|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
224-348 |
2.27e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 49.71 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 224 SGIMAEQNAKSAALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPL--PIFIPSEQGAQRP 301
Cdd:PRK14951 368 AAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAapAAAPAAAPAAVAL 447
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 21357827 302 NSQQFAPGDRTTLQSPVMVLP-PQVPQQRDVVSPQPDINTYRTTEAHP 348
Cdd:PRK14951 448 APAPPAQAAPETVAIPVRVAPePAVASAAPAPAAAPAAARLTPTEEGD 495
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
221-379 |
4.88e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 48.88 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 221 LSLSGIMAEQNAKSAALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIpseqgAQR 300
Cdd:pfam09770 194 MSLEEVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTI-----LQR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 301 PNSQQFAPGDRTT---------LQSPVMVLPPQVPQQRDVVSPQPdiNTYRTTEAHPDHLNYPPSEPQTPRAPSPAVQQL 371
Cdd:pfam09770 269 PQSPQPDPAQPSIqpqaqqfhqQPPPVPVQPTQILQNPNRLSAAR--VGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPII 346
|
....*...
gi 21357827 372 AVTSPLNN 379
Cdd:pfam09770 347 THPQQLAQ 354
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
243-433 |
1.51e-04 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.99 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 243 PTRQPTPQPAVALVQPVVEaTLVESIQPSAPQESPQY-PEQIRPKP-LPIFIPSEQGAQRPNSQQFAPGDRTTLQSPVMV 320
Cdd:NF033839 297 PGMQPSPQPEKKEVKPEPE-TPKPEVKPQLEKPKPEVkPQPEKPKPeVKPQLETPKPEVKPQPEKPKPEVKPQPEKPKPE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 321 LPPQVPQQRDVVSPQPDINTyrtTEAHPDHLNYPPS---EPQTPR---APSPAVQQLAVTSPLNNRYSEIYPAPVNPR-- 392
Cdd:NF033839 376 VKPQPETPKPEVKPQPEKPK---PEVKPQPEKPKPEvkpQPEKPKpevKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKpe 452
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 21357827 393 VSEELRNQMPwsytsmvtKPPPPPRKPQLQVQIYPQIPEPD 433
Cdd:NF033839 453 VKPQPETPKP--------EVKPQPEKPKPEVKPQPEKPKPD 485
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
239-380 |
3.95e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 39.37 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 239 RSQAPTRQPTPQPAVALVQPVVEATLVESiqpsAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQFAPGdRTTLQSPV 318
Cdd:NF040712 197 RPLATVPRLAREPADARPEEVEPAPAAEG----APATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPG-AAPAAEPD 271
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21357827 319 MVLPPQVPQQRDVVSPQPDintyrtTEAHPDHLNYPPSEPQTPRAPSPAVQQLAVTSPLNNR 380
Cdd:NF040712 272 EATRDAGEPPAPGAAETPE------AAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRR 327
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
224-348 |
2.27e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 49.71 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 224 SGIMAEQNAKSAALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPL--PIFIPSEQGAQRP 301
Cdd:PRK14951 368 AAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAapAAAPAAAPAAVAL 447
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 21357827 302 NSQQFAPGDRTTLQSPVMVLP-PQVPQQRDVVSPQPDINTYRTTEAHP 348
Cdd:PRK14951 448 APAPPAQAAPETVAIPVRVAPePAVASAAPAPAAAPAAARLTPTEEGD 495
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
222-432 |
2.52e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 50.08 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 222 SLSGIMAEQNAKSAALSRSQAPTRQPTPQPAV-----ALVQPVVEATLVESIQPSAPQESPQyPEQIRPKP------LPI 290
Cdd:PRK10263 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVasvdvPPAQPTVAWQPVPGPQTGEPVIAPA-PEGYPQQSqyaqpaVQY 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 291 FIPSEQGAQrPNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDhlnyppsePQTPRAPSPAVQ- 369
Cdd:PRK10263 394 NEPLQQPVQ-PQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEE--------QQSTFAPQSTYQt 464
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 370 QLAVTSPLNNRYSEIYPAPVNPR-------VSEELRNQMPWSYTSMVTKPPPPPRKPQLQVQIYPqIPEP 432
Cdd:PRK10263 465 EQTYQQPAAQEPLYQQPQPVEQQpvvepepVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQP-IPEP 533
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
221-379 |
4.88e-06 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 48.88 E-value: 4.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 221 LSLSGIMAEQNAKSAALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIpseqgAQR 300
Cdd:pfam09770 194 MSLEEVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTI-----LQR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 301 PNSQQFAPGDRTT---------LQSPVMVLPPQVPQQRDVVSPQPdiNTYRTTEAHPDHLNYPPSEPQTPRAPSPAVQQL 371
Cdd:pfam09770 269 PQSPQPDPAQPSIqpqaqqfhqQPPPVPVQPTQILQNPNRLSAAR--VGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPII 346
|
....*...
