NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|20270271|ref|NP_620082|]
View 

small integral membrane protein 11 [Mus musculus]

Protein Classification

FAM165 domain-containing protein( domain architecture ID 10633178)

FAM165 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
FAM165 super family cl20861
FAM165 family; This family of proteins known as FAM165 are found in eukaryotes. Members of ...
6-52 1.07e-11

FAM165 family; This family of proteins known as FAM165 are found in eukaryotes. Members of this family are as yet uncharacterized. Proteins in this family are typically short membrane proteins between 55 and 70 amino acids in length.


The actual alignment was detected with superfamily member pfam14981:

Pssm-ID: 464419  Cd Length: 49  Bit Score: 52.97  E-value: 1.07e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 20270271    6 LEHVPLLLYILAAKTLILCLAFAGVKMYQRRSLEGKLQAEKRKQSEK 52
Cdd:pfam14981  2 LENFPLLLYILAAKTLILCLAFAGVKMYQSKKLEAQLKKKLEEKQKK 48
 
Name Accession Description Interval E-value
FAM165 pfam14981
FAM165 family; This family of proteins known as FAM165 are found in eukaryotes. Members of ...
6-52 1.07e-11

FAM165 family; This family of proteins known as FAM165 are found in eukaryotes. Members of this family are as yet uncharacterized. Proteins in this family are typically short membrane proteins between 55 and 70 amino acids in length.


Pssm-ID: 464419  Cd Length: 49  Bit Score: 52.97  E-value: 1.07e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 20270271    6 LEHVPLLLYILAAKTLILCLAFAGVKMYQRRSLEGKLQAEKRKQSEK 52
Cdd:pfam14981  2 LENFPLLLYILAAKTLILCLAFAGVKMYQSKKLEAQLKKKLEEKQKK 48
 
Name Accession Description Interval E-value
FAM165 pfam14981
FAM165 family; This family of proteins known as FAM165 are found in eukaryotes. Members of ...
6-52 1.07e-11

FAM165 family; This family of proteins known as FAM165 are found in eukaryotes. Members of this family are as yet uncharacterized. Proteins in this family are typically short membrane proteins between 55 and 70 amino acids in length.


Pssm-ID: 464419  Cd Length: 49  Bit Score: 52.97  E-value: 1.07e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 20270271    6 LEHVPLLLYILAAKTLILCLAFAGVKMYQRRSLEGKLQAEKRKQSEK 52
Cdd:pfam14981  2 LENFPLLLYILAAKTLILCLAFAGVKMYQSKKLEAQLKKKLEEKQKK 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH