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Conserved domains on  [gi|21358617|ref|NP_650619|]
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sds22 [Drosophila melanogaster]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1903219)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 132-317 1.98e-30

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 114.50  E-value: 1.98e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 132 VYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEILSLQANRIVKIENL 211
Cdd:cd21340   7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 212 EKLANLRELYVSEN----------GVETIENLSENtkLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDI-ELL 280
Cdd:cd21340  87 ENLTNLEELHIENQrlppgekltfDPRSLAALSNS--LRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELlDLL 164

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 21358617 281 KVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKID 317
Cdd:cd21340 165 SSWPSLRELDLTGNPVCKKPKYRDKIILASKSLEVLD 201
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 44-208 1.42e-26

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 104.48  E-value: 1.42e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  44 LDLNHRRIEKLENFEPLTRIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENL 123
Cdd:cd21340   7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 124 DKLVKLEKVYFVSNRITQIENLD--------MLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLV-- 193
Cdd:cd21340  87 ENLTNLEELHIENQRLPPGEKLTfdprslaaLSNSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDLLss 166

                       170
                ....*....|....*..
gi 21358617 194 --NLEILSLQANRIVKI 208
Cdd:cd21340 167 wpSLRELDLTGNPVCKK 183
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 132-317 1.98e-30

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 114.50  E-value: 1.98e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 132 VYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEILSLQANRIVKIENL 211
Cdd:cd21340   7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 212 EKLANLRELYVSEN----------GVETIENLSENtkLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDI-ELL 280
Cdd:cd21340  87 ENLTNLEELHIENQrlppgekltfDPRSLAALSNS--LRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELlDLL 164

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 21358617 281 KVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKID 317
Cdd:cd21340 165 SSWPSLRELDLTGNPVCKKPKYRDKIILASKSLEVLD 201
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 44-208 1.42e-26

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 104.48  E-value: 1.42e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  44 LDLNHRRIEKLENFEPLTRIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENL 123
Cdd:cd21340   7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 124 DKLVKLEKVYFVSNRITQIENLD--------MLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLV-- 193
Cdd:cd21340  87 ENLTNLEELHIENQRLPPGEKLTfdprslaaLSNSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDLLss 166

                       170
                ....*....|....*..
gi 21358617 194 --NLEILSLQANRIVKI 208
Cdd:cd21340 167 wpSLRELDLTGNPVCKK 183
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
43-294 4.62e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 104.25  E-value: 4.62e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  43 ELDLNHRRIEKLENFEPLTRIERLFLRWNlikkiENLSSLKTLIELELYDNQITKI-ENLDDLPHLEVLDISFNRLTKI- 120
Cdd:COG4886  78 SLLLLSLLLLGLTDLGDLTNLTELDLSGN-----EELSNLTNLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLTDLp 152

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 121 ENLDKLVKLEKVYFVSNRITQI-ENLDMLTNLTMLELGDNKLKKI-ENIEMLVNLRQLFLGKNKIAKI-ENLDTLVNLEI 197
Cdd:COG4886 153 EPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDLpEPLANLTNLET 232

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 198 LSLQANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDI 277
Cdd:COG4886 233 LDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLE 312

                       250
                ....*....|....*..
gi 21358617 278 ELLKVNKALQTIYLEYN 294
Cdd:COG4886 313 LLILLLLLTTLLLLLLL 329
LRR_9 pfam14580
Leucine-rich repeat;
46-155 3.16e-06

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 46.68  E-value: 3.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617    46 LNHRRIEKLENFEPLTRIERLFLRWNLIKKIENL-SSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKI-ENL 123
Cdd:pfam14580   4 LTAELIEQSAQYTNPVRERELDLRGYKIPIIENLgATLDQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGL 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 21358617   124 DKLV-KLEKVYFVSNRITQIENLDMLTNLTMLE 155
Cdd:pfam14580  84 GEALpNLTELILTNNNLQELGDLDPLASLKKLT 116
LRR_9 pfam14580
Leucine-rich repeat;
137-220 2.07e-05