gi 21357827 372 AVTSPLNN 379
Cdd:pfam09770 347 THPQQLAQ 354
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
243-391 |
9.18e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 48.16 E-value: 9.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 243 PTRQPTPQPAValvQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQ----FAPGDRTTLQSPV 318
Cdd:PRK10263 747 PIVEPVQQPQQ---PVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQpqqpVAPQPQYQQPQQP 823
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21357827 319 MVLPPQVPQQRDVVSPQPdintyRTTEAHPDHLNYPPSEP-QTPRAPSPAVQQLavTSPlnnryseiyPAPVNP 391
Cdd:PRK10263 824 VAPQPQYQQPQQPVAPQP-----QDTLLHPLLMRNGDSRPlHKPTTPLPSLDLL--TPP---------PSEVEP 881
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
236-342 |
7.30e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 7.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 236 ALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQFAPGDRTTLQ 315
Cdd:PHA03247 2890 AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVP 2969
|
90 100
....*....|....*....|....*...
gi 21357827 316 SPVMVLPPQVPQQRDVV-SPQPDINTYR 342
Cdd:PHA03247 2970 GRVAVPRFRVPQPAPSReAPASSTPPLT 2997
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
243-433 |
1.51e-04 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.99 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 243 PTRQPTPQPAVALVQPVVEaTLVESIQPSAPQESPQY-PEQIRPKP-LPIFIPSEQGAQRPNSQQFAPGDRTTLQSPVMV 320
Cdd:NF033839 297 PGMQPSPQPEKKEVKPEPE-TPKPEVKPQLEKPKPEVkPQPEKPKPeVKPQLETPKPEVKPQPEKPKPEVKPQPEKPKPE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 321 LPPQVPQQRDVVSPQPDINTyrtTEAHPDHLNYPPS---EPQTPR---APSPAVQQLAVTSPLNNRYSEIYPAPVNPR-- 392
Cdd:NF033839 376 VKPQPETPKPEVKPQPEKPK---PEVKPQPEKPKPEvkpQPEKPKpevKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKpe 452
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 21357827 393 VSEELRNQMPwsytsmvtKPPPPPRKPQLQVQIYPQIPEPD 433
Cdd:NF033839 453 VKPQPETPKP--------EVKPQPEKPKPEVKPQPEKPKPD 485
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
238-402 |
2.73e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 43.49 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 238 SRSQAPTRQPTPQPAVALVQPV---------VEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQFAP 308
Cdd:pfam09770 168 KKAAAPAPAPQPAAQPASLPAPsrkmmsleeVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 309 GDRTTLQSPVMVLPP----QVPQQRDVVSPQPDIntyrTTEAHPDHLNYPPSEPQtpraPSPAVQQLAVTSPLNNRYSEI 384
Cdd:pfam09770 248 QQPQQPQQHPGQGHPvtilQRPQSPQPDPAQPSI----QPQAQQFHQQPPPVPVQ----PTQILQNPNRLSAARVGYPQN 319
|
170
....*....|....*...
