NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|24648547|ref|NP_650921|]
View 

uncharacterized protein Dmel_CG15696 [Drosophila melanogaster]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10441114)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0003677
PubMed:  21557080|26464018|27768937|1357790
SCOP:  4000291

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
95-144 6.36e-16

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 68.30  E-value: 6.36e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 24648547    95 RLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQN 50
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
95-144 6.36e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 68.30  E-value: 6.36e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 24648547    95 RLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQN 50
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 94-144 1.13e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 64.96  E-value: 1.13e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 24648547     94 GRLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQN 51
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 95-144 3.08e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 63.80  E-value: 3.08e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 24648547  95 RLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQN 50
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
90-144 1.00e-03

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 37.80  E-value: 1.00e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 24648547  90 KRTPGRLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:COG5576  47 GSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQN 101
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
95-144 6.36e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 68.30  E-value: 6.36e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 24648547    95 RLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQN 50
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 94-144 1.13e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 64.96  E-value: 1.13e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 24648547     94 GRLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQN 51
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 95-144 3.08e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 63.80  E-value: 3.08e-14
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 24648547  95 RLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:cd00086   1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQN 50
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
90-144 1.00e-03

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 37.80  E-value: 1.00e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 24648547  90 KRTPGRLPRIPFTPQQLQALENAYKESNYLSAEDANKLADSLELTNTRVKIWFQN 144
Cdd:COG5576  47 GSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQN 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH