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Conserved domains on  [gi|320545958|ref|NP_648871|]
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uncharacterized protein Dmel_CG13062 [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Retinin_C super family cl04565
Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal ...
 40-95 1.99e-03

Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal region of the Drosophila Retinin protein. Conserved region is found towards the C-terminus of the member proteins.


The actual alignment was detected with superfamily member pfam04527:

Pssm-ID: 427994 [Multi-domain]  Cd Length: 63  Bit Score: 34.06  E-value: 1.99e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320545958   40 HVEPLHYHLPAAVSHQSSTVVHSvpHHIIKPVLLPTVVKTVVHPPIIK-AYHPAPII 95
Cdd:pfam04527   9 KVGAVVKSVPTAVSHQSSTQVHS--SAVVEPVVAPVVKTTVVSTPVVKtTYHAAPVV 63
 
Name Accession Description Interval E-value
Retinin_C pfam04527
Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal ...
 40-95 1.99e-03

Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal region of the Drosophila Retinin protein. Conserved region is found towards the C-terminus of the member proteins.


Pssm-ID: 427994 [Multi-domain]  Cd Length: 63  Bit Score: 34.06  E-value: 1.99e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320545958   40 HVEPLHYHLPAAVSHQSSTVVHSvpHHIIKPVLLPTVVKTVVHPPIIK-AYHPAPII 95
Cdd:pfam04527   9 KVGAVVKSVPTAVSHQSSTQVHS--SAVVEPVVAPVVKTTVVSTPVVKtTYHAAPVV 63
 
Name Accession Description Interval E-value
Retinin_C pfam04527
Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal ...
 40-95 1.99e-03

Drosophila Retinin like protein; Family of Drosophila proteins related to the C-terminal region of the Drosophila Retinin protein. Conserved region is found towards the C-terminus of the member proteins.


Pssm-ID: 427994 [Multi-domain]  Cd Length: 63  Bit Score: 34.06  E-value: 1.99e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 320545958   40 HVEPLHYHLPAAVSHQSSTVVHSvpHHIIKPVLLPTVVKTVVHPPIIK-AYHPAPII 95
Cdd:pfam04527   9 KVGAVVKSVPTAVSHQSSTQVHS--SAVVEPVVAPVVKTTVVSTPVVKtTYHAAPVV 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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