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Conserved domains on  [gi|40254190|ref|NP_666194|]
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photoreceptor cilium actin regulator isoform 1 [Mus musculus]

Protein Classification

Retinal domain-containing protein( domain architecture ID 12173672)

Retinal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1255 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


:

Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1812.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190      1 MGCTPSHNVIVNSVAKSGIQFFKKPKAILPGCQWGSPKCPIPLLVQSSTFCDSGGELHLGERLVEETvSSSKKLQAMAEG 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQ-PSSRWNQTMAEG 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190     81 VRQLP--------KAMEGLIPESQT--FQVNKPQGHRATDISFRTEGSHGTQEVDFSGKESKENTPQETSKGNRESVCHQ 150
Cdd:pfam15449   80 LCQLTgdptsgkrKDMEGLIPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHR 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    151 PDSQDHCRQ---SATESKGRVDFPEPLVKAHQHAYAYLHTSLSRYEAIVRLVQQASQTWGLLRPMLNFLLLCFEEAGQLL 227
Cdd:pfam15449  160 SGKQGHCCQtilPAHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLL 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    228 SEISKDGDVLLQEVRGDLAWPLRKGEPWEQhPDLLQQLLQYTVSKLRALHGTVAALTGSFLEGSSSCLRSTAGHLEGKLS 307
Cdd:pfam15449  240 GEISKDGEVLLQEVREDLAWPLKKGEPQEQ-PDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLS 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    308 TKRGIDECLLRALGQLESLTSSHGDAGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQVEARP 387
Cdd:pfam15449  319 TKRGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARL 398

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    388 SGHAWQEGPYWTGSDRPQDCPLSSPRIAKVQPAVQDEARSASTSGAGAEAVTSGPSEAAESLPWDSLGAEIPVRTPLSRS 467
Cdd:pfam15449  399 SGHAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSKG 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    468 SGLTDAPSLSEEE-DCSPEEEDELSSTDLHPEPQKALPSRPRSSPDTRESLFQPYSKELRNPQAQEMILKMKEAISERIK 546
Cdd:pfam15449  479 SRLMDTPSLSEDEdSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIK 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    547 FVPEPSRPQDWTEEEEGGTVVPPRPRSVSGSRGGPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSRRLEVFYALGATR 626
Cdd:pfam15449  559 FVPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKR 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    627 QGQSRERCLPSRASVLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQKGSPCFDGEQPCQGKAEKLPNAIFCGK 706
Cdd:pfam15449  639 QGQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGE 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    707 KSGRAPRDNERDIRACPTRPSVKTLIETFSPTESLRMPRNCRNLGSSPCLRKWGVPAMPPRFPIYRGLAPLYSKPQISPA 786
Cdd:pfam15449  719 KASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPA 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    787 AG---------WRPSAP-FPSLPLAEVSESEDISGDVEEDLENLPPPPLEVLMDKSFAALECPECSQPAGSSLEETLLPG 856
Cdd:pfam15449  799 AGreslkvgpgWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESSKPAGSSPEGTPVPG 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    857 LQEASHPKRTWVSPRLKASMSPMDLLPSKGSGSSPRLHSTRSGSTRIVGDSRKLTLDLNSKQTASPSSEAKSRAQIQARA 936
Cdd:pfam15449  879 LGEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQA 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    937 ETIAGFSKQHQKAIPWHHTNPTPGQSRTLEPSLARFSRDPHSSEASRKGPERSLPRVRKASPQRAQWASQGDRRLQSLPS 1016
Cdd:pfam15449  959 EEAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPS 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1017 SHGPSQPGLPAVL---------SSPSPPLSPRTLSPPATRKTTSPPCQHPQSNPAP---------GSPPVRRTETNTPSS 1078
Cdd:pfam15449 1039 SHRPAQPSLPTVQrspspplspRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSS 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1079 ASCSSPSVSPSRGSKDSIHSEDSEATTAKASRNTCSIFYPAATSLFEAKSSSSTSHPQMLPEPGGLLRTPTGGWRGSSGQ 1158
Cdd:pfam15449 1119 GPSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSSLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGP 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1159 RLRADSQKRTVLNALNPLPFVRRTASDRQRQQGDQLQQsrSDWEFHSCQNS-SSSSSSEENPKQELPPWNNSRVPELQGS 1237
Cdd:pfam15449 1199 RLRADSQRRTALCALNPQPFVRRTASDRRPGVRLQLPA--SGATGTASESQlSQSSSSEESPKKDTEPWSSPCAPELKGS 1276

                         1290
                   ....*....|....*...
gi 40254190   1238 StKRASPLELCVLGHGLQ 1255
Cdd:pfam15449 1277 S-RWASPPELCVLGHGLQ 1293
 
Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1255 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1812.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190      1 MGCTPSHNVIVNSVAKSGIQFFKKPKAILPGCQWGSPKCPIPLLVQSSTFCDSGGELHLGERLVEETvSSSKKLQAMAEG 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQ-PSSRWNQTMAEG 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190     81 VRQLP--------KAMEGLIPESQT--FQVNKPQGHRATDISFRTEGSHGTQEVDFSGKESKENTPQETSKGNRESVCHQ 150
Cdd:pfam15449   80 LCQLTgdptsgkrKDMEGLIPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHR 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    151 PDSQDHCRQ---SATESKGRVDFPEPLVKAHQHAYAYLHTSLSRYEAIVRLVQQASQTWGLLRPMLNFLLLCFEEAGQLL 227
Cdd:pfam15449  160 SGKQGHCCQtilPAHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLL 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    228 SEISKDGDVLLQEVRGDLAWPLRKGEPWEQhPDLLQQLLQYTVSKLRALHGTVAALTGSFLEGSSSCLRSTAGHLEGKLS 307
Cdd:pfam15449  240 GEISKDGEVLLQEVREDLAWPLKKGEPQEQ-PDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLS 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    308 TKRGIDECLLRALGQLESLTSSHGDAGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQVEARP 387
Cdd:pfam15449  319 TKRGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARL 398

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    388 SGHAWQEGPYWTGSDRPQDCPLSSPRIAKVQPAVQDEARSASTSGAGAEAVTSGPSEAAESLPWDSLGAEIPVRTPLSRS 467
Cdd:pfam15449  399 SGHAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSKG 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    468 SGLTDAPSLSEEE-DCSPEEEDELSSTDLHPEPQKALPSRPRSSPDTRESLFQPYSKELRNPQAQEMILKMKEAISERIK 546
Cdd:pfam15449  479 SRLMDTPSLSEDEdSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIK 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    547 FVPEPSRPQDWTEEEEGGTVVPPRPRSVSGSRGGPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSRRLEVFYALGATR 626
Cdd:pfam15449  559 FVPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKR 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    627 QGQSRERCLPSRASVLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQKGSPCFDGEQPCQGKAEKLPNAIFCGK 706
Cdd:pfam15449  639 QGQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGE 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    707 KSGRAPRDNERDIRACPTRPSVKTLIETFSPTESLRMPRNCRNLGSSPCLRKWGVPAMPPRFPIYRGLAPLYSKPQISPA 786
Cdd:pfam15449  719 KASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPA 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    787 AG---------WRPSAP-FPSLPLAEVSESEDISGDVEEDLENLPPPPLEVLMDKSFAALECPECSQPAGSSLEETLLPG 856
Cdd:pfam15449  799 AGreslkvgpgWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESSKPAGSSPEGTPVPG 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    857 LQEASHPKRTWVSPRLKASMSPMDLLPSKGSGSSPRLHSTRSGSTRIVGDSRKLTLDLNSKQTASPSSEAKSRAQIQARA 936
Cdd:pfam15449  879 LGEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQA 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    937 ETIAGFSKQHQKAIPWHHTNPTPGQSRTLEPSLARFSRDPHSSEASRKGPERSLPRVRKASPQRAQWASQGDRRLQSLPS 1016
Cdd:pfam15449  959 EEAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPS 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1017 SHGPSQPGLPAVL---------SSPSPPLSPRTLSPPATRKTTSPPCQHPQSNPAP---------GSPPVRRTETNTPSS 1078
Cdd:pfam15449 1039 SHRPAQPSLPTVQrspspplspRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSS 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1079 ASCSSPSVSPSRGSKDSIHSEDSEATTAKASRNTCSIFYPAATSLFEAKSSSSTSHPQMLPEPGGLLRTPTGGWRGSSGQ 1158
Cdd:pfam15449 1119 GPSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSSLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGP 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1159 RLRADSQKRTVLNALNPLPFVRRTASDRQRQQGDQLQQsrSDWEFHSCQNS-SSSSSSEENPKQELPPWNNSRVPELQGS 1237
Cdd:pfam15449 1199 RLRADSQRRTALCALNPQPFVRRTASDRRPGVRLQLPA--SGATGTASESQlSQSSSSEESPKKDTEPWSSPCAPELKGS 1276

                         1290
                   ....*....|....*...
gi 40254190   1238 StKRASPLELCVLGHGLQ 1255
Cdd:pfam15449 1277 S-RWASPPELCVLGHGLQ 1293
PHA03247 PHA03247
large tegument protein UL36; Provisional
 708-1177 1.59e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   708 SGRAPRDNERDIRACPTRPSVKTLIETFSPTESLRMPR-----NCRNLGSSPCLRKWGVPAMPPRFPIYRGLAPLYSKPQ 782
Cdd:PHA03247 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAanepdPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQA 2676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   783 ISPAAGWRPSAPFPSL-PLAEVSESEDisgdveedlenlPPPPLEVLMDKSFAALECPECSQPAGSSLeetllPGLQEAS 861
Cdd:PHA03247 2677 SSPPQRPRRRAARPTVgSLTSLADPPP------------PPPTPEPAPHALVSATPLPPGPAAARQAS-----PALPAAP 2739