gi 21357827 385 YPAPVNPRVSEELRNQMP 402
Cdd:pfam09770 320 PQPGVQPAPAHQAHRQQG 337
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
232-432 |
5.08e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.62 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 232 AKSAALSRSQAPT-RQPTPQPAVAlvqPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQgaqrPNSQQFAPGD 310
Cdd:PHA03247 2788 VASLSESRESLPSpWDPADPPAAV---LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL----PLGGSVAPGG 2860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 311 ----RTTLQSPV-MVLPPQVPQQRDVVSPQPDintyRTTEAHPdhlnYPPSEPQTPRAPSPAVQqlavtsPLNNRYSEIY 385
Cdd:PHA03247 2861 dvrrRPPSRSPAaKPAAPARPPVRRLARPAVS----RSTESFA----LPPDQPERPPQPQAPPP------PQPQPQPPPP 2926
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 21357827 386 PAPvNPRVSEELRNQMPWSYTSmvtkppppprKPQLQVQIYPQIPEP 432
Cdd:PHA03247 2927 PQP-QPPPPPPPRPQPPLAPTT----------DPAGAGEPSGAVPQP 2962
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
229-336 |
7.96e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.99 E-value: 7.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 229 EQNAKSAALSRSQAPTRQPTPQP--AVALVQPVVEATLVESI-QPSAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQ 305
Cdd:PRK10263 766 QQPQQPVAPQPQYQQPQQPVAPQpqYQQPQQPVAPQPQYQQPqQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTL 845
|
90 100 110
....*....|....*....|....*....|....*.
gi 21357827 306 FAP-----GDRTTLQSPVMVLPpqvpqQRDVVSPQP 336
Cdd:PRK10263 846 LHPllmrnGDSRPLHKPTTPLP-----SLDLLTPPP 876
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
245-375 |
9.79e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 41.45 E-value: 9.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 245 RQPTPQPAVALVQPVVEATLVESIQPSAP-QESPQYPEQIRPKPL--------------PIFIPSEQGAQRPNSQQFAPG 309
Cdd:PLN03209 327 RVPPKESDAADGPKPVPTKPVTPEAPSPPiEEEPPQPKAVVPRPLspytayedlkpptsPIPTPPSSSPASSKSVDAVAK 406
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21357827 310 DRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDHlnYPPSEPqTPRAPSPAVQQLAVTS 375
Cdd:PLN03209 407 PAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDL--KPPTSP-SPTAPTGVSPSVSSTS 469
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
243-404 |
1.19e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 41.29 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 243 PTRQPTPQPAVALvQPVVEATLVESIQP--SAPQESPQY-PEQIRPKPLPIFIPSEQGAQRPNSQQFAPG---DRTTLQS 316
Cdd:pfam03154 251 PMTQPPPPSQVSP-QPLPQPSLHGQMPPmpHSLQTGPSHmQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGqsqQRIHTPP 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 317 PVMVLPPQVPQQRDVVSP----QPDINTYRTT----------EAHPDHLNYP-PSEPQTPRAPSPAVQQLAVTS------ 375
Cdd:pfam03154 330 SQSQLQSQQPPREQPLPPaplsMPHIKPPPTTpipqlpnpqsHKHPPHLSGPsPFQMNSNLPPPPALKPLSSLSthhpps 409
|
170 180 190
....*....|....*....|....*....|....*
gi 21357827 376 ----PLN--NRYSEIYPAPVNPRVSEELRNQMPWS 404
Cdd:pfam03154 410 ahppPLQlmPQSQQLPPPPAQPPVLTQSQSLPPPA 444
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
248-376 |
1.28e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.95 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 248 TPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPifipseqgAQRPNSQQFAPgdrttlqspvmvlPPQVPQ 327
Cdd:PRK14950 344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAP--------STRPKAAAAAN-------------IPPKEP 402
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 21357827 328 QRDvvSPQPDINTYRTTEAHPDHLnyPPSEPQTPRAPSPAVQQLAVTSP 376
Cdd:PRK14950 403 VRE--TATPPPVPPRPVAPPVPHT--PESAPKLTRAAIPVDEKPKYTPP 447
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
235-393 |
1.28e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 235 AALSRSQAPTRQ-PTPQPAVALVQPVVEAtlvESIQPSAPQES-----PQYPEQIRPKPLPIfIPSEQGAQRPNSQQFAP 308
Cdd:PHA03247 2556 PPAAPPAAPDRSvPPPRPAPRPSEPAVTS---RARRPDAPPQSarpraPVDDRGDPRGPAPP-SPLPPDTHAPDPPPPSP 2631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 309 GDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYR--TTEAHPDHLNYPPSEPQtPRAPSPAVQQLAVTS--PLNNRYSEI 384
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRraRRLGRAAQASSPPQRPR-RRAARPTVGSLTSLAdpPPPPPTPEP 2710
|
....*....
gi 21357827 385 YPAPVNPRV 393
Cdd:PHA03247 2711 APHALVSAT 2719
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
241-402 |
2.04e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.53 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 241 QAPTRQPTPQPAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQFAPGDR--TTLQSPV 318
Cdd:PRK14971 386 PAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKkiPVSKVSS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 319 MVLPPQVPQQRDVVSPQPDINTYRTTEAHP----DHLNYPPSE--PQTPRAPSPAVQQLAVTSP--LNNRYSEIypAPVN 390
Cdd:PRK14971 466 LGPSTLRPIQEKAEQATGNIKEAPTGTQKEifteEDLQYYWQEfaGTRPQEEKALKETMINCRPklLNGTTFEV--AVDN 543
|
170
....*....|..
gi 21357827 391 PRVSEELRNQMP 402
Cdd:PRK14971 544 ELQEKELTNLIP 555
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
224-404 |
2.04e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 224 SGIMAEQNAKSAALSRSQAPTRQPTPQPAVALVQPVVeatlVESIQPSAPQESPQYPEQIRPKPL---PIFIPSEQGAQR 300
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA----VPPPPASAPQQAPAVPLPETTSQLlaaRQQLQRAQGATK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 301 PNSQQFAPGDRT-TLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPdhLNYPPSEPQTPRAPSPAVQQlavtsplnn 379
Cdd:PRK07994 438 AKKSEPAAASRArPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNP--VEVKKEPVATPKALKKALEH--------- 506
|
170 180
....*....|....*....|....*
gi 21357827 380 rysEIYPAPVnPRVSEELRNQMPWS 404
Cdd:PRK07994 507 ---EKTPELA-AKLAAEAIERDPWA 527
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
254-399 |
2.71e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.95 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 254 ALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIpseQGAQRPNSQQFAPGDRTTLQSPVMVLPPQVPQQRdvvs 333
Cdd:PRK06995 50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLV---EHAKRLTAQREQLVARAAAPAAPEAQAPAAPAER---- 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21357827 334 pqpdintyrtTEAHPDHLNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIypapVNPRVSEELRN 399
Cdd:PRK06995 123 ----------AAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIERI----VNDTVMQELRS 174
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
228-395 |
3.39e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.86 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 228 AEQNAKSAALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQ--PSAPQESPQYPEQiRPKPLPIFIPSEQGAQRPNSQQ 305
Cdd:PRK12323 390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEalAAARQASARGPGG-APAPAPAPAAAPAAAARPAAAG 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 306 FAPGDRTTLQSPVMVLPPQVPQQRDVVSPQ--------PDINTYRTTEAHPDHLNYPPSEPQT----PRAPSPAVQQLAV 373
Cdd:PRK12323 469 PRPVAAAAAAAPARAAPAAAPAPADDDPPPweelppefASPAPAQPDAAPAGWVAESIPDPATadpdDAFETLAPAPAAA 548
|
170 180
....*....|....*....|..
