 QDLLHGKNGLLFTYGVTNSGKTYTMQGSPGDG------GILPRSLDVIFNSIG-------GYSVFVSYIEIYNEYIYDLL 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 343 MPG------KPQ-LRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEK 415
Cdd:cd01368 149 EPSpssptkKRQsLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAPGDS 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 416 LH-----------GKFSLIDLAGNERGAD-NSSADRQTrlEGSEINKSLLVLKECIRAL-----GRQSSHLPFRGSKLTQ 478
Cdd:cd01368 229 DGdvdqdkdqitvSQLSLVDLAGSERTSRtQNTGERLK--EAGNINTSLMTLGTCIEVLrenqlQGTNKMVPFRDSKLTH 306
                       330       340       350
                ....*....|....*....|....*....|....*..
gi 19922802 479 VLRDSFIGGKKVktCMIAMISPCLHSVEHTLNTLRYA 515
Cdd:cd01368 307 LFQNYFDGEGKA--SMIVNVNPCASDYDETLHVMKFS 341
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
188-519 6.23e-58

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 198.19  E-value: 6.23e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLrrkelADREQDVVSI-PSKHTLVVHEP----RKHVNLVKflENHSFRFDYVFDEeCSNATVYEFTARPLI 262
Cdd:cd01375   2 VQAFVRVRPT-----DDFAHEMIKYgEDGKSISIHLKkdlrRGVVNNQQ--EDWSFKFDGVLHN-ASQELVYETVAKDVV 73
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 263 KHIFDGGMATCFAYGQTGSGKTYTMGGqfpGRHQSSMDGIYAMAAKDVFSTLKTVPYNKLNLKVycSFFEIYGTRVFDLL 342
Cdd:cd01375  74 SSALAGYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFRMIEERPTKAYTVHV--SYLEIYNEQLYDLL 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 343 ------MPGKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVL----RSAA 412
Cdd:cd01375 149 stlpyvGPSVTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLeahsRTLS 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 413 GEK-LHGKFSLIDLAGNERgADNSSADRQTRLEGSEINKSLLVLKECIRALGRQS-SHLPFRGSKLTQVLRDSFigGKKV 490
Cdd:cd01375 229 SEKyITSKLNLVDLAGSER-LSKTGVEGQVLKEATYINKSLSFLEQAIIALSDKDrTHVPFRQSKLTHVLRDSL--GGNC 305
                       330       340
                ....*....|....*....|....*....
gi 19922802 491 KTCMIAMISPCLHSVEHTLNTLRYADRVK 519
Cdd:cd01375 306 NTVMVANIYGEAAQLEETLSTLRFASRVK 334
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
188-519 1.02e-57

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 196.95  E-value: 1.02e-57
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 188 IMVCVRKRPLRRKELADREQDVVSIPSKHTLVVHEPRKHvnlvkfLENHSFRFDYVFDEECSNATVYEFTARPLIKHIFD 267
Cdd:cd01376   2 VRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADPRNH------GETLKYQFDAFYGEESTQEDIYAREVQPIVPHLLE 75
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 268 GGMATCFAYGQTGSGKTYTMGGQFpgrhqsSMDGIYAMAAKDVFSTLKTVPYnklNLKVYCSFFEIYGTRVFDLLMPGKP 347
Cdd:cd01376  76 GQNATVFAYGSTGAGKTFTMLGSP------EQPGLMPLTVMDLLQMTRKEAW---ALSFTMSYLEIYQEKILDLLEPASK 146
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 348 QLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVL----RSAAGEKLHGKFSLI 423
Cdd:cd01376 147 ELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVdqreRLAPFRQRTGKLNLI 226
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 424 DLAGNErgaDNSSADRQ-TRL-EGSEINKSLLVLKECIRALGRQSSHLPFRGSKLTQVLRDSFIGGkkVKTCMIAMISPC 501
Cdd:cd01376 227 DLAGSE---DNRRTGNEgIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDSLGGG--SRCIMVANIAPE 301
                       330
                ....*....|....*...
gi 19922802 502 LHSVEHTLNTLRYADRVK 519
Cdd:cd01376 302 RTFYQDTLSTLNFAARSR 319
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
186-519 5.62e-55

