|
Name |
Accession |
Description |
Interval |
E-value |
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
30-620 |
2.80e-98 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 312.75 E-value: 2.80e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 30 FWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVTG-----------NIKMKRDNACYITQDDHH 98
Cdd:TIGR00955 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGsgsvllngmpiDAKEMRAISAYVQQDDLF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 QTLLTVEELMNLACDLKLKNRH---KKAEIMTDILENLHLNHRRNV------TAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVtkkEKRERVDEVLQALGLRKCANTrigvpgRVKGLSGGERKRLAFASELLTDPPLLFC 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRATIPFLRLAQLDCPRHYS 249
Cdd:TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYN 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 250 PSDYIIELVdaedghlvpalsdltengkliyVVSQSEQLAPQQAVTTMFLEQQKRPflpafFAGSAASTDGTLIGGTSAL 329
Cdd:TIGR00955 271 PADFYVQVL----------------------AVIPGSENESRERIEKICDSFAVSD-----IGRDMLVNTNLWSGKAGGL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 330 LEQVKAFSKRlhtdRRDVCGFRQFIVLMRIMLLRITRARLALTIQLFHHLLCGLFFGLIFFQLGN--------QGArMFD 401
Cdd:TIGR00955 324 VKDSENMEGI----GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLtqkgvqniNGA-LFL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 402 HLKFcigavlMIVYTQVMVpILSYPAEVKLVKKETFNRWYTLTPYYMALTVSRLPVQVLLNITFMAVTYWMSGLPQQFWR 481
Cdd:TIGR00955 399 FLTN------MTFQNVFPV-INVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 482 FCIFVAVGLMISLVAEGMGLAIGATFSITN-GSVVGPMLIAPLMglaVYG--FDFAPQVSGGMQLLMKFSYVRVGVVSLV 558
Cdd:TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSmALTVGPPFVIPFL---LFGgfFINSDSIPVYFKWLSYLSWFRYGNEGLL 548
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 559 LAVFGfQREELDC----DAIYCHFSDPrVLLKFLDVEKVSMLHQFGLLAMLMLFFRVMMYISLRKR 620
Cdd:TIGR00955 549 INQWS-DVDNIECtsanTTGPCPSSGE-VILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
15-228 |
9.24e-64 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 208.56 E-value: 9.24e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKErknfWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRD-GVTGNIKMK-------- 85
Cdd:cd03213 4 LSFRNLTVTVKS----SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlGVSGEVLINgrpldkrs 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 86 -RDNACYITQDDHHQTLLTVEELMNLACDLKlknrhkkaeimtdilenlhlnhrrnvtaeKLSGGERKRLSIALELVDNP 164
Cdd:cd03213 80 fRKIIGYVPQDDILHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNP 130
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662800 165 NIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03213 131 SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
32-619 |
8.49e-57 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 203.19 E-value: 8.49e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 32 RVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDGVTGNI----------KMKRDNacYITQDDHHQT 100
Cdd:PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGrIQGNNFTGTIlannrkptkqILKRTG--FVTQDDILYP 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LLTVEELMNLACDLKLKN---RHKKAEIMTDILENLHLNHRRNVTA-----EKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:PLN03211 154 HLTVRETLVFCSLLRLPKsltKQEKILVAESVISELGLTKCENTIIgnsfiRGISGGERKRVSIAHEMLINPSLLILDEP 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRATIPFLRLAQLDCPRHYSPSD 252
Cdd:PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 253 YIIELvdaedGHLVPALSDLTE----NGKLIYVVSQSEQLAPQQAVTtmfLEQQKRPFLPAFFAGSAastdgtliggtsa 328
Cdd:PLN03211 314 FLLDL-----ANGVCQTDGVSErekpNVKQSLVASYNTLLAPKVKAA---IEMSHFPQANARFVGSA------------- 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 329 lleqvkafSKRLHTDRRDVC---GFRQFIVLMRiMLLRITRARLALTIQLFHHLLCGLFFGLIFFQLGnqgarmFDHLKF 405
Cdd:PLN03211 373 --------STKEHRSSDRISistWFNQFSILLQ-RSLKERKHESFNTLRVFQVIAAALLAGLMWWHSD------FRDVQD 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 406 CIGAVLMIVYTQVMVP----ILSYPAEVKLVKKETFNRWYTLTPYYMALTVSRLPVQVLLNITFMAVTYWMSGLPQQFWR 481
Cdd:PLN03211 438 RLGLLFFISIFWGVFPsfnsVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 482 FCIFVAVGLMISLVAEGMGLAIGAtfSITNGSVVGPMLIAPLMGLAVYGFDFAPQVSGGMQLLMKFSYVRVGVVSLVLAV 561
Cdd:PLN03211 518 FLLTLLVLLGYVLVSQGLGLALGA--AIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQ 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662800 562 FGFQRE---ELDCDaiYCHFSDpRVLLKFLDVE---KVSMLHQFGLLAMLMLFFRVMMYISLRK 619
Cdd:PLN03211 596 YGEGKRissLLGCS--LPHGSD-RASCKFVEEDvagQISPATSVSVLIFMFVGYRLLAYLALRR 656
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
17-228 |
4.34e-53 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 180.13 E-value: 4.34e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 17 FQDVYYTVKERKnfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG-VTGNIKM--KRDNAC--- 90
Cdd:cd03232 6 WKNLNYTVPVKG------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGvITGEILIngRPLDKNfqr 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 91 ---YITQDDHHQTLLTVEELMNLACDLKlknrhkkaeimtdilenlhlnhrrnvtaeKLSGGERKRLSIALELVDNPNIF 167
Cdd:cd03232 80 stgYVEQQDVHSPNLTVREALRFSALLR-----------------------------GLSVEQRKRLTIGVELAAKPSIL 130
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAK-GQCVYQG 228
Cdd:cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRgGKTVYFG 192
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
30-228 |
9.00e-53 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 180.54 E-value: 9.00e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 30 FWRVTGE-------RRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG--VTGNI-----KMKR----DNACY 91
Cdd:cd03234 6 WWDVGLKaknwnkyARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgtTSGQIlfngqPRKPdqfqKCVAY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 92 ITQDDHHQTLLTVEELMNLACDLKLKNRHKKAEI--MTDILENLHLNHRR--NVTAEKLSGGERKRLSIALELVDNPNIF 167
Cdd:cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRkkRVEDVLLRDLALTRigGNLVKGISGGERRRVSIAVQLLWDPKVL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-520 |
1.40e-47 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 180.30 E-value: 1.40e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 16 EFQDVYYTVKERKnfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDG--VTGNIKM----KRDNA 89
Cdd:TIGR00956 761 HWRNLTYEVKIKK------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE-RVTTgvITGGDRLvngrPLDSS 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 90 C-----YITQDDHHQTLLTVEELMNLACDLKLKNRHKKAEIMT---DILENLHLNHRRN----VTAEKLSGGERKRLSIA 157
Cdd:TIGR00956 834 FqrsigYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEyveEVIKLLEMESYADavvgVPGEGLNVEQRKRLTIG 913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 158 LELVDNPN-IFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKG-QCVY-----QGSP 230
Cdd:TIGR00956 914 VELVAKPKlLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGgQTVYfgdlgENSH 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 231 RATIPFLRLAQLDCPRHYSPSDYIIELVDAEDGhlvpalSDLTENGKLIYVVSqSEQLAPQQAVTTMFLEQQKRPFLPAF 310
Cdd:TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPG------AHANQDYHEVWRNS-SEYQAVKNELDRLEAELSKAEDDNDP 1066
