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Conserved domains on  [gi|221330893|ref|NP_729101|]
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uncharacterized protein Dmel_CG42272, isoform C [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vps62 super family cl05569
Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) ...
 367-437 1.30e-05

Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins.


The actual alignment was detected with superfamily member pfam06101:

Pssm-ID: 461828  Cd Length: 539  Bit Score: 48.00  E-value: 1.30e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 221330893  367 WMFYPYSqgktmctvslGP----LGRIPFPavygycLGnrkDIGSHVGDWEHMSLY---FNGdaEPQAMYVSAHDAGA 437
Cdd:pfam06101 341 WIFCPFN----------GPatlkVGLINIP------LG---KIGEHVGDWEHFTLRisnFTG--ELWSVYFSQHSGGE 397
 
Name Accession Description Interval E-value
Vps62 pfam06101
Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) ...
 367-437 1.30e-05

Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins.


Pssm-ID: 461828  Cd Length: 539  Bit Score: 48.00  E-value: 1.30e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 221330893  367 WMFYPYSqgktmctvslGP----LGRIPFPavygycLGnrkDIGSHVGDWEHMSLY---FNGdaEPQAMYVSAHDAGA 437
Cdd:pfam06101 341 WIFCPFN----------GPatlkVGLINIP------LG---KIGEHVGDWEHFTLRisnFTG--ELWSVYFSQHSGGE 397
 
Name Accession Description Interval E-value
Vps62 pfam06101
Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) ...
 367-437 1.30e-05

Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins.


Pssm-ID: 461828  Cd Length: 539  Bit Score: 48.00  E-value: 1.30e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 221330893  367 WMFYPYSqgktmctvslGP----LGRIPFPavygycLGnrkDIGSHVGDWEHMSLY---FNGdaEPQAMYVSAHDAGA 437
Cdd:pfam06101 341 WIFCPFN----------GPatlkVGLINIP------LG---KIGEHVGDWEHFTLRisnFTG--ELWSVYFSQHSGGE 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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