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 190.41  E-value: 5.62e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 186 HQIMVCVRKRPLRRKELADREQDVVSIPSKHTLVVH-EPRKHvnlvkflenhsFRFDYVFDEECSNATVYEFTARPLIKH 264
Cdd:cd01373   1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHsKPPKT-----------FTFDHVADSNTNQESVFQSVGKPIVES 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 265 IFDGGMATCFAYGQTGSGKTYTMGG------QFPGrhqsSMDGIYAMAAKDVFSTLKTVPYN---KLNLKVYCSFFEIYG 335
Cdd:cd01373  70 CLSGYNGTIFAYGQTGSGKTYTMWGpsesdnESPH----GLRGVIPRIFEYLFSLIQREKEKageGKSFLCKCSFLEIYN 145
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 336 TRVFDLLMPGKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEK 415
Cdd:cd01373 146 EQIYDLLDPASRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKA 225
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 416 LHG-----KFSLIDLAGNERGADnSSADRQTRLEGSEINKSLLVLKECIRAL-----GRQsSHLPFRGSKLTQVLRDSFi 485
Cdd:cd01373 226 CFVnirtsRLNLVDLAGSERQKD-THAEGVRLKEAGNINKSLSCLGHVINALvdvahGKQ-RHVCYRDSKLTFLLRDSL- 302
                       330       340       350
                ....*....|....*....|....*....|....
gi 19922802 486 gGKKVKTCMIAMISPCLHSVEHTLNTLRYADRVK 519
Cdd:cd01373 303 -GGNAKTAIIANVHPSSKCFGETLSTLRFAQRAK 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
188-533 1.20e-41

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 162.41  E-value: 1.20e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   188 IMVCVRKRPLRRKEladREQDVVSIPSKHTLVVHEprkhvnlvkflenHSFRFDYVFDEECSNATVYEFTARPLIKHIFD 267
Cdd:PLN03188  100 VKVIVRMKPLNKGE---EGEMIVQKMSNDSLTING-------------QTFTFDSIADPESTQEDIFQLVGAPLVENCLA 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   268 GGMATCFAYGQTGSGKTYTMGGQFPGRHQSSMDGIYAMAAKDVFSTL------KTVPY--NKLNLKVYCSFFEIYGTRVF 339
Cdd:PLN03188  164 GFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLfarineEQIKHadRQLKYQCRCSFLEIYNEQIT 243
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   340 DLLMPGKPQLRVLEDRNQQVQVVGLTQNPVQNTAEVLDLLELGNSVRTSGHTSANSKSSRSHAVFQIVLRSAAGEKLHG- 418
Cdd:PLN03188  244 DLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGl 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   419 ------KFSLIDLAGNERGADNSSADRQTRlEGSEINKSLLVLKECIRALGRQSS-----HLPFRGSKLTQVLRDSFigG 487
Cdd:PLN03188  324 ssfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEISQtgkqrHIPYRDSRLTFLLQESL--G 400
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 19922802   488 KKVKTCMIAMISPCLHSVEHTLNTLRYADRVKELSVESIPSKRMPD 533
Cdd:PLN03188  401 GNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
234-461 3.70e-12

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 65.06  E-value: 3.70e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 234 ENHSFRFDYVFDEECSNATVYEfTARPLIKHIFDG-GMATCFAYGQTGSGKTYTmggqfpgrhqssMDGIYAMAAKDVFS 312
Cdd:cd01363  16 DSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDGyNNQSIFAYGESGAGKTET------------MKGVIPYLASVAFN 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802 313 TLKTvpyNKLNLKVYCSffEIYGTrvfdllmpgkpqlrvLEDrnqqvqvvgltqnpvqntaEVLDLLELGNSVRTSGhTS 392
Cdd:cd01363  83 GINK---GETEGWVYLT--EITVT---------------LED-------------------QILQANPILEAFGNAK-TT 122
                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19922802 393 ANSKSSRSHAVFQIVLrsaageklhgkfsliDLAGNERgadnssadrqtrlegseINKSLLVLKECIRA 461
Cdd:cd01363 123 RNENSSRFGKFIEILL---------------DIAGFEI-----------------INESLNTLMNVLRA 159
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
188-342 6.56e-06

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 46.06  E-value: 6.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19922802   188 IMVCVRKRPLRRKELAdreqdvVSIPSKHTLVVHEPRKhvnlvkfleNHSFRFDYVFDEECSNATVY-EFTArpLIKHIF 266
Cdd:pfam16796  22 IRVFARVRPELLSEAQ------IDYPDETSSDGKIGSK---------NKSFSFDRVFPPESEQEDVFqEISQ--LVQSCL 84
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 19922802   267 DGGMATCFAYGQTGSGKTytmggqfpgrhqssmDGIYAMAAKDVFSTLKTVPYNKlNLKVYCSFFEIYGTRVFDLL 342
Cdd:pfam16796  85 DGYNVCIFAYGQTGSGSN---------------DGMIPRAREQIFRFISSLKKGW-KYTIELQFVEIYNESSQDLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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