|
Name |
Accession |
Description |
Interval |
E-value |
| TBC |
smart00164 |
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ... |
113-320 |
7.70e-72 |
|
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Pssm-ID: 214540 [Multi-domain] Cd Length: 216 Bit Score: 234.51 E-value: 7.70e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 113 VRRGIPHHFRAIVWQQLSGASD----GDKKQYAEYIKATSACEKV----IRRDIARTYPEVEFFKEKDGPGQEALFNVIK 184
Cdd:smart00164 1 VRKGVPPSLRGVVWKLLLNAQPmdtsADKDLYSRLLKETAPDDKSivhqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 185 AYSLHDREVGYCQGSGFIVGLLLMQMP-EEEAFAVLVQIMQQHRMRhMFKPSMSELGLCMYQLENLVQEQIPDMHIHFQQ 263
Cdd:smart00164 81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 62484427 264 QGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEFIFKVALALLLTGKDTLL 320
Cdd:smart00164 160 LGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
|
|
| RabGAP-TBC |
pfam00566 |
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ... |
154-320 |
2.99e-53 |
|
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
Pssm-ID: 459855 Cd Length: 178 Bit Score: 182.45 E-value: 2.99e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 154 IRRDIARTYPEVEFFKekDGPGQEALFNVIKAYSLHDREVGYCQGSGFIVGLLLMQ-MPEEEAFAVLVQIMQQHRMRHMF 232
Cdd:pfam00566 12 IEKDVPRTFPHSFFFD--NGPGQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVyLDEEDAFWCFVSLLENYLLRDFY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 233 KPSMSELGLCMYQLENLVQEQIPDMHIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEF-IFKVALAL 311
Cdd:pfam00566 90 TPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFvLFRVALAI 169
|
....*....
gi 62484427 312 LLTGKDTLL 320
Cdd:pfam00566 170 LKRFREELL 178
|
|
| COG5210 |
COG5210 |
GTPase-activating protein [General function prediction only]; |
109-328 |
5.53e-42 |
|
GTPase-activating protein [General function prediction only];
Pssm-ID: 227535 [Multi-domain] Cd Length: 496 Bit Score: 160.35 E-value: 5.53e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 109 VSELVRRGIPHHFRAIVWQQLSGASDGDKKQYAEYIKATSACEKV----------IRRDIARTYPEVEFFKEKDGPGQEA 178
Cdd:COG5210 205 LRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAkiptqeiisqIEKDLSRTFPDNSLFQTEISIRAEN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 179 LFNVIKAYSLHDREVGYCQGSGFIVGLLLMQMPEEE-AFAVLVQIMQQHRMRHMFKPSMSELGLCMYQLENLVQEQIPDM 257
Cdd:COG5210 285 LRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEqAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPEL 364
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 62484427 258 HIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEFIFKVALALLLTGKDTLLCLDMEAML 328
Cdd:COG5210 365 YEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELL 435
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
358-761 |
8.26e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 8.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKE------YQDLKKKEQEEMAELRRLRRENC------------LLKQRNELLEAESAELADRLVRGQVSRAEE 419
Cdd:COG1196 200 RQLEPLERQaekaerYRELKEELKELEAELLLLKLRELeaeleeleaeleELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 420 EETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELcmKEEALKQRDEmvscLLEEL 499
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE--LEELEEELEE----AEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 500 VKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnsvahlqdeliasklREAEASLSLKDLKQRVQELSSQWQRQLA 579
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAE-------------------ELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 580 ENQRSESERTTNAvdstpkklltnffdsskssEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQ 659
Cdd:COG1196 415 RLERLEEELEELE-------------------EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 660 DEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKdelmnvKIKFTEQSQTVAELKQEISRLETKNSEMLAEGEL 739
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL------LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
410 420
....*....|....*....|..
gi 62484427 740 RANLDDSDKVRDLQDRLADMKA 761
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKA 571
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
449-769 |
1.92e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 1.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 449 EEVRGLSLRLQ----ENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVS----CLLEELVKVRQGLAESEDQIRNLKAKV 520
Cdd:TIGR02169 674 AELQRLRERLEglkrELSSLQSELRRIENRLDELSQELSDASRKIGEIEkeieQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 521 EELEEDKKTLRETTPDNsvahlqdELIASKLREAEASLSLKDLKQRVQELSSQWQRQlaENQRSESERTTNAVDSTPKKL 600
Cdd:TIGR02169 754 ENVKSELKELEARIEEL-------EEDLHKLEEALNDLEARLSHSRIPEIQAELSKL--EEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 601 LTNFFDSSKSSEHTQKL-------------EEELMTTRIREMETltELKELRLKVMELETQ-------VQVSTNQLRRQD 660
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQridlkeqiksiekEIENLNGKKEELEE--ELEELEAALRDLESRlgdlkkeRDELEAQLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 661 EEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQS--QTVAELKQEISRLETKNseMLAEGE 738
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIRALEPVN--MLAIQE 980
|
330 340 350
....*....|....*....|....*....|.
gi 62484427 739 LRANLDDSDkvrDLQDRLADMKAELTALKSR 769
Cdd:TIGR02169 981 YEEVLKRLD---ELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
498-769 |
7.66e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 7.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 498 ELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRettpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQ 577
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELE-----EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 578 LAENQRSESERTTNAvdstpKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLR 657
Cdd:TIGR02168 753 SKELTELEAEIEELE-----ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 658 RQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLE---SRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMl 734
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELEALLNERASLEEALALLRSELEELSEELREL- 906
|
250 260 270
....*....|....*....|....*....|....*
gi 62484427 735 aEGELRANLDDSDKvrdLQDRLADMKAELTALKSR 769
Cdd:TIGR02168 907 -ESKRSELRRELEE---LREKLAQLELRLEGLEVR 937
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-671 |
7.92e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 7.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKkkeqeemAELRRLRREncLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:TIGR02168 206 ERQAEKAERYKELK-------AELRELELA--LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 LEVSHQLENANEEVRGLSLRLQENNVSIDS-NNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNL 516
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQIlRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 517 KAKVEELEEDKKTLRettpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERTTNAvdst 596
Cdd:TIGR02168 357 EAELEELEAELEELE-----SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL---- 427
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62484427 597 PKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELE 671
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
338-786 |
1.74e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 338 RVEADVEGFFNLAYSIKLNTKRMKKMEKEYQDLKKKEQEemaelrrLRRENCLLKQRNELLEaESAELADRLVRgqVSRA 417
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE-------LEKRLEELEERHELYE-EAKAKKEELER--LKKR 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 418 EEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQsSIDELCMKEEALKQRDEMVSCLLE 497
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK-GKCPVCGRELTEEHRKELLEEYTA 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 498 ELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVA----HLQDELIASKLREAEA-SLSLKDLKQRVQELSS 572
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqlkELEEKLKKYNLEELEKkAEEYEKLKEKLIKLKG 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 573 QWQRQLAENQR-----SESERTTNAVDSTPKKLltnffdssksSEHTQKLEEELMTTRIREMETLTELKELRLKVMELET 647
Cdd:PRK03918 540 EIKSLKKELEKleelkKKLAELEKKLDELEEEL----------AELLKELEELGFESVEELEERLKELEPFYNEYLELKD 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 648 QVQvstnQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRM-KDELMNVKIKFTEQSQTVAELKQEISRL 726
Cdd:PRK03918 610 AEK----ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEEL 685
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 62484427 727 ETKNSEMLAEGE-LRANLDDSDKVRDLQDRLADMKAELTALKSRGKFPGAKLRSSSIQSIE 786
Cdd:PRK03918 686 EKRREEIKKTLEkLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
356-769 |
2.55e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 2.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 356 NTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENcllKQRNELLEAESAELADRL--VRGQVSRAEEE-ETSYAIQTELMQ 432
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEK---EKELEEVLREINEISSELpeLREELEKLEKEvKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 433 LRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQ 512
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 513 IRNLKAKVEELEEDKKTLRETtpdnsvahlqdeliasKLREAEASLSLKDLKQRVQELssQWQRQLAENQRSESERTTNa 592
Cdd:PRK03918 323 INGIEERIKELEEKEERLEEL----------------KKKLKELEKRLEELEERHELY--EEAKAKKEELERLKKRLTG- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 593 vdSTPKKLLTNFFDSSKSSEHTQKLEEELmTTRIREMEtlTELKELRLKVMELETQVQVSTNQLRRQDEEHKKlkeELEM 672
Cdd:PRK03918 384 --LTPEKLEKELEELEKAKEEIEEEISKI-TARIGELK--KEIKELKKAIEELKKAKGKCPVCGRELTEEHRK---ELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 673 AVTRE-KDMSNKAREQQHRYSDLESRMK--DELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEgelranldDSDKV 749
Cdd:PRK03918 456 EYTAElKRIEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK--------KAEEY 527
|
410 420
....*....|....*....|
gi 62484427 750 RDLQDRLADMKAELTALKSR 769
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKE 547
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
385-768 |
3.15e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 3.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 385 RRENCLLKQRNEL--LEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENN 462
Cdd:TIGR02168 667 KTNSSILERRREIeeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 463 VSIDSNNSRQssidelcmkEEALKQRDEmvscLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETtpdnsvahl 542
Cdd:TIGR02168 747 ERIAQLSKEL---------TELEAEIEE----LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA--------- 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 543 qdeliaskLREAEASLSlkDLKQRVQELSSQWQRqlAENQRSESERTTNAVDSTPKKLltnffdssksSEHTQKLEEElm 622
Cdd:TIGR02168 805 --------LDELRAELT--LLNEEAANLRERLES--LERRIAATERRLEDLEEQIEEL----------SEDIESLAAE-- 860
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 623 ttrireMETLTELKElrlkvmELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKD-- 700
Cdd:TIGR02168 861 ------IEELEELIE------ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQle 928
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 701 --------ELMNVKIKFTEQSQTVAELKQEISRlETKNSEMLAEGELRA-----------NLDDSDKVRDLQDRLADMKA 761
Cdd:TIGR02168 929 lrleglevRIDNLQERLSEEYSLTLEEAEALEN-KIEDDEEEARRRLKRlenkikelgpvNLAAIEEYEELKERYDFLTA 1007
|
....*..
gi 62484427 762 ELTALKS 768
Cdd:TIGR02168 1008 QKEDLTE 1014
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
359-706 |
1.70e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 359 RMKKMEKEYQDLKKKEQEEMAELRRLRRENCllkqRNELLEAESAElaDRLVRGQVSRAEEEETSYAIQTELMQLRRSYL 438
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELK----LQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 439 EVSHQLENANEEVRGLSLRLQENnvsIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKA 518
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEK---EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 519 KVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEASLSLKDLKQRvQELSSQWQRQLAENQRSESERTTNAVDSTPK 598
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL-QEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 599 KLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREK 678
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340
....*....|....*....|....*...
gi 62484427 679 DMSNKAREQQHRysDLESRMKDELMNVK 706
Cdd:pfam02463 476 ETQLVKLQEQLE--LLLSRQKLEERSQK 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
443-769 |
3.26e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 3.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 443 QLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDElcMKEEALKQRDemvscLLEELVKVRQGL-----AESEDQIRNLK 517
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRR--EREKAERYQA-----LLKEKREYEGYEllkekEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 518 AKVEELEEDKKTLRETTPDNSvahLQDELIASKLREAEASLSLK------DLKQRVQELSSQwqRQLAENQRSESERTTN 591
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELE---KRLEEIEQLLEELNKKIKDLgeeeqlRVKEKIGELEAE--IASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 592 AVDSTPKKLltnFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELE 671
Cdd:TIGR02169 319 DAEERLAKL---EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 672 MaVTREKDMSNKAR-----EQQHRYSDLEsRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLA--EGELRANLD 744
Cdd:TIGR02169 396 K-LKREINELKRELdrlqeELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAdlSKYEQELYD 473
|
330 340
....*....|....*....|....*
gi 62484427 745 DSDKVRDLQDRLADMKAELTALKSR 769
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-743 |
3.60e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRsy 437
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK-- 1553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 levSHQLENAnEEVRglslRLQENNVSIDSNNSRQSSIDELCMKEEAlkqRDEMVSCLLEELVKVRQGLAESEDQIRNLK 517
Cdd:PTZ00121 1554 ---AEELKKA-EEKK----KAEEAKKAEEDKNMALRKAEEAKKAEEA---RIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 518 AKVEELEEDKKTLRETTPDNSvahlQDELIASKLREAEASLSLK--DLKQRVQElssqwQRQLAENQRSESERTTNAVDS 595
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEA----EEKKKAEELKKAEEENKIKaaEEAKKAEE-----DKKKAEEAKKAEEDEKKAAEA 1693
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 596 TPKKLltnffDSSKSSEHTQKLEEElmttRIREMETLTELKELRlkvmeletqvQVSTNQLRRQDEEHKKLKEELEMAVT 675
Cdd:PTZ00121 1694 LKKEA-----EEAKKAEELKKKEAE----EKKKAEELKKAEEEN----------KIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484427 676 REKDMSNKAREQQHRysdLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANL 743
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKK---AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNL 1819
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-757 |
6.87e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 497 EELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLrettpDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELssqwQR 576
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKEIAEL----RA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 577 QLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHtqkleeelmttrIREMETLTELKELRLKVMEletqvqvstnQL 656
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDA------------VRRLQYLKYLAPARREQAE----------EL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 657 RRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250 260
....*....|....*....|.
gi 62484427 737 GELRANLDDSDKVRDLQDRLA 757
Cdd:COG4942 236 AAAAAERTPAAGFAALKGKLP 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-700 |
9.07e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 9.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 353 IKLNTKRMKKME-------KEYQDLKKKEQEEMAELRRLR-------RENCLLKQRNELLEAESAELADRLVRGQVSRAE 418
Cdd:TIGR02168 679 IEELEEKIEELEekiaeleKALAELRKELEELEEELEQLRkeleelsRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 419 EEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNvsidsnnsrqSSIDELCMKEEALKqrdemvscllEE 498
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR----------EALDELRAELTLLN----------EE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 499 LVKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRVQelSSQWQRQL 578
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSE-----DIESLAAEIEELEELIEELESELEALLNERA--SLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 579 AENQRSESERTTNAVDSTPKKLLTnffDSSKSSEHTQKLEEELMTTRIREMETLTELKEL-RLKVMELETQVQVSTNQLR 657
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRR---ELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEE 968
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 62484427 658 RQDEEHKKLKEELE------MAVTREkdmsnkAREQQHRYSDLESRMKD 700
Cdd:TIGR02168 969 EARRRLKRLENKIKelgpvnLAAIEE------YEELKERYDFLTAQKED 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-583 |
1.32e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRS 436
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 437 YLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSI-DELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRN 515
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALlERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484427 516 LKAKVEELEEDKKTLRETTpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQR 583
Cdd:COG1196 454 LEEEEEALLELLAELLEEA--ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
350-572 |
8.49e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 8.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 350 AYSIKLNTKR--MKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQ 427
Cdd:TIGR02168 264 ELEEKLEELRleVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 428 TELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNV--------------SIDSNNSRQSSID-ELCMKEEALKQRDEMV 492
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEqletlrskvaqlelQIASLNNEIERLEaRLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 493 SCLLEELV-----KVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRV 567
Cdd:TIGR02168 424 EELLKKLEeaelkELQAELEELEEELEELQEELERLEEALEELRE-----ELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
....*
gi 62484427 568 QELSS 572
Cdd:TIGR02168 499 ENLEG 503
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
358-727 |
9.93e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.43 E-value: 9.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKKKEQEEMAelrrlrREnclLKQRNELLEAESAELADrlvrgqvsrAEEEETSYAIQTELMQLRRSY 437
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKA------RE---VERRRKLEEAEKARQAE---------MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 LEVSHQLENANEEVRglsLRLQENNVSIdsnnSRQSSIDELCMKEEalkQRDEMVSCLLEELVKVRQGLAESEDQIRNLK 517
Cdd:pfam17380 350 LERIRQEERKRELER---IRQEEIAMEI----SRMRELERLQMERQ---QKNERVRQELEAARKVKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 518 AKVEELEEDKKTLRETtpdnSVAHLQDEliasKLREAEaslslkdlKQRVQELSSQWQRQLAENQRSESERTTNAVDSTP 597
Cdd:pfam17380 420 VEMEQIRAEQEEARQR----EVRRLEEE----RAREME--------RVRLEEQERQQQVERLRQQEEERKRKKLELEKEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 598 KklltnffDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMElETQVQVSTNQLRRQDEEHKKLKEELEmavtRE 677
Cdd:pfam17380 484 R-------DRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEME-ERQKAIYEEERRREAEEERRKQQEME----ER 551
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 62484427 678 KDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLE 727
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEATTPITTIK 601
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
495-769 |
1.03e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 495 LLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQW 574
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRL-----ELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 575 QRQLAENQRSESERTTNAvdstpkklltnfFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTN 654
Cdd:COG1196 312 RELEERLEELEEELAELE------------EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 655 QLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEml 734
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-- 457
|
250 260 270
....*....|....*....|....*....|....*
gi 62484427 735 AEGELRANLDDSDKVRDLQDRLADMKAELTALKSR 769
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
354-766 |
1.94e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 354 KLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRenclLKQRNELLEAESAELADRLvrgqvSRAEEEETSYAIQTELMQL 433
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELREEL-----EKLEKLLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 434 RRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDemVSCLLEELVKVRQGLAESEDQI 513
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE--LQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 514 RNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAE------ASLSLKDLKQRVQEL------------SSQWQ 575
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAllallgLGGSLLSLILTIAGVlflvlgllallfLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 576 RQLAENQRSESERTTNAVDSTPKKLLTNFFDSskssehtQKLEEELMTTRIRE-METLTELKELRLKVMELETQVQVSTN 654
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELLAA-------LGLPPDLSPEELLElLDRIEELQELLREAEELEEELQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 655 QLRRQ---DEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQ-SQTVAELKQEISRLETKN 730
Cdd:COG4717 369 EQEIAallAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEElEEELEELEEELEELEEEL 448
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 62484427 731 SEMLAE-GELRA---NLDDSDKVRDLQDRLADMKAELTAL 766
Cdd:COG4717 449 EELREElAELEAeleQLEEDGELAELLQELEELKAELREL 488
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
357-763 |
1.95e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRS 436
Cdd:PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 437 YLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQ-----------RDEMVSCLLEE----LVK 501
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEdrerVEE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 502 VRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEA-SLSLKDLKQRVQELSS--QWQRQL 578
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEkRERAEELRERAAELEAeaEEKREA 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 579 AENQRSESERTTNAVDSTPKKLLTNffdssksSEHTQKLE--EELMTTRIREMETLTELKELRLKVMELETQvqvSTNQL 656
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAEL-------KERIESLEriRTLLAAIADAEDEIERLREKREALAELNDE---RRERL 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 657 RRQDEEHKKLKEELEMAVTREkdmsnkAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:PRK02224 630 AEKRERKRELEAEFDEARIEE------AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREAL 703
|
410 420
....*....|....*....|....*...
gi 62484427 737 GELRANLDD-SDKVRDLQDRLADMKAEL 763
Cdd:PRK02224 704 ENRVEALEAlYDEAEELESMYGDLRAEL 731
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
358-769 |
2.27e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 ---LEVSHQLENANEEVRGLSLRLQENNVSIDsnnsrqssIDELCMKEEALkqRDEMVSCLLEELV-KVRQGLAESEDQI 513
Cdd:COG1196 494 lllLEAEADYEGFLEGVKAALLLAGLRGLAGA--------VAVLIGVEAAY--EAALEAALAAALQnIVVEDDEVAAAAI 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 514 RNLKAK----VEELEEDKKTLRETTPDNSVAHLQDE---LIASKLREAEASLSLKDL----KQRVQELSSQWQRQLAENQ 582
Cdd:COG1196 564 EYLKAAkagrATFLPLDKIRARAALAAALARGAIGAavdLVASDLREADARYYVLGDtllgRTLVAARLEAALRRAVTLA 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 583 RSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELmttRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEE 662
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE---ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 663 HKKLKEELEMAVTREKdmsnkAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNseMLAEGELRAn 742
Cdd:COG1196 721 LEEEALEEQLEAEREE-----LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN--LLAIEEYEE- 792
|
410 420
....*....|....*....|....*..
gi 62484427 743 ldDSDKVRDLQDRLADMKAELTALKSR 769
Cdd:COG1196 793 --LEERYDFLSEQREDLEEARETLEEA 817
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
391-583 |
2.90e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 391 LKQRNELLEAESAELADRL--VRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSN 468
Cdd:COG3206 166 LELRREEARKALEFLEEQLpeLRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 469 NSRQSSIDElcmkEEALKQRDEMVSCLLEELVKVRQGLAE-----SED--QIRNLKAKVEELEEDKKTLRETTpdnsVAH 541
Cdd:COG3206 246 RAQLGSGPD----ALPELLQSPVIQQLRAQLAELEAELAElsaryTPNhpDVIALRAQIAALRAQLQQEAQRI----LAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 62484427 542 LQDELIASKLREAEASLSLKDLKQRVQELSSQwQRQLAENQR 583
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPEL-EAELRRLER 358
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
348-771 |
3.55e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 348 NLAYSIKLNTKRMKKMEKEYQ-------DLKKKEQEEMAELRRLRRENCLLKQRnelLEAESAELaDRLVRGQVSRAEEE 420
Cdd:pfam05483 300 DIKMSLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAKAAHSFVVTE---FEATTCSL-EELLRTEQQRLEKN 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 421 ETSYAIQTELMQLRRSYLEVSHQLENANE-EVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEAL----KQRDEMVSCL 495
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEvELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELifllQAREKEIHDL 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 496 LEELVKVRQGLAESEDQIRNLKAkveELEEDKKTLRETTPDNSVAHLQDELIASKlrEAEASLSLKDLKQRVQELSSQWQ 575
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEVEDLKT---ELEKEKLKNIELTAHCDKLLLENKELTQE--ASDMTLELKKHQEDIINCKKQEE 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 576 RQLA--ENQRSESERTTNAVDSTPKKLLtnffdsSKSSEHTQKLEEELMTTRIREMETLTELKELRLkvmeletqVQVST 653
Cdd:pfam05483 531 RMLKqiENLEEKEMNLRDELESVREEFI------QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI--------LENKC 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 654 NQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTvaeLKQEISRLETKNSEM 733
Cdd:pfam05483 597 NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDN---YQKEIEDKKISEEKL 673
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 62484427 734 LAEGE-LRANLDDSDKVRDLQDRLADMK-AELTALKSRGK 771
Cdd:pfam05483 674 LEEVEkAKAIADEAVKLQKEIDKRCQHKiAEMVALMEKHK 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
481-805 |
1.10e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 481 KEEALKQRDEMvsclLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKtlrettpdnsvahLQDELiasklREAEASLSL 560
Cdd:TIGR02168 174 RKETERKLERT----RENLDRLEDILNELERQLKSLERQAEKAERYKE-------------LKAEL-----RELELALLV 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 561 KDLKQRVQELSsQWQRQLAENQRSESERTTNAVdstpkklltnffdsskssehtqkleeelmttriremETLTELKELRL 640
Cdd:TIGR02168 232 LRLEELREELE-ELQEELKEAEEELEELTAELQ------------------------------------ELEEKLEELRL 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 641 KVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESR---MKDELMNVKIKFTEQSQTVA 717
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKLEELKEELE 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 718 ELKQEISRLETKNSEM-LAEGELRANLDD-SDKVRDLQDRLADMKAELTALKSRGKFPGAKL-RSSSIQSIESTEIDFND 794
Cdd:TIGR02168 355 SLEAELEELEAELEELeSRLEELEEQLETlRSKVAQLELQIASLNNEIERLEARLERLEDRReRLQQEIEELLKKLEEAE 434
|
330
....*....|.
gi 62484427 795 LNMVRRGSTEL 805
Cdd:TIGR02168 435 LKELQAELEEL 445
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
354-732 |
1.14e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 354 KLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAEladrlvrgqvsRAEEEETSYAIQTELMQL 433
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI-----------LRRQLEIKKKEQREKEEL 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 434 RRSYLEVSHQLENAneevrglsLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQI 513
Cdd:pfam02463 713 KKLKLEAEELLADR--------VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 514 RNLKA--KVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLA-ENQRSESERTT 590
Cdd:pfam02463 785 KLKVEeeKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAeEELERLEEEIT 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 591 NAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEEL 670
Cdd:pfam02463 865 KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEE 944
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62484427 671 EMavtrEKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSE 732
Cdd:pfam02463 945 AD----EKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-588 |
1.15e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRS 436
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 437 YLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQssidelcmkEEALKQRDEmvscLLEELVKVRQGLAESEDQIRNL 516
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAA---------AELAAQLEE----LEEAEEALLERLERLEEELEEL 426
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 62484427 517 KAKVEELEEDKKTLRETtpdnsvahlQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESER 588
Cdd:COG1196 427 EEALAELEEEEEEEEEA---------LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
358-600 |
1.16e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQL---- 433
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlral 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 434 ----RRSYLEVSHQLENANEEVRGLSLrLQEnnvsidSNNSRQSSIDELCMKEEALKQrdemvscLLEELVKVRQGLAES 509
Cdd:COG4942 114 yrlgRQPPLALLLSPEDFLDAVRRLQY-LKY------LAPARREQAEELRADLAELAA-------LRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 510 EDQIRNLKAKVEELEEDKKTLRETtpdnsvahlqdelIASKLREAEAslSLKDLKQRVQELSSQWQRQLAENQRSESERT 589
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLAR-------------LEKELAELAA--ELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
250
....*....|.
gi 62484427 590 TNAVDSTPKKL 600
Cdd:COG4942 245 AAGFAALKGKL 255
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
363-769 |
1.18e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 363 MEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSH 442
Cdd:PRK02224 256 LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 443 QLENANEEVRGL---SLRLQENNVSIDSNNSRQSSidELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAK 519
Cdd:PRK02224 336 AAQAHNEEAESLredADDLEERAEELREEAAELES--ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 520 VEELEEDKKTLREttpdnsvahlqdeliasklREAEASLSLKDLKQRVQELssqwQRQLAENQRSESERttnavdstpkk 599
Cdd:PRK02224 414 LEELREERDELRE-------------------REAELEATLRTARERVEEA----EALLEAGKCPECGQ----------- 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 600 lltnffdSSKSSEHTQKLEEElmttRIREMETLTELKELRLKVMELETQVQvSTNQLRRQDEEHKKLKEELEMAVTREKD 679
Cdd:PRK02224 460 -------PVEGSPHVETIEED----RERVEELEAELEDLEEEVEEVEERLE-RAEDLVEAEDRIERLEERREDLEELIAE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 680 MSNKAREQQHRYSDLESRMKD---ELMNVKIKFTEQSQTVAELKQEISRLETKnsemlaEGELRANLDDSDKVRDLQDRL 756
Cdd:PRK02224 528 RRETIEEKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEAREEVAELNSK------LAELKERIESLERIRTLLAAI 601
|
410
....*....|...
gi 62484427 757 ADMKAELTALKSR 769
Cdd:PRK02224 602 ADAEDEIERLREK 614
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
360-778 |
1.81e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 360 MKKMEKEYQDL----KKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADrlVRGQVSRAEEEETSYAIQTELMQLRR 435
Cdd:COG4717 48 LERLEKEADELfkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEE--LEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 436 SYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELcmKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRN 515
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEEL--EAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 516 LKAKVEELEEDKKTLREttpdnsvahlQDELIASKLREAEASLSLKDLKQRVQELSSQWQ--------RQLAENQRSESE 587
Cdd:COG4717 204 LQQRLAELEEELEEAQE----------ELEELEEELEQLENELEAAALEERLKEARLLLLiaaallalLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 588 RTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLK 667
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 668 EELEMAvTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE----------- 736
Cdd:COG4717 354 REAEEL-EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELlealdeeelee 432
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 62484427 737 --GELRANLDD-SDKVRDLQDRLADMKAELTALKSRGKFPGAKLR 778
Cdd:COG4717 433 elEELEEELEElEEELEELREELAELEAELEQLEEDGELAELLQE 477
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
354-732 |
1.88e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 354 KLNTKRMKKmEKEYQDLKKKEQeemaelrrlrRENCLLKQRNELlEAESAELADRLVRGQVSRAEEEETSYAIQTELMQL 433
Cdd:TIGR04523 191 KIKNKLLKL-ELLLSNLKKKIQ----------KNKSLESQISEL-KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 434 RRSYLEVSHQL-------ENANEEVRGLSLRLQENNVSI-DSNNSRQSSIDELcMKEEaLKQRDEMVSCLLEELVKVRQG 505
Cdd:TIGR04523 259 KDEQNKIKKQLsekqkelEQNNKKIKELEKQLNQLKSEIsDLNNQKEQDWNKE-LKSE-LKNQEKKLEEIQNQISQNNKI 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 506 LAESEDQIRNLKAKVEELEEDKKTLrettpDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSE 585
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEK-----QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 586 SE------------------RTTNAVDSTPKKLLTN-------FFDSSKSSEHTQKLEEELMTTRIREMETLTE--LKEL 638
Cdd:TIGR04523 412 EQikklqqekellekeierlKETIIKNNSEIKDLTNqdsvkelIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkQKEL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 639 RLKVMELETQvqvsTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLES---RMKDELMNVKIK--FTEQS 713
Cdd:TIGR04523 492 KSKEKELKKL----NEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDelnKDDFELKKENLEkeIDEKN 567
|
410
....*....|....*....
gi 62484427 714 QTVAELKQEISRLETKNSE 732
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEE 586
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
465-796 |
2.32e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.15 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 465 IDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELE---EDKKTLRETTpDNSVAH 541
Cdd:COG5022 764 YLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQktiKREKKLRETE-EVEFSL 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 542 LQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSEserTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEEL 621
Cdd:COG5022 843 KAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQE---LKIDVKSISSLKLVNLELESEIIELKKSLSSDL 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 622 MTTRIREMETLTELKELRLKVM-----ELETQVQVSTNQLRRQDEEHKKLKEELEMAV---TREKDMSNKAREQQHRYSD 693
Cdd:COG5022 920 IENLEFKTELIARLKKLLNNIDleegpSIEYVKLPELNKLHEVESKLKETSEEYEDLLkksTILVREGNKANSELKNFKK 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 694 LESRMKDELMnvkiKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANLDDSDKV-RDLQDRLADMKAELTALKSRGkf 772
Cdd:COG5022 1000 ELAELSKQYG----ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLkGLLLLENNQLQARYKALKLRR-- 1073
|
330 340
....*....|....*....|....
gi 62484427 773 PGAKLRSSSIQSIESTEIDFNDLN 796
Cdd:COG5022 1074 ENSLLDDKQLYQLESTENLLKTIN 1097
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
454-650 |
2.35e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.98 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 454 LSLRLQENNVSIDSNNSRQSSIDELcMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEdkkTLRET 533
Cdd:PRK11281 24 SAFARAASNGDLPTEADVQAQLDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPA---KLRQA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 534 TpdNSVAHLQDELiASKLREAEASLSLKDLKQRVQELSSQ---WQRQLAE------NQRSESERTTNAVDSTPK------ 598
Cdd:PRK11281 100 Q--AELEALKDDN-DEETRETLSTLSLRQLESRLAQTLDQlqnAQNDLAEynsqlvSLQTQPERAQAALYANSQrlqqir 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484427 599 KLLTNFFDSSKSSEHTQK--LEEEL------MTTRIREME---TLTEL-----KELRLKVMELETQVQ 650
Cdd:PRK11281 177 NLLKGGKVGGKALRPSQRvlLQAEQallnaqNDLQRKSLEgntQLQDLlqkqrDYLTARIQRLEHQLQ 244
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
472-763 |
2.56e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 472 QSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPD--NSVAHLQDElIAS 549
Cdd:PRK02224 219 DEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDlrERLEELEEE-RDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 550 KLREAE-ASLSLKDLKQRVQELSSQWQ--RQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRI 626
Cdd:PRK02224 298 LLAEAGlDDADAEAVEARREELEDRDEelRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEARE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 627 REMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLE----------- 695
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEalleagkcpec 457
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62484427 696 ------SRMKDELMNVKIKFTEQSQTVAELKQEISRLETK--NSEMLAEGELRANlDDSDKVRDLQDRLADMKAEL 763
Cdd:PRK02224 458 gqpvegSPHVETIEEDRERVEELEAELEDLEEEVEEVEERleRAEDLVEAEDRIE-RLEERREDLEELIAERRETI 532
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-769 |
3.11e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 333 KELPGRVEADVEGFFNLAYSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRREnclLKQRNEllEAESAELADRLVRG 412
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADE---AKKKAE--EAKKADEAKKKAEE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 413 QVSRAEEEETSYAIQTELMQLRRSYLEVS-HQLENANEEVRGLSLRLQENNVSIDSNNSRQSSI---DELCMKEEALKQR 488
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAaDEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKK 1406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 489 DEMVSCLLEELVKVRQGL--AESEDQIRNLKAKVEE---LEEDKKTLRET-TPDNSVAHLQDELIASKLRE-AEASLSLK 561
Cdd:PTZ00121 1407 ADELKKAAAAKKKADEAKkkAEEKKKADEAKKKAEEakkADEAKKKAEEAkKAEEAKKKAEEAKKADEAKKkAEEAKKAD 1486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 562 DLKQRVQElssqwQRQLAENQRSESERTTNAvDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELR-- 639
Cdd:PTZ00121 1487 EAKKKAEE-----AKKKADEAKKAAEAKKKA-DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKka 1560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 640 ---LKVMELETQVQVSTNQLRRQDE----EHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQ 712
Cdd:PTZ00121 1561 eekKKAEEAKKAEEDKNMALRKAEEakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 62484427 713 SQTVAELKQEISRLETKNSEMLAEGELRANLDDSDKVRDLQDRLADMKAELTALKSR 769
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
472-681 |
3.81e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 47.33 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 472 QSSIDELCMKEEALKqrdemvscllEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRET-----TPDNSVAHLQDEL 546
Cdd:pfam05667 341 QEQLEDLESSIQELE----------KEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTldllpDAEENIAKLQALV 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 547 IASKlreaeaslslkdlkQRVQELSSQW---QRQLAENQRSESERTTNavdstpkklltnffdssKSSEHTQKLEeelmt 623
Cdd:pfam05667 411 DASA--------------QRLVELAGQWekhRVPLIEEYRALKEAKSN-----------------KEDESQRKLE----- 454
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 62484427 624 triremetltELKELRlkvmeleTQVQVSTNQLRRQDEEHKKLKEELEmavTREKDMS 681
Cdd:pfam05667 455 ----------EIKELR-------EKIKEVAEEAKQKEELYKQLVAEYE---RLPKDVS 492
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
363-639 |
5.14e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 5.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 363 MEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQlrrsylevsh 442
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQ---------- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 443 qlenANEEVRGLSLRLQENNVSIDSNNSR----QSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKA 518
Cdd:pfam07888 183 ----TEEELRSLSKEFQELRNSLAQRDTQvlqlQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGE 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 519 KVEELEEDKKtlrettpdnsvaHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQ------RQLAENQRSESERTTNA 592
Cdd:pfam07888 259 ELSSMAAQRD------------RTQAELHQARLQAAQLTLQLADASLALREGRARWAqeretlQQSAEADKDRIEKLSAE 326
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 62484427 593 VDSTPKKLltnffdsSKSSEHTQKLEEELM----TTRIREMETLTELKELR 639
Cdd:pfam07888 327 LQRLEERL-------QEERMEREKLEVELGrekdCNRVQLSESRRELQELK 370
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
433-806 |
5.57e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 433 LRRSYLEVSHQLENANEEVRGLS-LRLQENNVSIDSNNSRQSSIDEL----CMKEEALKQRDEMVscllEELVKVRQGLA 507
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMAdIRRRESQSQEDLRNQLQNTVHELeaakCLKEDMLEDSNTQI----EQLRKMMLSHE 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 508 ESEDQIRNLKAKVEELEEDKKTLRETTpdnSVAHLQD--ELIASKLREAEASLSLkdLKQRVQELSSQWQRQLAENQ--- 582
Cdd:pfam15921 184 GVLQEIRSILVDFEEASGKKIYEHDSM---STMHFRSlgSAISKILRELDTEISY--LKGRIFPVEDQLEALKSESQnki 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 583 ----RSESERTTNAVDSTPKKL--LTNFFDSSKSSEHTQKLEEELMTTRIREMETLtelkeLRLKVMELETQVQVSTNQL 656
Cdd:pfam15921 259 elllQQHQDRIEQLISEHEVEItgLTEKASSARSQANSIQSQLEIIQEQARNQNSM-----YMRQLSDLESTVSQLRSEL 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 657 RRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRL---ETKNSem 733
Cdd:pfam15921 334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrDTGNS-- 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 734 LAEGELRANLDDSD-KVRDLQDRLADMKAELTALKSR------GKFPGAKLRSSSIQSIESTEidfndlNMVRRGSTELS 806
Cdd:pfam15921 412 ITIDHLRRELDDRNmEVQRLEALLKAMKSECQGQMERqmaaiqGKNESLEKVSSLTAQLESTK------EMLRKVVEELT 485
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
349-781 |
7.35e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 7.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 349 LAYSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAE------SAELADRLVRGQVSRAEEEET 422
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnPGPLTRRMQRGEQTYAQLETS 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 423 SYAIQTELMQLRRSYLEVSHQLENANEEVrgLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVK- 501
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSF--SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKl 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 502 --------VRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASKLRE------------------AE 555
Cdd:TIGR00618 622 qpeqdlqdVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAlqkmqsekeqltywkemlAQ 701
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 556 ASLSLKDLKQRVQELSSQWQR--QLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSS--EHTQKLEEELMttrirEMET 631
Cdd:TIGR00618 702 CQTLLRELETHIEEYDREFNEieNASSSLGSDLAAREDALNQSLKELMHQARTVLKARteAHFNNNEEVTA-----ALQT 776
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 632 LTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTE 711
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE 856
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 712 QSQTVAELKQEISRLETKNSEMLAEGELRaNLDDSDKVRDLQDRLADMKAELTALKSRGKFPGAKLRSSS 781
Cdd:TIGR00618 857 CSKQLAQLTQEQAKIIQLSDKLNGINQIK-IQFDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHV 925
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
364-769 |
1.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 364 EKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLvRGQVSRAEEEetsyaIQTELMQLRRSYLEVSHQ 443
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI-RGNGGDRLEQ-----LEREIERLERELEERERR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 444 LENANEEVRGLSLRLQEnnvsidsnnsrqsSIDELcmkEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEEL 523
Cdd:COG4913 361 RARLEALLAALGLPLPA-------------SAEEF---AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 524 EEDKKTLReTTPDNSVAHLQD--ELIASKLREAEASLS-LKDLKQrVQELSSQWQ------------------RQLAE-- 580
Cdd:COG4913 425 EAEIASLE-RRKSNIPARLLAlrDALAEALGLDEAELPfVGELIE-VRPEEERWRgaiervlggfaltllvppEHYAAal 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 581 ---NQRSESER-TTNAVDSTPKKLLTNFFD--------SSKSSEHTQKLEEELMTTRIRE-METLTELKELRLKVMElet 647
Cdd:COG4913 503 rwvNRLHLRGRlVYERVRTGLPDPERPRLDpdslagklDFKPHPFRAWLEAELGRRFDYVcVDSPEELRRHPRAITR--- 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 648 QVQVSTNQLRRQ------------------------DEEHKKLKEELEMAVTREKDMSNKA---REQQHRYSDLEsrmkd 700
Cdd:COG4913 580 AGQVKGNGTRHEkddrrrirsryvlgfdnraklaalEAELAELEEELAEAEERLEALEAELdalQERREALQRLA----- 654
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62484427 701 elmnvkiKFTEQSQTVAELKQEISRLETknsemlaegELRANLDDSDKVRDLQDRLADMKAELTALKSR 769
Cdd:COG4913 655 -------EYSWDEIDVASAEREIAELEA---------ELERLDASSDDLAALEEQLEELEAELEELEEE 707
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
358-767 |
1.43e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLvrgqvSRAEEEETSYAIQTELMQLRRSY 437
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA-----EAAEEKAEAAEKKKEEAKKKADA 1382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 LEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVScLLEELVKVRQGL--AESEDQIRN 515
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK-KAEEAKKADEAKkkAEEAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 516 LKAKVEE---LEEDKKTLRETTPDNSVAHLQDELI--ASKLREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESE--- 587
Cdd:PTZ00121 1462 AKKKAEEakkADEAKKKAEEAKKADEAKKKAEEAKkkADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakk 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 588 -RTTNAVDSTPKKLLTNFFDSSKSSEHTQKlEEELMTTRIREMETLTELKELRLK-VMELETQVQVSTNQLRRQDEEHKK 665
Cdd:PTZ00121 1542 aEEKKKADELKKAEELKKAEEKKKAEEAKK-AEEDKNMALRKAEEAKKAEEARIEeVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 666 LKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNvKIKFTEQSQTVAELKQEISRL-ETKNSEMLAEGELRANLD 744
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN-KIKAAEEAKKAEEDKKKAEEAkKAEEDEKKAAEALKKEAE 1699
|
410 420
....*....|....*....|...
gi 62484427 745 DSDKVRDLQDRLADMKAELTALK 767
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELK 1722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-769 |
1.92e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 351 YSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTEL 430
Cdd:PTZ00121 1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 431 MQLRRsyLEVSHQLENAN--------EEVR-GLSLRLQENNVSIDSNNSRQS--SIDELCMKEEAlkQRDEMVSCLLEEL 499
Cdd:PTZ00121 1161 EDARK--AEEARKAEDAKkaeaarkaEEVRkAEELRKAEDARKAEAARKAEEerKAEEARKAEDA--KKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 500 VKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDEL-------IASKLREAEASLSLKDLKQRVQEL-S 571
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELkkaeekkKADEAKKAEEKKKADEAKKKAEEAkK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 572 SQWQRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELEtqvqv 651
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----- 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 652 STNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDElmnvKIKFTEQSQTVAELKQEISRLETKNS 731
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKAEEAKKKAE 1467
|
410 420 430
....*....|....*....|....*....|....*...
gi 62484427 732 EMLAEGELRANLDDSDKVRDLQDRLADMKAELTALKSR 769
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
348-769 |
3.20e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 348 NLAYSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRREncLLKQRNELLEAESaeladrlvrgQVSRAEEEETSYaiQ 427
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTE--IKKKEKELEKLNN----------KYNDLKKQKEEL--E 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 428 TELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDELcmkEEALKQRDEMVSCLLEELVKVRQGLA 507
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISEL---KKQNNQLKDNIEKKQQEINEKTTEIS 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 508 ESEDQIRNLK-----------AKVEELEEDKKTLRETTpdNSVAHLQDELiaSKLREAEASLSLKDLKQRVQelSSQWQR 576
Cdd:TIGR04523 250 NTQTQLNQLKdeqnkikkqlsEKQKELEQNNKKIKELE--KQLNQLKSEI--SDLNNQKEQDWNKELKSELK--NQEKKL 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 577 QLAENQRSESERTTNAVDSTPKKLLTNFFDS-SKSSEHTQKLEE---ELMTTRIREMETLTELKELRLKVMELETQVQVS 652
Cdd:TIGR04523 324 EEIQNQISQNNKIISQLNEQISQLKKELTNSeSENSEKQRELEEkqnEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 653 TNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLE---SRMKDELMNVKIKFTEQSQTVAELKQEISR---- 725
Cdd:TIGR04523 404 EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTnqdSVKELIIKNLDNTRESLETQLKVLSRSINKikqn 483
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 62484427 726 -------LETKNSEMLAEGELRANLDdsDKVRDLQDRLADMKAELTALKSR 769
Cdd:TIGR04523 484 leqkqkeLKSKEKELKKLNEEKKELE--EKVKDLTKKISSLKEKIEKLESE 532
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
360-730 |
4.28e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 360 MKKMEKEYQDLKKKEQE---EMAELRR-LRRENCLLKQRNELLEAESAELADRLVRGQVS-RAEEEETSYAIQTELMQ-- 432
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKvnrDIQRLKNdIEEQETLLGTIMPEEESAKVCLTDVTIMERFQmELKDVERKIAQQAAKLQgs 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 433 -LRRSYLEVSHQLENANEEVRGLSLRLQENNVSIDSNNSR----QSSIDELCMKE----EALKQRDEMVScLLEELVKVR 503
Cdd:TIGR00606 819 dLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQiqhlKSKTNELKSEKlqigTNLQRRQQFEE-QLVELSTEV 897
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 504 QGLAESEDQIRNLKAKVEELEEDKKTLRE---TTPDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQLAE 580
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKDQQEKEeliSSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKET 977
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 581 N------QRSESERTTNAVDSTpKKLLTNFFDSSKSSEhtqKLEEELMTTRIREmETLTELKELRLKVMEletqvQVSTN 654
Cdd:TIGR00606 978 ElntvnaQLEECEKHQEKINED-MRLMRQDIDTQKIQE---RWLQDNLTLRKRE-NELKEVEEELKQHLK-----EMGQM 1047
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62484427 655 QLRRQDEEHKKLKEELEMAvtreKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETKN 730
Cdd:TIGR00606 1048 QVLQMKQEHQKLEENIDLI----KRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
481-767 |
4.80e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 481 KEEALKQRDEMvsclleelvkvRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnsVAHLQDELiasKLREAE-ASLS 559
Cdd:COG1196 174 KEEAERKLEAT-----------EENLERLEDILGELERQLEPLERQAEKAER------YRELKEEL---KELEAElLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 560 LKDLKQRVQELSSQwqRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLT----EL 635
Cdd:COG1196 234 LRELEAELEELEAE--LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIArleeRR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 636 KELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQT 715
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 62484427 716 VAELKQEISRLETKNSEMLAEGELRANLDDSDKVRDLQDRLADMKAELTALK 767
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
324-788 |
6.12e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 324 MEAMLKFFQKELPGRVEADVEGFFNLAYSIKLNTKRMKKMEKEYQDLKKKEQEemaelrrLRRENCLLKQRNELLEAESA 403
Cdd:pfam15921 431 LEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEE-------LTAKKMTLESSERTVSDLTA 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 404 ELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHqLENANEEVRGLSLRLQENNVSIDSNNSRQSSIDEL----- 478
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDH-LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgqhg 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 479 ----CMKEEALKQRDEMVSCLLEelVKVRQGLAESED-QIRNLKAKVEELEEDKKTLrettpdnsVAHLQDELIASKLRE 553
Cdd:pfam15921 583 rtagAMQVEKAQLEKEINDRRLE--LQEFKILKDKKDaKIRELEARVSDLELEKVKL--------VNAGSERLRAVKDIK 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 554 AEASLSLKDLKQRVQELSSQWQ-----RQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIRE 628
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEdyevlKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGM 732
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 629 METLT----ELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRysdlESRMKDELMN 704
Cdd:pfam15921 733 QKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ----ERRLKEKVAN 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 705 VKIKFTEQSQTVAELKQEISRLETKNsemlaegeLRANLDDSDKVRDLQdrlADMKAELTALKSRGKFPGAKLRS-SSIQ 783
Cdd:pfam15921 809 MEVALDKASLQFAECQDIIQRQEQES--------VRLKLQHTLDVKELQ---GPGYTSNSSMKPRLLQPASFTRThSNVP 877
|
....*
gi 62484427 784 SIEST 788
Cdd:pfam15921 878 SSQST 882
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
357-538 |
9.71e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 9.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 357 TKRMKKMEKEYQDLKKKEQEEMAELRRLRREnclLKQRNELLEAESAELadrlvrgqvsraeeeetsYAIQTELMQLRRS 436
Cdd:TIGR02169 356 TEEYAELKEELEDLRAELEEVDKEFAETRDE---LKDYREKLEKLKREI------------------NELKRELDRLQEE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 437 YLEVSHQLENANEEVRGLSLRLQEnnvsidSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNL 516
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINE------LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
170 180
....*....|....*....|..
gi 62484427 517 KAKVEELEEDKKTLRETTPDNS 538
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGR 510
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
359-791 |
1.04e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 359 RMKKMEKEYQDLKKKEQEEMAELR-RLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:pfam12128 284 TSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 --LEVSHQLENANEEVRgLSLRLQENNVSIDSNNSRQSSIDE-----LCMKEEALKQ-----RDEMVSCLLE-------- 497
Cdd:pfam12128 364 kaLTGKHQDVTAKYNRR-RSKIKEQNNRDIAGIKDKLAKIREardrqLAVAEDDLQAleselREQLEAGKLEfneeeyrl 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 498 ----ELVKVRQGLAE-SEDQIRNLKAKVEELEEDKKTLRETTpdNSVAHLQDELIASKLREAEASLSLKDLKQRVQELSS 572
Cdd:pfam12128 443 ksrlGELKLRLNQATaTPELLLQLENFDERIERAREEQEAAN--AEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 573 QWQR----------QLAENQRSES---ERTTNAVDSTPKKLLTN---FFDSSKSSEHTQKLEEELMTTRIREMETLTELK 636
Cdd:pfam12128 521 ALDElelqlfpqagTLLHFLRKEApdwEQSIGKVISPELLHRTDldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 637 ELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELE---MAVTREKDMSNKAREQQHRYSDL---ESRMKDELMNVKIKFT 710
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEkasREETFARTALKNARLDLRRLFDEkqsEKDKKNKALAERKDSA 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 711 EQSqtVAELKQEISRLETKNSEMLAE--GELRANLDDSDKVR-----DLQDRLADMKAELTALKSrgkfpGAKLRSSSIQ 783
Cdd:pfam12128 681 NER--LNSLEAQLKQLDKKHQAWLEEqkEQKREARTEKQAYWqvvegALDAQLALLKAAIAARRS-----GAKAELKALE 753
|
....*...
gi 62484427 784 SIESTEID 791
Cdd:pfam12128 754 TWYKRDLA 761
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
364-735 |
1.08e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 364 EKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEetsyaiqtelmqlrrsylevshQ 443
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQE----------------------K 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 444 LENANEEVRGLSLRLQEnnvsidSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEEL 523
Cdd:PRK04863 350 IERYQADLEELEERLEE------QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 524 EEDKK--TLRETTPDNsVAHLQDELIAsklREAEASLSLKDLKQRVqelssqwqrQLAENQRSESERTTNAVDStpkklL 601
Cdd:PRK04863 424 ERAKQlcGLPDLTADN-AEDWLEEFQA---KEQEATEELLSLEQKL---------SVAQAAHSQFEQAYQLVRK-----I 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 602 TNFFDSSKSSEHTQKLEEELMTTRIRemetLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEmavtREKDMS 681
Cdd:PRK04863 486 AGEVSRSEAWDVARELLRRLREQRHL----AEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLD----DEDELE 557
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 62484427 682 NKAREQQHRYSDLEsrmkDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLA 735
Cdd:PRK04863 558 QLQEELEARLESLS----ESVSEARERRMALRQQLEQLQARIQRLAARAPAWLA 607
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
615-771 |
1.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 615 QKLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQD-EEHKKLKEELEMAVTREKDMSNKAREQQHRYSD 693
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62484427 694 LESRMKDElmnvKIKFTEQSQTVAELKQEISRLETKNSEMLAEGElranlddsDKVRDLQDRLADMKAELTALKSRGK 771
Cdd:COG4913 371 LGLPLPAS----AEEFAALRAEAAALLEALEEELEALEEALAEAE--------AALRDLRRELRELEAEIASLERRKS 436
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
358-797 |
1.45e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVsraeeeeTSYAIQTELMQLRRSY 437
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEI-------DPDAIKKELNEINVKL 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 LEVSHQLENANEEVRglSLRLQENNVSIDSNNSRQSSIDELC-------MKEEALKQRDEMVSCLLEELVKVRQGLAESE 510
Cdd:PRK01156 419 QDISSKVSSLNQRIR--ALRENLDELSRNMEMLNGQSVCPVCgttlgeeKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 511 DQIRNLKaKVEELEEDKKTLRETTPDNSVAHLQDELIASKLREAEaslsLKDLKQRVQELSSQWQRQLAENQRSESERTT 590
Cdd:PRK01156 497 EKIVDLK-KRKEYLESEEINKSINEYNKIESARADLEDIKIKINE----LKDKHDKYEEIKNRYKSLKLEDLDSKRTSWL 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 591 NA---VDSTPKKLLTNFFDSSKSS-----EHTQKLEEEL------MTTRIREMEtlTELKELRLKVMELEtQVQVSTNQL 656
Cdd:PRK01156 572 NAlavISLIDIETNRSRSNEIKKQlndleSRLQEIEIGFpddksyIDKSIREIE--NEANNLNNKYNEIQ-ENKILIEKL 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 657 RRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDELMNVkikfTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:PRK01156 649 RGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANR----ARLESTIEILRTRINELSDRINDINET 724
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62484427 737 GE----LRANLDDSDKVRDLQDrladmKAELTAL--KSRGKFPGAKLRsssiQSIESTEIDFNDLNM 797
Cdd:PRK01156 725 LEsmkkIKKAIGDLKRLREAFD-----KSGVPAMirKSASQAMTSLTR----KYLFEFNLDFDDIDV 782
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
358-763 |
2.34e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 358 KRMkkMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSY 437
Cdd:pfam15921 337 KRM--YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 438 LEVSHQLENANEEVRGLSLRLQENNVSIDSNNSRQ--------SSIDELCMKEEALKQRDEMVSCLLEELVKVRQGLAES 509
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQmaaiqgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 510 EDQIRNLKAKVEELEE-------DKKTLRE------------TTPDNSVAHLQDELIASKLREAEASLSLKDLKQRVQ-- 568
Cdd:pfam15921 495 ERTVSDLTASLQEKERaieatnaEITKLRSrvdlklqelqhlKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnm 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 569 -ELSSQWQRQ----LAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREM--ETLTELKELRLK 641
Cdd:pfam15921 575 tQLVGQHGRTagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgsERLRAVKDIKQE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 642 VMELETQVQVSTNQLRRQDEEHKKLK-------EELEMAVTREK-DMSNKAREQQHRYSDLES----------------- 696
Cdd:pfam15921 655 RDQLLNEVKTSRNELNSLSEDYEVLKrnfrnksEEMETTTNKLKmQLKSAQSELEQTRNTLKSmegsdghamkvamgmqk 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 697 -----RMKDELMNVKIKFTEQSQTVA------------ELKQEISRLETKNSEMLAEGE-LRAnlddsdKVRDLQDRLAD 758
Cdd:pfam15921 735 qitakRGQIDALQSKIQFLEEAMTNAnkekhflkeeknKLSQELSTVATEKNKMAGELEvLRS------QERRLKEKVAN 808
|
....*
gi 62484427 759 MKAEL 763
Cdd:pfam15921 809 MEVAL 813
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
550-769 |
2.51e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 550 KLREAEASLSLKDLKQRVQELSSQWQRqlAENQRSESERTTNAVDSTpkklltnffdsskssehtqkLEEELMTTRIREM 629
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEE--AEAALEEFRQKNGLVDLS--------------------EEAKLLLQQLSEL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 630 ETltELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREkdmsnkareqqhRYSDLESRMKDELMnvkiKF 709
Cdd:COG3206 225 ES--QLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRA------------QLAELEAELAELSA----RY 286
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 710 TEQSQTVAELKQEISRLETKNSEMLAEGELRANLDdsdkVRDLQDRLADMKAELTALKSR 769
Cdd:COG3206 287 TPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE----LEALQAREASLQAQLAQLEAR 342
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
472-694 |
3.07e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 472 QSSIDELCMKEEALKQRDEMVSCLLEELVKVrqglaeSEDQIRNLKAKVEELEEDKKTLRettpdNSVAHLQDELIASKL 551
Cdd:PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK------NGENIARKQNKYDELVEEAKTIK-----AEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 552 REAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERT----TNAVDSTPKKLLTNffdSSKSSEHTQKLeEELMTTRIR 627
Cdd:PHA02562 249 DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcptcTQQISEGPDRITKI---KDKLKELQHSL-EKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62484427 628 EMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDL 694
Cdd:PHA02562 325 LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
354-736 |
3.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.96 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 354 KLNTKRMK-KMEKEYQDLKKKEQEEMA---ELRRLRRENC-------LLK-------QRNELLEAESAELADRLVRG--- 412
Cdd:pfam10174 281 KSHSKFMKnKIDQLKQELSKKESELLAlqtKLETLTNQNSdckqhieVLKesltakeQRAAILQTEVDALRLRLEEKesf 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 413 ------QVSRAEEEETSYAIQTELMQ------------LRRSYLEVSHQLENANEEVRGLSLRLQEnnVSIDSNNSRQSs 474
Cdd:pfam10174 361 lnkktkQLQDLTEEKSTLAGEIRDLKdmldvkerkinvLQKKIENLQEQLRDKDKQLAGLKERVKS--LQTDSSNTDTA- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 475 ideLCMKEEALKQRDEMVSCL-----------LEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQ 543
Cdd:pfam10174 438 ---LTTLEEALSEKERIIERLkeqreredrerLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 544 DEliaSKLREAEASlslkdLKQRVQElSSQWQRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMT 623
Cdd:pfam10174 515 KD---SKLKSLEIA-----VEQKKEE-CSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 624 TRIREMETLTELKELRLKVMELETQVQV------STNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQ-HRYSDLES 696
Cdd:pfam10174 586 GILREVENEKNDKDKKIAELESLTLRQMkeqnkkVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQlEELMGALE 665
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 62484427 697 RMKDELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAE 736
Cdd:pfam10174 666 KTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEE 705
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
498-702 |
3.71e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 498 ELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLREttpdnSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQWQRQ 577
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNE-----EYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 578 LAENQRSESerTTNAVD-----STPKKLLTNFFDSSKSSEHTQKLeeelmttriremetLTELKELRLKVMELETQVQVS 652
Cdd:COG3883 92 ARALYRSGG--SVSYLDvllgsESFSDFLDRLSALSKIADADADL--------------LEELKADKAELEAKKAELEAK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 62484427 653 TNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKDEL 702
Cdd:COG3883 156 LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAEL 205
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
496-728 |
4.03e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 496 LEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPD------NSVAHLQDEL--IASKLREAEASLSLKDLKQRV 567
Cdd:TIGR00618 172 LFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCmpdtyhERKQVLEKELkhLREALQQTQQSHAYLTQKREA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 568 QELSSQWQRQL---------AENQRSESERTTNAVDSTPKKLltNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKEL 638
Cdd:TIGR00618 252 QEEQLKKQQLLkqlrarieeLRAQEAVLEETQERINRARKAA--PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 639 RLKVM----------ELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQH--RYSDLESRMKDELMNVK 706
Cdd:TIGR00618 330 RAAHVkqqssieeqrRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTltQKLQSLCKELDILQREQ 409
|
250 260
....*....|....*....|..