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 311 FAGSAASTdgtliggtsALLEQVKafskrlhtdrrdVCGFRQFIVLMRImlLRITRARLALTIqlfhhlLCGLFFGLIFF 390
Cdd:TIGR00956 1067 DALSKYAA---------SLWYQFK------------LVLWRTFQQYWRT--PDYLYSKFFLTI------FAALFIGFTFF 1117
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 391 QLGN--QGarmfdhLKFCIGAVLM--IVYTQVMVPILSYPAEVKLV--KKETFNRWYTLTPYYMALTVSRLPVQVLLNIT 464
Cdd:TIGR00956 1118 KVGTslQG------LQNQMFAVFMatVLFNPLIQQYLPPFVAQRDLyeVRERPSRTFSWLAFIAAQITVEIPYNLVAGTI 1191
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 465 FMAVTYWMSGLPQQ-------------FWRFCI-----FVAVGLM-ISL--VAEGMGLAIGATFSITN---GSVVGPMLI 520
Cdd:TIGR00956 1192 FFFIWYYPVGFYWNasktgqvhergvlFWLLSTmfflyFSTLGQMvISFnpNADNAAVLASLLFTMCLsfcGVLAPPSRM 1271
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
35-232 |
2.12e-35 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 133.27 E-value: 2.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-----------DGVTGNIKMKRdNACYITQDDHHQTLLT 103
Cdd:COG1131 11 GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRptsgevrvlgeDVARDPAEVRR-RIGYVPQEPALYPDLT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQ 183
Cdd:COG1131 90 VRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEARRE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 184 CIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:COG1131 170 LWELLRELAAEGKTVLLSTHYLE-EAERLCDRVAIIDKGRIVADGTPDE 217
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
17-228 |
4.16e-35 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 142.29 E-value: 4.16e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 17 FQDVYYTV---KERKNfWRVTGER-RILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG-VTGNIKM-----KR 86
Cdd:PLN03140 870 FDDVNYFVdmpAEMKE-QGVTEDRlQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGyIEGDIRIsgfpkKQ 948
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DN----ACYITQDDHHQTLLTVEELMNLACDLKLKNRHKKAEIMT---DILENLHLNHRRN-------VTAekLSGGERK 152
Cdd:PLN03140 949 ETfariSGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMfvdEVMELVELDNLKDaivglpgVTG--LSTEQRK 1026
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 153 RLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAK-GQCVYQG 228
Cdd:PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRgGQVIYSG 1103
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
34-228 |
5.05e-34 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 128.53 E-value: 5.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 34 TGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFR--RDGVTGNIKMK-----------RDNACYITQDDHHQT 100
Cdd:cd03233 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTegNVSVEGDIHYNgipykefaekyPGEIIYVSEEDVHFP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LLTVEELMNLACDLklknrhkkaeimtdilenlhlnhRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVT 180
Cdd:cd03233 97 TLTVRETLDFALRC-----------------------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 181 AAQCIRLLQAMAYE-GRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03233 154 ALEILKCIRTMADVlKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
16-223 |
5.66e-34 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 128.74 E-value: 5.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 16 EFQDVYYTVKerknfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-----------DGVTGNIKM 84
Cdd:cd03225 1 ELKNLSFSYP--------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGptsgevlvdgkDLTKLSLKE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 KRDNACYITQDDHHQTL-LTVEElmnlacDLK--LKNRHKKAEIM----TDILENLHLNHRRNVTAEKLSGGERKRLSIA 157
Cdd:cd03225 73 LRRKVGLVFQNPDDQFFgPTVEE------EVAfgLENLGLPEEEIeervEEALELVGLEGLRDRSPFTLSGGQKQRVAIA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 158 LELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQ 223
Cdd:cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
28-230 |
5.83e-34 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 129.59 E-value: 5.83e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR----------DGVTGNIKMKRDNACYITQDDH 97
Cdd:COG4555 9 KKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKpdsgsilidgEDVRKEPREARRQIGVLPDERG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTLLTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:COG4555 85 LYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24662800 178 eVTAAQCIR-LLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:COG4555 165 -VMARRLLReILRALKKEGKTVLFSSHIMQ-EVEALCDRVVILHKGKVVAQGSL 216
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
15-223 |
9.13e-33 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 125.29 E-value: 9.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV-------T 79
Cdd:cd03255 1 IELKNLSKTYGGGGE------KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRptsgevrvDGTdisklseK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 GNIKMKRDNACYITQDDHHQTLLTVEELMNLACDL---KLKNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSI 156
Cdd:cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLagvPKKERRERAE---ELLERVGLGDRLNHYPSELSGGQQQRVAI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 157 ALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMA-YEGRTIVCTIHQPSatIYNYFDSIYVLAKGQ 223
Cdd:cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNkEAGTTIVVVTHDPE--LAEYADRIIELRDGK 217
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
15-232 |
1.33e-32 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 125.14 E-value: 1.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYtvkerknfwRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVT---GNIK 83
Cdd:COG1122 1 IELENLSF---------SYPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKptsgevlvDGKDitkKNLR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MKRDNACYITQDDHHQtLL--TVEE-----LMNLACDlklknrhkKAEIM---TDILENLHLNHRRNVTAEKLSGGERKR 153
Cdd:COG1122 72 ELRRKVGLVFQNPDDQ-LFapTVEEdvafgPENLGLP--------REEIRervEEALELVGLEHLADRPPHELSGGQKQR 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSAtIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:COG1122 143 VAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDL-VAELADRVIVLDDGRIVADGTPRE 220
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
34-530 |
2.86e-31 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 130.61 E-value: 2.86e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 34 TGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIS----GFRRdGVTGNI-----------KMKRDNACYITQDDHH 98
Cdd:TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHI-GVEGVItydgitpeeikKHYRGDVVYNAETDVH 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 QTLLTVEELMNLACDLKLKN-------RHKKAEIMTD-ILENLHLNHRRNVTA-----EKLSGGERKRLSIALELVDNPN 165
Cdd:TIGR00956 150 FPHLTVGETLDFAARCKTPQnrpdgvsREEYAKHIADvYMATYGLSHTRNTKVgndfvRGVSGGERKRVSIAEASLGGAK 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 166 IFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIV-CTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRATIPFLRLAQLDC 244
Cdd:TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPlVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKC 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 245 PRHYSPSDYIIELVDAEDGHLVPAlsdltengkliyvvsqSEQLAPQ--QAVTTMFLE----QQKRPFLPAFFAGSAAST 318
Cdd:TIGR00956 310 PDRQTTADFLTSLTSPAERQIKPG----------------YEKKVPRtpQEFETYWRNspeyAQLMKEIDEYLDRCSESD 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 319 DGTLIgGTSALLEQVKA---FSKrlHTdrrdVCGFRQFIVLMRIMLLRITRARLALTIQLFHHLLCGLFFGLIFFQLgnq 395
Cdd:TIGR00956 374 TKEAY-RESHVAKQSKRtrpSSP--YT----VSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL--- 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 396 gaRMFDHLKFCIGAVLMIvytQVMVPILSYPAEVKL-------VKKetfNRWYTLTP---YYMALTVSRLPVQVLLNITF 465
Cdd:TIGR00956 444 --PKNTSDFYSRGGALFF---AILFNAFSSLLEIASmyearpiVEK---HRKYALYHpsaDAIASIISEIPFKIIESVVF 515
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 466 MAVTYWMSGLPQQFWRFCIFVAVGLMISLVAEGMGLAIGA-TFSITNGSVVGPMLiapLMGLAVYG 530
Cdd:TIGR00956 516 NIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAvTKTLSEAMTPAAIL---LLALSIYT 578
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
35-234 |
3.17e-31 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 121.73 E-value: 3.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMKRDNAC-------YITQddhHQTL-----L 102
Cdd:COG1121 17 GGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPP-TSGTVRLFGKPPRrarrrigYVPQ---RAEVdwdfpI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEE--LMNLACDLKLKNRHKKA--EIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:COG1121 93 TVRDvvLMGRYGRRGLFRRPSRAdrEAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 179 VTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQcVYQGSPRATI 234
Cdd:COG1121 173 ATEEALYELLRELRREGKTILVVTHDLG-AVREYFDRVLLLNRGL-VAHGPPEEVL 226
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
28-223 |
3.98e-30 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 115.80 E-value: 3.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMkrdnacyitqDDHHQTLLTVEEL 107
Cdd:cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILI----------DGKDIAKLPLEEL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 mnlacdlklknrhkkaeimtdilenlhlnHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRL 187
Cdd:cd00267 72 -----------------------------RRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
|
170 180 190
....*....|....*....|....*....|....*.
gi 24662800 188 LQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQ 223
Cdd:cd00267 123 LRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
15-225 |
7.76e-30 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 117.45 E-value: 7.76e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNI---- 82
Cdd:COG1136 5 LELRNL------TKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRptsgevliDGQ--DIssls 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 83 -----KMKRDNACYITQdDHHqtL---LTVEE---LMNLACDLKLKNRHKKAEimtDILENLHLNHRRNVTAEKLSGGER 151
Cdd:COG1136 77 erelaRLRRRHIGFVFQ-FFN--LlpeLTALEnvaLPLLLAGVSRKERRERAR---ELLERVGLGDRLDHRPSQLSGGQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 152 KRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSatIYNYFDSIYVLAKGQCV 225
Cdd:COG1136 151 QRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVTHDPE--LAARADRVIRLRDGRIV 223
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
28-230 |
3.91e-29 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 115.29 E-value: 3.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRV--TGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTGNIKMKRDNACYITQD 95
Cdd:cd03263 4 RNLTKTykKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRptsgtayiNGysIRTDRKAARQSLGYCPQF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 DHHQTLLTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 176 LDEVTAAQCIRLLQAMAyEGRTIVCTIHQPsATIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:cd03263 164 LDPASRRAIWDLILEVR-KGRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSP 216
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
35-234 |
6.03e-29 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 115.53 E-value: 6.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNI-KMK-RDNAC---YITQDDHHQTL 101
Cdd:COG1120 12 GGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKpssgevllDGR--DLaSLSrRELARriaYVPQEPPAPFG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEEL--MNLACDLKLKNRHKKA--EIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:COG1120 90 LTVRELvaLGRYPHLGLFGRPSAEdrEAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTSHLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 178 EVTAAQCIRLLQAMAYE-GRTIVCTIHQPS-AtiYNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:COG1120 170 LAHQLEVLELLRRLARErGRTVVMVLHDLNlA--ARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
35-205 |
1.35e-28 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 113.34 E-value: 1.35e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMK-----------RDNACYITQDDHHQTLLT 103
Cdd:COG4133 13 GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPP-SAGEVLWNgepirdaredyRRRLAYLGHADGLKPELT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEElmNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQ 183
Cdd:COG4133 92 VRE--NLRFWAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVAL 169
|
170 180
....*....|....*....|..
gi 24662800 184 CIRLLQAMAYEGRTIVCTIHQP 205
Cdd:COG4133 170 LAELIAAHLARGGAVLLTTHQP 191
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
28-223 |
1.40e-28 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 113.37 E-value: 1.40e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIKMK------------RDNACYITQd 95
Cdd:COG4619 4 EGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDP-PTSGEIYLDgkplsampppewRRQVAYVPQ- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 dhhQTLL---TVEElmNLACDLKLKNRHKKAEIMTDILENLHLNHR-RNVTAEKLSGGERKRLSIALELVDNPNIFFLDE 171
Cdd:COG4619 82 ---EPALwggTVRD--NLPFPFQLRERKFDRERALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQPDVLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24662800 172 PTSGLDEVTAAQCIRLLQA-MAYEGRTIVCTIHQPsATIYNYFDSIYVLAKGQ 223
Cdd:COG4619 157 PTSALDPENTRRVEELLREyLAEEGRAVLWVSHDP-EQIERVADRVLTLEAGR 208
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
35-222 |
1.93e-28 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 113.01 E-value: 1.93e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGVtgNIKMKRDNACYITQddHHQTL----L 102
Cdd:cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLlkptsgsiRVFGK--PLEKERKRIGYVPQ--RRSIDrdfpI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEELMNLACDLKL----KNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:cd03235 86 SVRDVVLMGLYGHKglfrRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24662800 179 VTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKG 222
Cdd:cd03235 166 KTQEDIYELLRELRREGMTILVVTHDLGLVL-EYFDRVLLLNRT 208
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
35-228 |
5.84e-28 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 110.60 E-value: 5.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIKMkrdnacyitqDDHhqtlltveelmNLAcDL 114
Cdd:cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILL----------DGK-----------DLA-SL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 115 KLKNRHKKAEIMTDILENLHLNH--RRNVTAekLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMA 192
Cdd:cd03214 67 SPKELARKIAYVPQALELLGLAHlaDRPFNE--LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
|
170 180 190
....*....|....*....|....*....|....*..
gi 24662800 193 YE-GRTIVCTIHQPSATiYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03214 145 RErGKTVVMVLHDLNLA-ARYADRVILLKDGRIVAQG 180
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
40-174 |
6.99e-28 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 109.27 E-value: 6.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGV---TGNIKMKRDNACYITQDDHHQTLLTVEE-L 107
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLlsptegtiLLDGQdltDDERKSLRKEIGYVFQDPQLFPRLTVREnL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 108 MNLACDLKLKNRHKKAEiMTDILENL---HLNHRR-NVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTS 174
Cdd:pfam00005 81 RLGLLLKGLSKREKDAR-AEEALEKLglgDLADRPvGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
15-223 |
3.46e-27 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 108.24 E-value: 3.46e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIKM---------- 84
Cdd:cd03228 1 IEFKNVSFSYPGR--------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIdgvdlrdldl 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 --KRDNACYITQDDHhqtlltveeLMNlacdlklknrhkkaeimTDILENLhlnhrrnvtaekLSGGERKRLSIALELVD 162
Cdd:cd03228 72 esLRKNIAYVPQDPF---------LFS-----------------GTIRENI------------LSGGQRQRIAIARALLR 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 163 NPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIyNYFDSIYVLAKGQ 223
Cdd:cd03228 114 DPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLS-TI-RDADRIIVLDDGR 171
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
27-230 |
3.73e-27 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 110.22 E-value: 3.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 27 RKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-DGvtGNIKMK-RDnacyITQDDHH------ 98
Cdd:cd03219 7 TKRF----GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRpTS--GSVLFDgED----ITGLPPHeiarlg 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 -----QTL-----LTVEELMNLAC-------DLKLKNRHKKAEIM---TDILENLHLNHRRNVTAEKLSGGERKRLSIAL 158
Cdd:cd03219 77 igrtfQIPrlfpeLTVLENVMVAAqartgsgLLLARARREEREAReraEELLERVGLADLADRPAGELSYGQQRRLEIAR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 159 ELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSAtIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGRVIAEGTP 227
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
35-223 |
2.74e-26 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 105.56 E-value: 2.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTGNIKMKRDNACYITQDDHHQTLLTV 104
Cdd:cd03230 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKpdsgeikvLGkdIKKEPEEVKRRIGYLPEEPSLYENLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EElmnlacdlklknrhkkaeimtdileNLhlnhrrnvtaeKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQC 184
Cdd:cd03230 91 RE-------------------------NL-----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134
|
170 180 190
....*....|....*....|....*....|....*....
gi 24662800 185 IRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQ 223
Cdd:cd03230 135 WELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGR 172
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
356-558 |
3.08e-26 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 106.59 E-value: 3.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 356 LMRIMLLRITRARLALTIQLFHHLLCGLFFGLIFFQLGNQGARMFDhLKFCIGAVLMIVYTQVMVPILSYPAEVKLVKKE 435
Cdd:pfam01061 1 LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLFGNLGNQQGGLNR-PGLLFFSILFNAFSALSGISPVFEKERGVLYRE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 436 TFNRWYTLTPYYMALTVSRLPVQVLLNITFMAVTYWMSGLPQQFWRFCIFVAVGLMISLVAEGMGLAIGA-TFSITNGSV 514
Cdd:pfam01061 80 LASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGRFFLFLLVLLLTALAASSLGLFISAlAPSFEDASQ 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24662800 515 VGPMLIAPLMGLAVYGFDFaPQVSGGMQLLMKFSYVRVGVVSLV 558
Cdd:pfam01061 160 LGPLVLLPLLLLSGFFIPI-DSMPVWWQWIYYLNPLTYAIEALR 202
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
15-238 |
5.58e-26 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 106.82 E-value: 5.58e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYytvkerKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNI-KMK 85
Cdd:cd03261 1 IELRGLT------KSF----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRpdsgevliDGE--DIsGLS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 86 R---------------DNACYitqDDhhqtlLTVEElmNLACDLKLKNRHKKAEIMTDILENLH---LNHRRNVTAEKLS 147
Cdd:cd03261 69 EaelyrlrrrmgmlfqSGALF---DS-----LTVFE--NVAFPLREHTRLSEEEIREIVLEKLEavgLRGAEDLYPAELS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 148 GGERKRLSIALELVDNPNIFFLDEPTSGLDEVTA---AQCIRLLQAmAYEGRTIVCTiHQPSaTIYNYFDSIYVLAKGQC 224
Cdd:cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASgviDDLIRSLKK-ELGLTSIMVT-HDLD-TAFAIADRIAVLYDGKI 215
|
250
....*....|....*...
gi 24662800 225 VYQGSPRA----TIPFLR 238
Cdd:cd03261 216 VAEGTPEElrasDDPLVR 233
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
35-228 |
2.21e-25 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 104.20 E-value: 2.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGqLSAIMGPSGAGKSSLLNAISG--------FRRDG--VTGNIKMKRDNACYITQDDHHQTLLTV 104
Cdd:cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATltppssgtIRIDGqdVLKQPQKLRRRIGYLPQEFGVYPNFTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EELMNLACDLK-LKNRHKKAEImTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDevtAAQ 183
Cdd:cd03264 90 REFLDYIAWLKgIPSKEVKARV-DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD---PEE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24662800 184 CIR---LLQAMAyEGRTIVCTIHQPSATIYNYfDSIYVLAKGQCVYQG 228
Cdd:cd03264 166 RIRfrnLLSELG-EDRIVILSTHIVEDVESLC-NQVAVLNKGKLVFEG 211
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
35-271 |
5.82e-25 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 108.84 E-value: 5.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG--VTGNIKMKRDN------------ACYITQDDHHQ- 99
Cdd:COG1123 17 GDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgrISGEVLLDGRDllelsealrgrrIGMVFQDPMTQl 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 TLLTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:COG1123 97 NPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDVT 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 180 TAAQCIRLLQAMAYE-GRTIVCTIHQPsATIYNYFDSIYVLAKGQCVYQGSPR---------ATIPFLRLAQLDCPRHYS 249
Cdd:COG1123 177 TQAEILDLLRELQRErGTTVLLITHDL-GVVAEIADRVVVMDDGRIVEDGPPEeilaapqalAAVPRLGAARGRAAPAAA 255
|
250 260
....*....|....*....|....*...
gi 24662800 250 PSDYIIELVD------AEDGHLVPALSD 271
Cdd:COG1123 256 AAEPLLEVRNlskrypVRGKGGVRAVDD 283
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
35-203 |
3.68e-24 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 100.41 E-value: 3.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGNIKMKRDNACYITQD-DHHQTLLTVE 105
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKessgsillNGKPIKAKERRKSIGYVMQDvDYQLFTDSVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 106 ElmnlACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI 185
Cdd:cd03226 91 E----ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
|
170
....*....|....*...
gi 24662800 186 RLLQAMAYEGRTIVCTIH 203
Cdd:cd03226 167 ELIRELAAQGKAVIVITH 184
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
35-230 |
6.94e-24 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 106.00 E-value: 6.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVT-GNIKMK--RDNACYITQDDH--HQTL 101
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPpysgsiliNGVDlSDLDPAswRRQIAWVPQNPYlfAGTI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 L----------TVEELMNLAcdlklknrhKKAEImTDILENLH--LNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:COG4988 428 RenlrlgrpdaSDEELEAAL---------EAAGL-DEFVAALPdgLDTPLGEGGRGLSGGQAQRLALARALLRDAPLLLL 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAyEGRT-IVCTiHQPSATiyNYFDSIYVLAKGQCVYQGSP 230
Cdd:COG4988 498 DEPTAHLDAETEAEILQALRRLA-KGRTvILIT-HRLALL--AQADRILVLDDGRIVEQGTH 555
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
35-230 |
1.48e-23 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 99.54 E-value: 1.48e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDGvtGNIKMK-------------RDNACYITQDdhhQT 100
Cdd:cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLvKPDS--GKILLDgqditklpmhkraRLGIGYLPQE---AS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 L---LTVEElmNLACDLKL-----KNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:cd03218 86 IfrkLTVEE--NILAVLEIrglskKEREEKLE---ELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSP 230
Cdd:cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL-SITDRAYIIYEGKVLAEGTP 217
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
35-232 |
2.12e-23 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 99.56 E-value: 2.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGN------IKMKRDNACYITQDDHHQT 100
Cdd:cd03256 12 NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEptsgsvliDGTDINklkgkaLRQLRRQIGMIFQQFNLIE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LLTVEE--LMNLACDLK----LKNRHKKAEIMT--DILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:cd03256 92 RLSVLEnvLSGRLGRRStwrsLFGLFPKEEKQRalAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSAtIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:cd03256 172 VASLDPASSRQVMDLLKRINREeGITVIVSLHQVDL-AREYADRIVGLKDGRIVFDGPPAE 231
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
15-238 |
3.22e-23 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 98.90 E-value: 3.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-DgvTGNIKMKRDNACYIT 93
Cdd:COG1127 6 IEVRNL------TKSF----GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRpD--SGEILVDGQDITGLS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 94 QDDHHQTL---------------LTVEElmNLACDLKLKNRHKKAEIMTDILENLHLnhrrnV----TAEK----LSGGE 150
Cdd:COG1127 74 EKELYELRrrigmlfqggalfdsLTVFE--NVAFPLREHTDLSEAEIRELVLEKLEL-----VglpgAADKmpseLSGGM 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 151 RKRLSIALELVDNPNIFFLDEPTSGLDEVTAA---QCIRLLQAmAYEGRTIVCTiHQpSATIYNYFDSIYVLAKGQCVYQ 227
Cdd:COG1127 147 RKRVALARALALDPEILLYDEPTAGLDPITSAvidELIRELRD-ELGLTSVVVT-HD-LDSAFAIADRVAVLADGKIIAE 223
|
250
....*....|....*
gi 24662800 228 GSP----RATIPFLR 238
Cdd:COG1127 224 GTPeellASDDPWVR 238
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
28-223 |
1.73e-22 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 94.95 E-value: 1.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDGvtGNIkmkrdnacYItqDDhhqtlltveE 106
Cdd:cd03229 4 KNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLeEPDS--GSI--------LI--DG---------E 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 107 LMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIR 186
Cdd:cd03229 63 DLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI-ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA 141
|
170 180 190
....*....|....*....|....*....|....*...
gi 24662800 187 LLQAMAYE-GRTIVCTIHQPSATIYnYFDSIYVLAKGQ 223
Cdd:cd03229 142 LLKSLQAQlGITVVLVTHDLDEAAR-LADRVVVLRDGK 178
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
28-228 |
2.28e-22 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 95.66 E-value: 2.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTGNIKMKRDNAcYITQDD- 96
Cdd:cd03259 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERpdsgeiliDGrdVTGVPPERRNIG-MVFQDYa 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 --HHqtlLTVEElmNLACDLKLK-----NRHKKAEIMTDILENLHLNHRRnvtAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:cd03259 83 lfPH---LTVAE--NIAFGLKLRgvpkaEIRARVRELLELVGLEGLLNRY---PHELSGGQQQRVALARALAREPSLLLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPsATIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03259 155 DEPLSALDAKLREELREELKELQRElGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
35-231 |
3.57e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 100.61 E-value: 3.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIKMK------------RDNACYITQDDH--HQT 100
Cdd:COG4987 346 AGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFL-DPQSGSITLGgvdlrdldeddlRRRIAVVPQRPHlfDTT 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LL----------TVEELMNLACDLKLknrhkkaeimTDILENLH--LNHRRNVTAEKLSGGERKRLSIALELVDNPNIFF 168
Cdd:COG4987 425 LRenlrlarpdaTDEELWAALERVGL----------GDWLAALPdgLDTWLGEGGRRLSGGERRRLALARALLRDAPILL 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24662800 169 LDEPTSGLDEVTAAQCIRLLQAmAYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQCVYQGSPR 231
Cdd:COG4987 495 LDEPTEGLDAATEQALLADLLE-ALAGRTVLLITHRLAGL--ERMDRILVLEDGRIVEQGTHE 554
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
38-197 |
7.98e-22 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 94.34 E-value: 7.98e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 38 RILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNI----------------KMKRDNACYITQddHHQTL 101
Cdd:TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVlfngqslsklssneraKLRNKKLGFIYQ--FHHLL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEELMNLACDLKLKNRHKK--AEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:TIGR02211 96 PDFTALENVAMPLLIGKKSVKeaKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
|
170
....*....|....*...
gi 24662800 180 TAAQCIRLLQAMAYEGRT 197
Cdd:TIGR02211 176 NAKIIFDLMLELNRELNT 193
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
40-263 |
8.09e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 95.53 E-value: 8.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMK--------------RDNACYITQDDHHQTLL-TV 104
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-TSGEVLIKgepikydkksllevRKTVGIVFQNPDDQLFApTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EE-----LMNLACDL-KLKNRHKKAeimtdiLENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:PRK13639 97 EEdvafgPLNLGLSKeEVEKRVKEA------LKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 179 VTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSPR---ATIPFLRLAQLDCPRhyspSDYII 255
Cdd:PRK13639 171 MGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKevfSDIETIRKANLRLPR----VAHLI 245
|
....*...
gi 24662800 256 ELVDAEDG 263
Cdd:PRK13639 246 EILNKEDN 253
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
35-230 |
1.08e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 94.70 E-value: 1.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMK---------RDNACYIT---QddHHQTL- 101
Cdd:PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGdkpismlssRQLARRLAllpQ--HHLTPe 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 -LTVEEL--------MNLACDLKLKNRHKKAEIMtdilENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:PRK11231 90 gITVRELvaygrspwLSLWGRLSAEDNARVNQAM----EQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH---QPSatiyNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK11231 166 TTYLDINHQVELMRLMRELNTQGKTVVTVLHdlnQAS----RYCDHLVVLANGHVMAQGTP 222
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
28-228 |
1.32e-21 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 93.44 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG----------FRRDGVTGNIKMKRDNACYITQDDH 97
Cdd:cd03268 8 KTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGlikpdsgeitFDGKSYQKNIEALRRIGALIEAPGF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTLLTVEELMNLACDLKLKnrhkKAEIMtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:cd03268 84 YPNLTARENLRLLARLLGIR----KKRID-EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24662800 178 EVTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-230 |
1.50e-21 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 99.14 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 2 EQSQNLLAKQSKNVEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGN 81
Cdd:COG2274 461 GRSKLSLPRLKGDIELENVSFRYPGD--------SPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEP-TSGR 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 82 IK-----MK-------RDNACYITQDDH--HQTLL----------TVEELMNLAcdlklknrhKKAEIMTDILE-----N 132
Cdd:COG2274 532 ILidgidLRqidpaslRRQIGVVLQDVFlfSGTIRenitlgdpdaTDEEIIEAA---------RLAGLHDFIEAlpmgyD 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 133 LHLNHRrnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIYNy 212
Cdd:COG2274 603 TVVGEG----GSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAHRLS-TIRL- 675
|
250
....*....|....*...
gi 24662800 213 FDSIYVLAKGQCVYQGSP 230
Cdd:COG2274 676 ADRIIVLDKGRIVEDGTH 693
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
49-228 |
1.79e-21 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 93.13 E-value: 1.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 49 NGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVT---GNIKM----KRDNACYITQDDHHQTLLTVEElmNLACD 113
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKpdggtivlNGTVlfdSRKKInlppQQRKIGLVFQQYALFPHLNVRE--NLAFG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 114 LKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMA- 192
Cdd:cd03297 100 LKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKk 179
|
170 180 190
....*....|....*....|....*....|....*..
gi 24662800 193 -YEGRTIVCTiHQPSaTIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03297 180 nLNIPVIFVT-HDLS-EAEYLADRIVVMEDGRLQYIG 214
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
35-205 |
2.20e-21 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 92.30 E-value: 2.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMKRD-NACYITQ----DDhhqTL-LTVEEL- 107
Cdd:NF040873 3 GGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRP-TSGTVRRAGGaRVAYVPQrsevPD---SLpLTVRDLv 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 -MNLACDLKLKNRHKKAE--IMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQC 184
Cdd:NF040873 79 aMGRWARRGLWRRLTRDDraAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRERI 158
|
170 180
....*....|....*....|.
gi 24662800 185 IRLLQAMAYEGRTIVCTIHQP 205
Cdd:NF040873 159 IALLAEEHARGATVVVVTHDL 179
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
40-231 |
2.31e-21 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 93.17 E-value: 2.31e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDG--VTGNIKMKRDNAcYITQDDHHQTLLTVEElmN 109
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFikpdsgkiLLNGkdITNLPPEKRDIS-YVPQNYALFPHMTVYK--N 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 110 LACDLKLKnRHKKAEI---MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIR 186
Cdd:cd03299 92 IAYGLKKR-KVDKKEIerkVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLRE 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24662800 187 LLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPR 231
Cdd:cd03299 171 ELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
35-232 |
2.43e-21 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 92.88 E-value: 2.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIKMK-------------RDNACYITQDDHHQTL 101
Cdd:cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDgrditglppheraRAGIGYVPEGRRIFPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEElmNLACDLKLKNRHKKAEIMTDILENL-HLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVT 180
Cdd:cd03224 90 LTVEE--NLLLGAYARRRAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 24662800 181 AAQCIRLLQAMAYEGRTIVcTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:cd03224 168 VEEIFEAIRELRDEGVTIL-LVEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
40-273 |
3.29e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 94.14 E-value: 3.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNI-------------KMK-RDNACYITQDDHHQ--TLLT 103
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRIlfdgkpidysrkgLMKlRESVGMVFQDPDNQlfSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEELMNLACDLKL--KNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTA 181
Cdd:PRK13636 101 YQDVSFGAVNLKLpeDEVRKRVD---NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 182 AQCIRLLQAMAYE-GRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSPR---ATIPFLRLAQLDCPRhyspSDYIIEL 257
Cdd:PRK13636 178 SEIMKLLVEMQKElGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKevfAEKEMLRKVNLRLPR----IGHLMEI 252
|
250
....*....|....*.