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 44.37  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   137 NRITQIENLD-MLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKI-ENLD-TLVNLEILSLQANRIVKIENLEK 213
Cdd:pfam14580  29 YKIPIIENLGaTLDQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGLGeALPNLTELILTNNNLQELGDLDP 108


                  ....*..
gi 21358617   214 LANLREL 220
Cdd:pfam14580 109 LASLKKL 115
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 76-185 5.08e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 44.78  E-value: 5.08e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  76 IENLSSLKTLIELELYDNQITK------IENLDDLPHLEVLDISFNRLTK------IENLDKLVKLEKVYFVSNRITQ-- 141
Cdd:COG5238 257 AEALKNNTTVETLYLSGNQIGAegaialAKALQGNTTLTSLDLSVNRIGDegaialAEGLQGNKTLHTLNLAYNGIGAqg 336

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 21358617 142 ----IENLDMLTNLTMLELGDNKLKK------IENIEMLVNLRQLFLGKNKIAK 185
Cdd:COG5238 337 aialAKALQENTTLHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIGK 390
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 51-251 7.18e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.29  E-value: 7.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   51 IEKLENFEpltrIERLFLRwNLIKKI-ENLSSLKTLIELELYDNQITK--IENLDDLPHLEVLDISFNRLT-KIE----- 121
Cdd:PLN00113 304 VIQLQNLE----ILHLFSN-NFTGKIpVALTSLPRLQVLQLWSNKFSGeiPKNLGKHNNLTVLDLSTNNLTgEIPeglcs 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  122 --NLDKLV------------------KLEKVYFVSNRITQ--IENLDMLTNLTMLELGDNKLK-KIENIEM-LVNLRQLF 177
Cdd:PLN00113 379 sgNLFKLIlfsnslegeipkslgacrSLRRVRLQDNSFSGelPSEFTKLPLVYFLDISNNNLQgRINSRKWdMPSLQMLS 458

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21358617  178 LGKNKI-AKIENLDTLVNLEILSLQANRIVKI--ENLEKLANLRELYVSENGV--ETIENLSENTKLETLDLAKNRLKG 251
Cdd:PLN00113 459 LARNKFfGGLPDSFGSKRLENLDLSRNQFSGAvpRKLGSLSELMQLKLSENKLsgEIPDELSSCKKLVSLDLSHNQLSG 537
LRR_SD22 smart00365
Leucine-rich repeat, SDS22-like subfamily;
148-168 8.62e-03

Leucine-rich repeat, SDS22-like subfamily;


Pssm-ID: 197684  Cd Length: 22  Bit Score: 33.40  E-value: 8.62e-03
                           10        20
                   ....*....|....*....|.
gi 21358617    148 LTNLTMLELGDNKLKKIENIE 168
Cdd:smart00365   1 LTNLEELDLGDNKIKKIENLD 21
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 132-317 1.98e-30

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 114.50  E-value: 1.98e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 132 VYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEILSLQANRIVKIENL 211
Cdd:cd21340   7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 212 EKLANLRELYVSEN----------GVETIENLSENtkLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDI-ELL 280
Cdd:cd21340  87 ENLTNLEELHIENQrlppgekltfDPRSLAALSNS--LRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELlDLL 164

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 21358617 281 KVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKID 317
Cdd:cd21340 165 SSWPSLRELDLTGNPVCKKPKYRDKIILASKSLEVLD 201
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 60-247 1.70e-28

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 109.49  E-value: 1.70e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  60 LTRIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRI 139
Cdd:cd21340   1 LKRITHLYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRI 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 140 TQIENLDMLTNLTMLELGDNKLKKIEniemlvnlrQLFLGKNKIAKIENldtlvNLEILSLQANRIVKIENLEKLANLRE 219
Cdd:cd21340  81 SVVEGLENLTNLEELHIENQRLPPGE---------KLTFDPRSLAALSN-----SLRVLNISGNNIDSLEPLAPLRNLEQ 146

                       170       180       190
                ....*....|....*....|....*....|..
gi 21358617 220 LYVSENGVETIEN----LSENTKLETLDLAKN 247
Cdd:cd21340 147 LDASNNQISDLEElldlLSSWPSLRELDLTGN 178
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 44-208 1.42e-26