gi 21357827 374 TSPLNNRYSEIYPAPVNPRVSE 395
Cdd:PRK12323 549 PAPRAAAATEPVVAPRPPRASA 570
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
230-364 |
3.74e-03 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 39.66 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 230 QNAKSA-ALSRSQAPTRQPTPQPAVALVQPVVEATLVESIQ-PSAPQESPQYPEQIRPKPL-------PIFIPSEQGAQR 300
Cdd:PHA03379 515 QVPGVAfAPVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQgPGETSGIVRVRERWRPAPWtpnpprsPSQMSVRDRLAR 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 301 PNSQQFApgdrttLQSPVMVLPPQVPQqrdvVSPQ--------PDINTY---------------RTTEAHPDHLNYPPSE 357
Cdd:PHA03379 595 LRAEAQP------YQASVEVQPPQLTQ----VSPQqpmeyplePEQQMFpgspfsqvadvmragGVPAMQPQYFDLPLQQ 664
|
....*..
gi 21357827 358 PQTPRAP 364
Cdd:PHA03379 665 PISQGAP 671
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
239-380 |
3.95e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 39.37 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 239 RSQAPTRQPTPQPAVALVQPVVEATLVESiqpsAPQESPQYPEQIRPKPLPIFIPSEQGAQRPNSQQFAPGdRTTLQSPV 318
Cdd:NF040712 197 RPLATVPRLAREPADARPEEVEPAPAAEG----APATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPG-AAPAAEPD 271
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 21357827 319 MVLPPQVPQQRDVVSPQPDintyrtTEAHPDHLNYPPSEPQTPRAPSPAVQQLAVTSPLNNR 380
Cdd:NF040712 272 EATRDAGEPPAPGAAETPE------AAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRR 327
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
232-432 |
4.84e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 232 AKSAALSRSQAPTRQP-TPQPAVALVQPVVEATLVESIQPSAPQESPqyPEQIRPKPLPIFIPSEQGAQRPNSQQFAPGD 310
Cdd:PHA03247 2724 GPAAARQASPALPAAPaPPAVPAGPATPGGPARPARPPTTAGPPAPA--PPAAPAAGPPRRLTRPAVASLSESRESLPSP 2801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 311 RTTLQSPVMVLPPQ--VPQQRDVVSPQPDintyrTTEAHPDHLNYPPSEPQTPRAPSPAVqqlAVTSPLNNRYSEIYP-- 386
Cdd:PHA03247 2802 WDPADPPAAVLAPAaaLPPAASPAGPLPP-----PTSAQPTAPPPPPGPPPPSLPLGGSV---APGGDVRRRPPSRSPaa 2873
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 21357827 387 ---APVNPRVSEELRNQMPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEP 432
Cdd:PHA03247 2874 kpaAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
237-367 |
5.01e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 39.33 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 237 LSRSQAPTRQPTPQ----PAVALVQPVVEATLVESIQPSaPQESPQYPEQIRPKPlpifipseqgAQRPNSQ---QFAPG 309
Cdd:PHA03269 17 LIIANLNTNIPIPElhtsAATQKPDPAPAPHQAASRAPD-PAVAPTSAASRKPDL----------AQAPTPAaseKFDPA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 21357827 310 DRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDHLNYPPSepQTPRAPSPA 367
Cdd:PHA03269 86 PAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTS--AASKKPDPA 141
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
243-376 |
5.41e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21357827 243 PTRQPTPQPAVALVQPVVEAT-LVESIQPSAPQESPqypeqiRPKPLPIFIPSEQGAQRPNSQQFAPGDRTTLQSPVMVL 321
Cdd:PHA03247 2648 PPERPRDDPAPGRVSRPRRARrLGRAAQASSPPQRP------RRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPL 2721
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 21357827 322 PPqVPQQRDVVSPQPDIN----TYRTTEAHPDHLNYPPSEPQTPRAPSPAVQQLAVTSP 376
Cdd:PHA03247 2722 PP-GPAAARQASPALPAApappAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
|
|
| |