gi 24662800 258 VDAEDGHLVPALsDLT 273
Cdd:PRK13636 253 LKEKDGFVFDEL-DLT 267
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
15-229 |
5.29e-21 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 92.26 E-value: 5.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV----TGNI 82
Cdd:cd03258 2 IELKNV------SKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERptsgsvlvDGTdltlLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 83 KMK--RDNACYITQddhHQTLL---TVEElmNLACDLKLKnRHKKAEIMTDILENLH---LNHRRNVTAEKLSGGERKRL 154
Cdd:cd03258 76 ELRkaRRRIGMIFQ---HFNLLssrTVFE--NVALPLEIA-GVPKAEIEERVLELLElvgLEDKADAYPAQLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 155 SIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGS 229
Cdd:cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGT 224
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
15-230 |
7.40e-21 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 91.91 E-value: 7.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKerknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SG--------------- 72
Cdd:cd03253 1 IEFENVTFAYD---------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLfrfydvsSGsilidgqdirevtld 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 73 -FRR-------------DGVTGNIKMKRDNAcyitqddhhqtllTVEELMNLAcdlklknrhKKAEImTDILENLHLNHR 138
Cdd:cd03253 72 sLRRaigvvpqdtvlfnDTIGYNIRYGRPDA-------------TDEEVIEAA---------KAAQI-HDKIMRFPDGYD 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 139 RNVtAE---KLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIYNYfDS 215
Cdd:cd03253 129 TIV-GErglKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLS-TIVNA-DK 204
|
250
....*....|....*
gi 24662800 216 IYVLAKGQCVYQGSP 230
Cdd:cd03253 205 IIVLKDGRIVERGTH 219
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
15-203 |
1.15e-20 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 90.88 E-value: 1.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKerknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNI-KMK 85
Cdd:COG2884 2 IRFENVSKRYP---------GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERptsgqvlvNGQ--DLsRLK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 86 RDNACY-------ITQDdhHQTL--LTVEElmNLACDLKLkNRHKKAEIMT---DILENLHLNHRRNVTAEKLSGGERKR 153
Cdd:COG2884 71 RREIPYlrrrigvVFQD--FRLLpdRTVYE--NVALPLRV-TGKSRKEIRRrvrEVLDLVGLSDKAKALPHELSGGEQQR 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH 203
Cdd:COG2884 146 VAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATH 195
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
35-228 |
1.18e-20 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 91.03 E-value: 1.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFR-----------RDGVTGNIKMKRDNACYIT---QDDHH-- 98
Cdd:cd03257 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLkptsgsiifdgKDLLKLSRRLRKIRRKEIQmvfQDPMSsl 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 QTLLTVEELMN--LACDLKLKNRHKKAEIMTDILENLHLNHRRnvtAEK----LSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:cd03257 96 NPRMTIGEQIAepLRIHGKLSKKEARKEAVLLLLVGVGLPEEV---LNRypheLSGGQRQRVAIARALALNPKLLIADEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSAtIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03257 173 TSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGV-VAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
35-199 |
1.29e-20 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 90.61 E-value: 1.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDG--VTGnikmkRDNAC-YITQDDhhqTLL- 102
Cdd:cd03293 15 GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLerptsgevLVDGepVTG-----PGPDRgYVFQQD---ALLp 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 --TVEElmNLACDLKLKnRHKKAEIMT---DILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:cd03293 87 wlTVLD--NVALGLELQ-GVPKAEAREraeELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
|
170 180
....*....|....*....|...
gi 24662800 178 EVTAAQCIRLLQAMAYE-GRTIV 199
Cdd:cd03293 164 ALTREQLQEELLDIWREtGKTVL 186
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
35-230 |
1.42e-20 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 91.18 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDgvTGNIKMK-------------RDNACYITQDDHHQT 100
Cdd:TIGR04406 12 KKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLvRPD--AGKILIDgqdithlpmheraRLGIGYLPQEASIFR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LLTVEElmNLACDLKLKNRHKKAEI---MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:TIGR04406 90 KLTVEE--NIMAVLEIRKDLDRAEReerLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPFAGVD 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24662800 178 EVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSP 230
Cdd:TIGR04406 168 PIAVGDIKKIIKHLKERGIGVLITDHNVRETL-DICDRAYIISDGKVLAEGTP 219
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
35-177 |
1.76e-20 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 90.86 E-value: 1.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDGvtGNIKMKRDNacyITQDDHHQT-------L----- 101
Cdd:COG1137 14 GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLvKPDS--GRIFLDGED---ITHLPMHKRarlgigyLpqeas 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 ----LTVEElmNLACDLKL--KNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:COG1137 89 ifrkLTVED--NILAVLELrkLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFAG 166
|
..
gi 24662800 176 LD 177
Cdd:COG1137 167 VD 168
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
35-234 |
1.96e-20 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 91.33 E-value: 1.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIKMKRDNacyITQDDHHQ------------TL- 101
Cdd:COG4559 12 GGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELT-PSSGEVRLNGRP---LAAWSPWElarrravlpqhsSLa 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 --LTVEE--LMNLA--CDLKLKNRHKKAEIM--TDILenlHLNHRRNVTaekLSGGERKRLSIA------LELVDN-PNI 166
Cdd:COG4559 88 fpFTVEEvvALGRAphGSSAAQDRQIVREALalVGLA---HLAGRSYQT---LSGGEQQRVQLArvlaqlWEPVDGgPRW 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 167 FFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:COG4559 162 LFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNLAA-QYADRILLLHQGRLVAQGTPEEVL 228
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
15-199 |
2.76e-20 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 90.92 E-value: 2.76e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGVTgnIKMKR 86
Cdd:COG1116 8 LELRGV------SKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLekptsgevLVDGKP--VTGPG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DNACYITQDDhhqTLL---TVEElmNLACDLKLKNRHKKA--EIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELV 161
Cdd:COG1116 80 PDRGVVFQEP---ALLpwlTVLD--NVALGLELRGVPKAErrERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24662800 162 DNPNIFFLDEPTSGLDEVTAAQ----CIRLLQAmayEGRTIV 199
Cdd:COG1116 155 NDPEVLLMDEPFGALDALTRERlqdeLLRLWQE---TGKTVL 193
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
35-230 |
2.78e-20 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 90.51 E-value: 2.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT-GNIKMKRDNacyITQddhhqtlLTVEE------- 106
Cdd:COG0396 11 EGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKYEVTsGSILLDGED---ILE-------LSPDEraragif 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 107 -------------LMNLacdLKL-KNRHKKAEI--------MTDILENLHLNH---RRNVtAEKLSGGERKRLSIALELV 161
Cdd:COG0396 81 lafqypveipgvsVSNF---LRTaLNARRGEELsareflklLKEKMKELGLDEdflDRYV-NEGFSGGEKKRNEILQMLL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 162 DNPNIFFLDEPTSGLDeVTAAQCI-RLLQAMAYEGRTIVCTIHQPsaTIYNYF--DSIYVLAKGQCVYQGSP 230
Cdd:COG0396 157 LEPKLAILDETDSGLD-IDALRIVaEGVNKLRSPDRGILIITHYQ--RILDYIkpDFVHVLVDGRIVKSGGK 225
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
28-234 |
1.07e-19 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 88.80 E-value: 1.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDgvTGNIKMKRDNAC-------------YIT 93
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIvPRD--AGNIIIDDEDISllplhararrgigYLP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 94 QDDHHQTLLTV-EELM---NLACDLKLKNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:PRK10895 85 QEASIFRRLSVyDNLMavlQIRDDLSAEQREDRAN---ELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:PRK10895 162 DEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
14-231 |
1.14e-19 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 88.44 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 14 NVEFQDVYYTVKErknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGN---I 82
Cdd:cd03254 2 EIEFENVNFSYDE---------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDpqkgqiliDGIDIRdisR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 83 KMKRDNACYITQDDH-----------HQTLLTVEELMNLACdlklknrhkKAEIMTDILENL------HLNHRrnvtAEK 145
Cdd:cd03254 73 KSLRSMIGVVLQDTFlfsgtimenirLGRPNATDEEVIEAA---------KEAGAHDFIMKLpngydtVLGEN----GGN 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 146 LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAqciRLLQAMA--YEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQ 223
Cdd:cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK---LIQEALEklMKGRTSIIIAHRLS-TIKNA-DKILVLDDGK 214
|
....*...