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 104.48  E-value: 1.42e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  44 LDLNHRRIEKLENFEPLTRIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENL 123
Cdd:cd21340   7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 124 DKLVKLEKVYFVSNRITQIENLD--------MLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLV-- 193
Cdd:cd21340  87 ENLTNLEELHIENQRLPPGEKLTfdprslaaLSNSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLDLLss 166

                       170
                ....*....|....*..
gi 21358617 194 --NLEILSLQANRIVKI 208
Cdd:cd21340 167 wpSLRELDLTGNPVCKK 183
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
43-294 4.62e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 104.25  E-value: 4.62e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  43 ELDLNHRRIEKLENFEPLTRIERLFLRWNlikkiENLSSLKTLIELELYDNQITKI-ENLDDLPHLEVLDISFNRLTKI- 120
Cdd:COG4886  78 SLLLLSLLLLGLTDLGDLTNLTELDLSGN-----EELSNLTNLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLTDLp 152

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 121 ENLDKLVKLEKVYFVSNRITQI-ENLDMLTNLTMLELGDNKLKKI-ENIEMLVNLRQLFLGKNKIAKI-ENLDTLVNLEI 197
Cdd:COG4886 153 EPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDLpEPLANLTNLET 232

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 198 LSLQANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDI 277
Cdd:COG4886 233 LDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLE 312

                       250
                ....*....|....*..
gi 21358617 278 ELLKVNKALQTIYLEYN 294
Cdd:COG4886 313 LLILLLLLTTLLLLLLL 329
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
43-288 1.44e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.67  E-value: 1.44e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  43 ELDLNHRRIEKL-ENFEPLTRIERLFLRWNLIKKI-ENLSSLKTLIELELYDNQITKI-ENLDDLPHLEVLDISFNRLTK 119
Cdd:COG4886 140 ELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTD 219

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 120 I-ENLDKLVKLEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIA--KIENLDTLVNLE 196
Cdd:COG4886 220 LpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTdlKLKELELLLGLN 299

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 197 ILSLQANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKLELLEELWLNHNGVDDWKD 276
Cdd:COG4886 300 SLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATL 379

                       250
                ....*....|..
gi 21358617 277 IELLKVNKALQT 288
Cdd:COG4886 380 LTLALLLLTLLL 391
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
43-268 2.26e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.13  E-value: 2.26e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  43 ELDLNHRRIEKL-ENFEPLTRIERLFLRWNLIKKI-ENLSSLKTLIELELYDNQITKI-ENLDDLPHLEVLDISFNRLTK 119
Cdd:COG4886 163 SLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDLpEPLANLTNLETLDLSNNQLTD 242

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 120 IENLDKLVKLEKVYFVSNRITQIENLDMLTNLTMLELGDNKLK--KIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEI 197
Cdd:COG4886 243 LPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTdlKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21358617 198 LSLQANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLKGIANLEKLELLEELWLNH 268
Cdd:COG4886 323 LLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLL 393
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
66-252 3.34e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 69.96  E-value: 3.34e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  66 LFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLekvyfvsnRITQIENL 145
Cdd:COG4886  38 LLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTEL--------DLSGNEEL 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 146 DMLTNLTMLELGDNKLKKI-ENIEMLVNLRQLFLGKNKIAKI-ENLDTLVNLEILSLQANRIVKI-ENLEKLANLRELYV 222
Cdd:COG4886 110 SNLTNLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDL 189

                       170       180       190
                ....*....|....*....|....*....|.
gi 21358617 223 SENGVETI-ENLSENTKLETLDLAKNRLKGI 252
Cdd:COG4886 190 SNNQITDLpEPLGNLTNLEELDLSGNQLTDL 220
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
70-252 8.05e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 56.48  E-value: 8.05e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  70 WNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIENLDMLT 149
Cdd:COG4886  17 LLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLT 96

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 150 NLTMLELGDNklkkiENIEMLVNLRQLFLGKNKIAKI-ENLDTLVNLEILSLQANRIVKI-ENLEKLANLRELYVSENGV 227
Cdd:COG4886  97 NLTELDLSGN-----EELSNLTNLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQL 171