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   862 HPKRTWVSPRLKASMSPMDLLPSKGSGSSPRLHSTR-SGSTRIVGDSRKLTLDLNSKQTASPSSEAKSRAQIQARAETIA 940
Cdd:PHA03247 2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPaAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   941 GFSKQHQKAIPWHHTNPT--PGQSRTLEPSLARFSRDPHSSEASRKGPERSLPRVRKASPQ-RAQWASQGDRRLQSLPSS 1017
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTapPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARpPVRRLARPAVSRSTESFA 2899

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190  1018 HGPSQPGLPAVLSSPSPPLSPRTLSPPATRKTTSPPCQHPQSNPAPGSPPVRRTETNTPSSASCSSPSVSPSRGSKDSIH 1097
Cdd:PHA03247 2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190  1098 SEDSEATTAKASrnTCSIFYPAATSLFEAKSSSSTSHPQMLPEPGGLLRT--PTGGWRGSSGQRLRADSQKRTVLNALNP 1175
Cdd:PHA03247 2980 PQPAPSREAPAS--STPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTlwPPDDTEDSDADSLFDSDSERSDLEALDP 3057


                  ..
gi 40254190  1176 LP 1177
Cdd:PHA03247 3058 LP 3059
 
Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1255 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1812.06  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190      1 MGCTPSHNVIVNSVAKSGIQFFKKPKAILPGCQWGSPKCPIPLLVQSSTFCDSGGELHLGERLVEETvSSSKKLQAMAEG 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQ-PSSRWNQTMAEG 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190     81 VRQLP--------KAMEGLIPESQT--FQVNKPQGHRATDISFRTEGSHGTQEVDFSGKESKENTPQETSKGNRESVCHQ 150
Cdd:pfam15449   80 LCQLTgdptsgkrKDMEGLIPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHR 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    151 PDSQDHCRQ---SATESKGRVDFPEPLVKAHQHAYAYLHTSLSRYEAIVRLVQQASQTWGLLRPMLNFLLLCFEEAGQLL 227
Cdd:pfam15449  160 SGKQGHCCQtilPAHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLL 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    228 SEISKDGDVLLQEVRGDLAWPLRKGEPWEQhPDLLQQLLQYTVSKLRALHGTVAALTGSFLEGSSSCLRSTAGHLEGKLS 307
Cdd:pfam15449  240 GEISKDGEVLLQEVREDLAWPLKKGEPQEQ-PDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLS 318

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    308 TKRGIDECLLRALGQLESLTSSHGDAGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQVEARP 387
Cdd:pfam15449  319 TKRGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARL 398

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    388 SGHAWQEGPYWTGSDRPQDCPLSSPRIAKVQPAVQDEARSASTSGAGAEAVTSGPSEAAESLPWDSLGAEIPVRTPLSRS 467
Cdd:pfam15449  399 SGHAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSKG 478

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    468 SGLTDAPSLSEEE-DCSPEEEDELSSTDLHPEPQKALPSRPRSSPDTRESLFQPYSKELRNPQAQEMILKMKEAISERIK 546
Cdd:pfam15449  479 SRLMDTPSLSEDEdSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIK 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    547 FVPEPSRPQDWTEEEEGGTVVPPRPRSVSGSRGGPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSRRLEVFYALGATR 626
Cdd:pfam15449  559 FVPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKR 638

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    627 QGQSRERCLPSRASVLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQKGSPCFDGEQPCQGKAEKLPNAIFCGK 706
Cdd:pfam15449  639 QGQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGE 718

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    707 KSGRAPRDNERDIRACPTRPSVKTLIETFSPTESLRMPRNCRNLGSSPCLRKWGVPAMPPRFPIYRGLAPLYSKPQISPA 786
Cdd:pfam15449  719 KASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPA 798

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    787 AG---------WRPSAP-FPSLPLAEVSESEDISGDVEEDLENLPPPPLEVLMDKSFAALECPECSQPAGSSLEETLLPG 856
Cdd:pfam15449  799 AGreslkvgpgWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESSKPAGSSPEGTPVPG 878

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    857 LQEASHPKRTWVSPRLKASMSPMDLLPSKGSGSSPRLHSTRSGSTRIVGDSRKLTLDLNSKQTASPSSEAKSRAQIQARA 936
Cdd:pfam15449  879 LGEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQA 958

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190    937 ETIAGFSKQHQKAIPWHHTNPTPGQSRTLEPSLARFSRDPHSSEASRKGPERSLPRVRKASPQRAQWASQGDRRLQSLPS 1016
Cdd:pfam15449  959 EEAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPS 1038

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1017 SHGPSQPGLPAVL---------SSPSPPLSPRTLSPPATRKTTSPPCQHPQSNPAP---------GSPPVRRTETNTPSS 1078
Cdd:pfam15449 1039 SHRPAQPSLPTVQrspspplspRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSS 1118

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1079 ASCSSPSVSPSRGSKDSIHSEDSEATTAKASRNTCSIFYPAATSLFEAKSSSSTSHPQMLPEPGGLLRTPTGGWRGSSGQ 1158
Cdd:pfam15449 1119 GPSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSSLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGP 1198

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   1159 RLRADSQKRTVLNALNPLPFVRRTASDRQRQQGDQLQQsrSDWEFHSCQNS-SSSSSSEENPKQELPPWNNSRVPELQGS 1237
Cdd:pfam15449 1199 RLRADSQRRTALCALNPQPFVRRTASDRRPGVRLQLPA--SGATGTASESQlSQSSSSEESPKKDTEPWSSPCAPELKGS 1276

                         1290
                   ....*....|....*...
gi 40254190   1238 StKRASPLELCVLGHGLQ 1255
Cdd:pfam15449 1277 S-RWASPPELCVLGHGLQ 1293
PHA03247 PHA03247
large tegument protein UL36; Provisional
 708-1177 1.59e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   708 SGRAPRDNERDIRACPTRPSVKTLIETFSPTESLRMPR-----NCRNLGSSPCLRKWGVPAMPPRFPIYRGLAPLYSKPQ 782
Cdd:PHA03247 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAanepdPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQA 2676

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   783 ISPAAGWRPSAPFPSL-PLAEVSESEDisgdveedlenlPPPPLEVLMDKSFAALECPECSQPAGSSLeetllPGLQEAS 861
Cdd:PHA03247 2677 SSPPQRPRRRAARPTVgSLTSLADPPP------------PPPTPEPAPHALVSATPLPPGPAAARQAS-----PALPAAP 2739

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   862 HPKRTWVSPRLKASMSPMDLLPSKGSGSSPRLHSTR-SGSTRIVGDSRKLTLDLNSKQTASPSSEAKSRAQIQARAETIA 940
Cdd:PHA03247 2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPaAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   941 GFSKQHQKAIPWHHTNPT--PGQSRTLEPSLARFSRDPHSSEASRKGPERSLPRVRKASPQ-RAQWASQGDRRLQSLPSS 1017
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTapPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARpPVRRLARPAVSRSTESFA 2899

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190  1018 HGPSQPGLPAVLSSPSPPLSPRTLSPPATRKTTSPPCQHPQSNPAPGSPPVRRTETNTPSSASCSSPSVSPSRGSKDSIH 1097
Cdd:PHA03247 2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190  1098 SEDSEATTAKASrnTCSIFYPAATSLFEAKSSSSTSHPQMLPEPGGLLRT--PTGGWRGSSGQRLRADSQKRTVLNALNP 1175
Cdd:PHA03247 2980 PQPAPSREAPAS--STPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTlwPPDDTEDSDADSLFDSDSERSDLEALDP 3057


                  ..
gi 40254190  1176 LP 1177
Cdd:PHA03247 3058 LP 3059
PHA03247 PHA03247
large tegument protein UL36; Provisional
 762-1070 3.12e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 3.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   762 PAMPPRFPIYRGLAPLYSKPQISPAAG---WRPSAP-FPSLPLAEVseseDISGDVEEDLENLPPPPLEVLMDKSfaale 837
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPAVTsraRRPDAPpQSARPRAPV----DDRGDPRGPAPPSPLPPDTHAPDPP----- 2627

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   838 cPECSQPAGSSLEETLLPGLQEASHPKRTWVSPRLKASMSPMDLLPSKGSGSSPRlHSTRSGSTRIVGDSRKLTLDLNSK 917
Cdd:PHA03247 2628 -PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQ-RPRRRAARPTVGSLTSLADPPPPP 2705

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   918 QTASPSSEAKSRAqiqARAETIAGFSKQHQKAIPWHHTNPTPGQSRTLEPSLARFSRDPHSSEASRKGPerslPRVRKAS 997
Cdd:PHA03247 2706 PTPEPAPHALVSA---TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP----PAAPAAG 2778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40254190   998 PQRAQWASQGDRRLQSLPSSHGPSQPGLPAVLSSPSPPLSPRT------LSPPATRKTTSPPCQHPQSNP--------AP 1063
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAaspagpLPPPTSAQPTAPPPPPGPPPPslplggsvAP 2858


                  ....*..
gi 40254190  1064 GSPPVRR 1070
Cdd:PHA03247 2859 GGDVRRR 2865
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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