gi 62484427 707 IKFTEQSQTVAELKQEISRLET 728
Cdd:TIGR00618 410 ATIDTRTSAFRDLQGQLAHAKK 431
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
379-743 |
4.30e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 379 AELRRLRRENCLlKQRNELLEAESAELADRlvrgQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEEVRGLSLRL 458
Cdd:pfam07888 29 AELLQNRLEECL-QERAELLQAQEAANRQR----EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 459 QENNVSIDSNNSRQSSI-DELCMKEEALKQRDEMVSCLLEELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLrETTPDN 537
Cdd:pfam07888 104 KELSASSEELSEEKDALlAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQL-QAKLQQ 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 538 SVAHLQDelIASKLREAEASLSLKDLK-QRVQELSSQWQRQLAENQRSESErttnavDSTPKKLLTNFFDSSKSSEHT-Q 615
Cdd:pfam07888 183 TEEELRS--LSKEFQELRNSLAQRDTQvLQLQDTITTLTQKLTTAHRKEAE------NEALLEELRSLQERLNASERKvE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 616 KLEEELMTTRIREMETLTELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRysdLE 695
Cdd:pfam07888 255 GLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQR---LE 331
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 62484427 696 SRMKDELMnvkikftEQSQTVAELKQEISRLETKNSEMLAE-GELRANL 743
Cdd:pfam07888 332 ERLQEERM-------EREKLEVELGREKDCNRVQLSESRRElQELKASL 373
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
353-547 |
4.47e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 353 IKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNE---LLEAESAELADRLVR--GQVSRAEEEETSY--A 425
Cdd:COG4942 78 LAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalLLSPEDFLDAVRRLQylKYLAPARREQAEElrA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 426 IQTELMQLRRSYLEVSHQLENANEEVRGLSLRLqennvsidsnnsrqssidelcmkEEALKQRDEMVSCLLEELVKVRQG 505
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAAL-----------------------EALKAERQKLLARLEKELAELAAE 214
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 62484427 506 LAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELI 547
Cdd:COG4942 215 LAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
361-763 |
5.30e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 361 KKMEKEYQDLKKKEQEEMAELRRLRRENC--------------LLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAI 426
Cdd:pfam01576 99 KKMQQHIQDLEEQLDEEEAARQKLQLEKVtteakikkleedilLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSL 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 427 Q----------TELMQLRRSYLEVSHQLENANEEVRGLSLRLQENNVSIdsnnsrQSSIDELCMKeeaLKQRDEMVSCLL 496
Cdd:pfam01576 179 SklknkheamiSDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAEL------QAQIAELRAQ---LAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 497 EELVKVRQGLAESEDQIRNLKAKVEELEEDKKTLR--ETTPDNSVAHLQDELIASKlREAEASLslkDLKQRVQELSSQW 574
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERaaRNKAEKQRRDLGEELEALK-TELEDTL---DTTAAQQELRSKR 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 575 QRQLAENQRSESERTTNAVDSTpkklltnffdSSKSSEHTQKLEE--ELMTTRIREMETLTELKElRLKVMELETQVQVS 652
Cdd:pfam01576 326 EQEVTELKKALEEETRSHEAQL----------QEMRQKHTQALEEltEQLEQAKRNKANLEKAKQ-ALESENAELQAELR 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 653 TNQLRRQDEEHKKLKEELEMAVTREKdmSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLETK--N 730
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQAR--LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQlqD 472
|
410 420 430
....*....|....*....|....*....|...
gi 62484427 731 SEMLAEGELRANLDDSDKVRDLQDRLADMKAEL 763
Cdd:pfam01576 473 TQELLQEETRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
359-736 |
7.39e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 359 RMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEAESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYL 438
Cdd:pfam01576 195 RLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 439 EVSHQLEN-------ANEEVRGLSLRLQ----ENNVSIDSNNSRQS----SIDELCMKEEALKQRDEMVSCLLEEL-VKV 502
Cdd:pfam01576 275 ELQEDLESeraarnkAEKQRRDLGEELEalktELEDTLDTTAAQQElrskREQEVTELKKALEEETRSHEAQLQEMrQKH 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 503 RQGLAESEDQIRNLKAKVEELEEDKKTLrettpDNSVAHLQDELIASKLREAEASLSLKDLKQRVQELS---SQWQRQLA 579
Cdd:pfam01576 355 TQALEELTEQLEQAKRNKANLEKAKQAL-----ESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQarlSESERQRA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 580 ENQ------RSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEEL---------MTTRIREMET-----LTELKELR 639
Cdd:pfam01576 430 ELAeklsklQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLqeetrqklnLSTRLRQLEDernslQEQLEEEE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 640 LKVMELETQVQVSTNQL----RRQDEE----------HKKLKEELEMAVTREKDMSnkarEQQHRYSDLESRMKDELMNV 705
Cdd:pfam01576 510 EAKRNVERQLSTLQAQLsdmkKKLEEDagtlealeegKKRLQRELEALTQQLEEKA----AAYDKLEKTKNRLQQELDDL 585
|
410 420 430
....*....|....*....|....*....|.
gi 62484427 706 KIKFTEQSQTVAELKQEisrlETKNSEMLAE 736
Cdd:pfam01576 586 LVDLDHQRQLVSNLEKK----QKKFDQMLAE 612
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
375-573 |
8.34e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 8.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 375 QEEMAELRRLRRENCLLKQRNELLE--AESAELADRLvRGQVSRAEEEET---SYAIQTELMQLRRSYLEVSHQLENANE 449
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIELLEpiRELAERYAAA-RERLAELEYLRAalrLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 450 EVRGLSLRLQENNVSIDS--NNSRQSSIDELcmkeEALKQRDEMvscLLEELVKVRQGLAESEDQIRNLKAKVEELEEDK 527
Cdd:COG4913 310 ELERLEARLDALREELDEleAQIRGNGGDRL----EQLEREIER---LERELEERERRRARLEALLAALGLPLPASAEEF 382
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 62484427 528 KTLRETTPDnSVAHLQDELIASKLREAEASLSLKDLKQRVQELSSQ 573
Cdd:COG4913 383 AALRAEAAA-LLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
482-735 |
9.02e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.56 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 482 EEALKQRDEMVSCLLEELVKVRQGLAES----EDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDEL--IASKLREAE 555
Cdd:COG5185 256 EKLVEQNTDLRLEKLGENAESSKRLNENannlIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEqeLEESKRETE 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 556 ASLslkdlkQRVQELSSQWQRQLAENQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREMETLT-- 633
Cdd:COG5185 336 TGI------QNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEIla 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 634 ----ELKELRLKVMELETQVQVSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKarEQQHRYSDLESRMKDELMNVKIKF 709
Cdd:COG5185 410 tledTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQS--RLEEAYDEINRSVRSKKEDLNEEL 487
|
250 260
....*....|....*....|....*.
gi 62484427 710 TEQSQTVAELKQEISRLETKNSEMLA 735
Cdd:COG5185 488 TQIESRVSTLKATLEKLRAKLERQLE 513
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
353-760 |
9.23e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 9.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 353 IKLNTKRMKKMEKEYQDLKK---KEQEEMAELRRLRRENCLLKQRNELLEAESAEL--ADRLVRGQVSRAEEEETSYAIQ 427
Cdd:pfam05483 379 LKIITMELQKKSSELEEMTKfknNKEVELEELKKILAEDEKLLDEKKQFEKIAEELkgKEQELIFLLQAREKEIHDLEIQ 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 428 TELMQLRRSYL-----EVSHQLENanEEVRGLSLRLQENNVSIDSNNSRQSSIDelcMKEEALKQRDEMVSCLLEE--LV 500
Cdd:pfam05483 459 LTAIKTSEEHYlkeveDLKTELEK--EKLKNIELTAHCDKLLLENKELTQEASD---MTLELKKHQEDIINCKKQEerML 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 501 KVRQGLAESEDQIRNlkakveELEEDKKTLRETTPDNSVAHLQDEliaSKLREAEASLSLKDLKQRVQELSSQWQRQLAE 580
Cdd:pfam05483 534 KQIENLEEKEMNLRD------ELESVREEFIQKGDEVKCKLDKSE---ENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 581 NQRSESERTTNAVDSTPKKLLTNFFDSSKSSEHTQKLEEELMTTRIREME-TLTELKELRLKVMELETQVQvSTNQLRRQ 659
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiIDNYQKEIEDKKISEEKLLE-EVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62484427 660 DEEHKKLKEELEMAVTRE-KDMSNKAREQQHRYSDLESRMKDELMNVKIKFTEQSQTVAELKQEISRLetKNSEMLAEGE 738
Cdd:pfam05483 684 ADEAVKLQKEIDKRCQHKiAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNI--KAELLSLKKQ 761
|
410 420
....*....|....*....|...
gi 62484427 739 LRANLDDSDKV-RDLQDRLADMK 760
Cdd:pfam05483 762 LEIEKEEKEKLkMEAKENTAILK 784
|
|
| |