                       170       180
                ....*....|....*....|....*.
gi 21358617 228 ETI-ENLSENTKLETLDLAKNRLKGI 252
Cdd:COG4886 172 TDLpEELGNLTNLKELDLSNNQITDL 197
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 142-250 3.13e-07

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 51.71  E-value: 3.13e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 142 IENLDMLTNLTMLELGDNKLKK------IENIEMLVNLRQLFLGKNKI------AKIENLDTLVNLEILSLQANRI---- 205
Cdd:COG5238 229 AEALKGNKSLTTLDLSNNQIGDegvialAEALKNNTTVETLYLSGNQIgaegaiALAKALQGNTTLTSLDLSVNRIgdeg 308

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 21358617 206 --VKIENLEKLANLRELYVSENGVET------IENLSENTKLETLDLAKNRLK 250
Cdd:COG5238 309 aiALAEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTTLHSLDLSDNQIG 361
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-252 3.60e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.47  E-value: 3.60e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  78 NLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIENLDMLTNLTMLELG 157
Cdd:COG4886   3 LLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617 158 DNKLKKIENIEMLVNLRQLFLGKNkiakiENLDTLVNLEILSLQANRIVKI-ENLEKLANLRELYVSENGVETI-ENLSE 235
Cdd:COG4886  83 SLLLLGLTDLGDLTNLTELDLSGN-----EELSNLTNLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGN 157

                       170
                ....*....|....*..
gi 21358617 236 NTKLETLDLAKNRLKGI 252
Cdd:COG4886 158 LTNLKSLDLSNNQLTDL 174
LRR_9 pfam14580
Leucine-rich repeat;
46-155 3.16e-06

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 46.68  E-value: 3.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617    46 LNHRRIEKLENFEPLTRIERLFLRWNLIKKIENL-SSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKI-ENL 123
Cdd:pfam14580   4 LTAELIEQSAQYTNPVRERELDLRGYKIPIIENLgATLDQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGL 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 21358617   124 DKLV-KLEKVYFVSNRITQIENLDMLTNLTMLE 155
Cdd:pfam14580  84 GEALpNLTELILTNNNLQELGDLDPLASLKKLT 116
LRR_9 pfam14580
Leucine-rich repeat;
137-220 2.07e-05

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 44.37  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   137 NRITQIENLD-MLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKI-ENLD-TLVNLEILSLQANRIVKIENLEK 213
Cdd:pfam14580  29 YKIPIIENLGaTLDQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGLGeALPNLTELILTNNNLQELGDLDP 108


                  ....*..
gi 21358617   214 LANLREL 220
Cdd:pfam14580 109 LASLKKL 115
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 76-185 5.08e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 44.78  E-value: 5.08e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  76 IENLSSLKTLIELELYDNQITK------IENLDDLPHLEVLDISFNRLTK------IENLDKLVKLEKVYFVSNRITQ-- 141
Cdd:COG5238 257 AEALKNNTTVETLYLSGNQIGAegaialAKALQGNTTLTSLDLSVNRIGDegaialAEGLQGNKTLHTLNLAYNGIGAqg 336

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 21358617 142 ----IENLDMLTNLTMLELGDNKLKK------IENIEMLVNLRQLFLGKNKIAK 185
Cdd:COG5238 337 aialAKALQENTTLHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIGK 390
LRR_9 pfam14580
Leucine-rich repeat;
174-317 9.74e-05

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 42.44  E-value: 9.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   174 RQLFLGKNKIAKIENLD-TLVNLEILSLQANRIVKIENLEKLANLRELYVSENGVETI-ENLSENT-KLETLDLAKNRLK 250
Cdd:pfam14580  22 RELDLRGYKIPIIENLGaTLDQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIgEGLGEALpNLTELILTNNNLQ 101

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21358617   251 GIAnleklelleelwlnhngvddwkDIELLKVNKALQTIYLEYNPLAKDVRYRSKLRDILPQLQKID 317
Cdd:pfam14580 102 ELG----------------------DLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLD 146
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 83-125 1.10e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.15  E-value: 1.10e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 21358617    83 KTLIELELYDNQITKIENLDDLPHLEVLDISFN-RLTKIENLDK 125
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
LRR_8 pfam13855
Leucine rich repeat;
61-117 4.57e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.89  E-value: 4.57e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21358617    61 TRIERLFLRWNLIKKI--ENLSSLKTLIELELYDNQITKIEN--LDDLPHLEVLDISFNRL 117
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLddGAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 105-146 1.18e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 36.07  E-value: 1.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 21358617   105 PHLEVLDISFNRLTKIENLDKLVKLEKVYFVSN-RITQIENLD 146
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLA 43
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 149-190 1.88e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 35.68  E-value: 1.88e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 21358617   149 TNLTMLELGDNKLKKIENIEMLVNLRQLFL-GKNKIAKIENLD 190
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLsGNNKITDLSDLA 43
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 172-216 3.70e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.91  E-value: 3.70e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 21358617   172 NLRQLFLGKNKIAKIENLDTLVNLEILSLQANRivKIENLEKLAN 216
Cdd:pfam12799   2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNN--KITDLSDLAN 44
LRR_8 pfam13855
Leucine rich repeat;
105-183 4.62e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.81  E-value: 4.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   105 PHLEVLDISFNRLTKIEnldklvkleKVYFVSnritqienldmLTNLTMLELGDNKLKKIENIEM--LVNLRQLFLGKNK 182
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLD---------DGAFKG-----------LSNLKVLDLSNNLLTTLSPGAFsgLPSLRYLDLSGNR 60


                  .
gi 21358617   183 I 183
Cdd:pfam13855  61 L 61
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 194-235 6.31e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.14  E-value: 6.31e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 21358617   194 NLEILSLQANRIVKIENLEKLANLRELYVSENG-VETIENLSE 235
Cdd:pfam12799   2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNNkITDLSDLAN 44
LRR_8 pfam13855
Leucine rich repeat;
194-249 6.40e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.42  E-value: 6.40e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   194 NLEILSLQANRIVKI--ENLEKLANLRELYVSENGVETIEN--LSENTKLETLDLAKNRL 249
Cdd:pfam13855   2 NLRSLDLSNNRLTSLddGAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 51-251 7.18e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.29  E-value: 7.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617   51 IEKLENFEpltrIERLFLRwNLIKKI-ENLSSLKTLIELELYDNQITK--IENLDDLPHLEVLDISFNRLT-KIE----- 121
Cdd:PLN00113 304 VIQLQNLE----ILHLFSN-NFTGKIpVALTSLPRLQVLQLWSNKFSGeiPKNLGKHNNLTVLDLSTNNLTgEIPeglcs 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21358617  122 --NLDKLV------------------KLEKVYFVSNRITQ--IENLDMLTNLTMLELGDNKLK-KIENIEM-LVNLRQLF 177
Cdd:PLN00113 379 sgNLFKLIlfsnslegeipkslgacrSLRRVRLQDNSFSGelPSEFTKLPLVYFLDISNNNLQgRINSRKWdMPSLQMLS 458

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 21358617  178 LGKNKI-AKIENLDTLVNLEILSLQANRIVKI--ENLEKLANLRELYVSENGV--ETIENLSENTKLETLDLAKNRLKG 251
Cdd:PLN00113 459 LARNKFfGGLPDSFGSKRLENLDLSRNQFSGAvpRKLGSLSELMQLKLSENKLsgEIPDELSSCKKLVSLDLSHNQLSG 537
LRR_SD22 smart00365
Leucine-rich repeat, SDS22-like subfamily;
148-168 8.62e-03

Leucine-rich repeat, SDS22-like subfamily;


Pssm-ID: 197684  Cd Length: 22  Bit Score: 33.40  E-value: 8.62e-03
                           10        20
                   ....*....|....*....|.
gi 21358617    148 LTNLTMLELGDNKLKKIENIE 168
Cdd:smart00365   1 LTNLEELDLGDNKIKKIENLD 21
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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