gi 24662800 224 CVYQGSPR 231
Cdd:cd03254 215 IIEEGTHD 222
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
15-232 |
1.21e-19 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 92.66 E-value: 1.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKnfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV------TG 80
Cdd:COG1123 261 LEVRNLSKRYPVRG-----KGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRptsgsilfDGKdltklsRR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 81 NIKMKRDNACYITQDDHHQ--TLLTVEELMNLACDL-KLKNRHKKAEIMTDILENLHLNHRrnvTAEK----LSGGERKR 153
Cdd:COG1123 336 SLRELRRRVQMVFQDPYSSlnPRMTVGDIIAEPLRLhGLLSRAERRERVAELLERVGLPPD---LADRypheLSGGQRQR 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:COG1123 413 VAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEDGPTEE 491
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
15-228 |
1.45e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 86.60 E-value: 1.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIsgfrrdgvTGNIkmkrdnacyitQ 94
Cdd:cd03247 1 LSINNVSFSYPEQ--------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL--------TGDL-----------K 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDHHQTLLTVEELMNLACDLklknRHKKAEIM-------TDILENLhlnhrrnvtAEKLSGGERKRLSIALELVDNPNIF 167
Cdd:cd03247 54 PQQGEITLDGVPVSDLEKAL----SSLISVLNqrpylfdTTLRNNL---------GRRFSGGERQRLALARILLQDAPIV 120
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSATiyNYFDSIYVLAKGQCVYQG 228
Cdd:cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGI--EHMDKILFLENGKIIMQG 178
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
28-260 |
1.56e-19 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 88.32 E-value: 1.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGNIKMKRDNAC---YITQD- 95
Cdd:COG1124 9 VSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERpwsgevtfDGRPVTRRRRKAFRRrvqMVFQDp 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 ----DHHQTLLTVeelmnLACDLKLKNRHKKAEIMTDILENLHLNHR-RNVTAEKLSGGERKRLSIALELVDNPNIFFLD 170
Cdd:COG1124 89 yaslHPRHTVDRI-----LAEPLRIHGLPDREERIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARALILEPELLLLD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 171 EPTSGLDEVTAAQCIRLLQAM-AYEGRTIVCTIHQPsATIYNYFDSIYVLAKGQCVYQGSPRATipflrlaqLDCPRHys 249
Cdd:COG1124 164 EPTSALDVSVQAEILNLLKDLrEERGLTYLFVSHDL-AVVAHLCDRVAVMQNGRIVEELTVADL--------LAGPKH-- 232
|
250
....*....|.
gi 24662800 250 psDYIIELVDA 260
Cdd:COG1124 233 --PYTRELLAA 241
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
40-203 |
2.73e-19 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 86.69 E-value: 2.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG--------FRRDGVTGNiKMKRDNACY-------ITQDDHHQTLLTV 104
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKeelptsgtIRVNGQDVS-DLRGRAIPYlrrkigvVFQDFRLLPDRNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQC 184
Cdd:cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
|
170
....*....|....*....
gi 24662800 185 IRLLQAMAYEGRTIVCTIH 203
Cdd:cd03292 176 MNLLKKINKAGTTVVVATH 194
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
46-228 |
3.54e-19 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 86.39 E-value: 3.54e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 46 SFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV-TGNIKMKRDNACYITQDDHHQTLLTVEELMNLACDLKL 116
Cdd:cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETpqsgrvliNGVdVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 117 KNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-G 195
Cdd:cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAEtK 179
|
170 180 190
....*....|....*....|....*....|...
gi 24662800 196 RTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03298 180 MTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
32-230 |
4.78e-19 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 88.22 E-value: 4.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 32 RVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-----------------------RRDGVTGNikmkrdn 88
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLlrptsgtarvagydvvreprkvrRSIGIVPQ------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 89 acYITQDDHhqtlLTVEELMNLACDL---KLKNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPN 165
Cdd:TIGR01188 74 --YASVDED----LTGRENLEMMGRLyglPKDEAEERAE---ELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 166 IFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHqpsatiY-----NYFDSIYVLAKGQCVYQGSP 230
Cdd:TIGR01188 145 VLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH------YmeeadKLCDRIAIIDHGRIIAEGTP 208
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
35-203 |
4.78e-19 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 85.55 E-value: 4.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGNIKMK-----RDNACYITQDDHHQTL 101
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRpqsgavliDGEPLDYSRKgllerRQRVGLVFQDPDDQLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 L-TVEE-----LMNLACdlklknrhKKAEI---MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:TIGR01166 83 AaDVDQdvafgPLNLGL--------SEAEVerrVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154
|
170 180 190
....*....|....*....|....*....|.
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH 203
Cdd:TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
26-230 |
9.48e-19 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 85.50 E-value: 9.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 26 ERKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSS-------LLNAISG----FRRDGVTGNIKMKRdNACYITQ 94
Cdd:cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTtikmlttLLKPTSGratvAGHDVVREPREVRR-RIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDHHQTLLTVEElmNLACDLKLKN--RHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:cd03265 81 DLSVDDELTGWE--NLYIHARLYGvpGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 173 TSGLDEVTAAQCIRLLQAM-AYEGRTIVCTIHqpsatiynYF-------DSIYVLAKGQCVYQGSP 230
Cdd:cd03265 159 TIGLDPQTRAHVWEYIEKLkEEFGMTILLTTH--------YMeeaeqlcDRVAIIDHGRIIAEGTP 216
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
28-230 |
1.06e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 84.50 E-value: 1.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT-GNIKMKRDNacyITQddhhqtlLTVEE 106
Cdd:cd03217 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTeGEILFKGED---ITD-------LPPEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 107 LMNLACDLKLKNrhkKAEI----MTDILenlhlnhrRNVTaEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDeVTAA 182
Cdd:cd03217 74 RARLGIFLAFQY---PPEIpgvkNADFL--------RYVN-EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDAL 140
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 183 QCI-RLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:cd03217 141 RLVaEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
26-228 |
1.16e-18 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 84.64 E-value: 1.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 26 ERKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDgvTGNIKMkrDNACYITQDDHHQTLL-- 102
Cdd:cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGiILPD--SGEVLF--DGKPLDIAARNRIGYLpe 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 --------TVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTS 174
Cdd:cd03269 78 erglypkmKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24662800 175 GLDEVTAAQCIRLLQAMAYEGRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
35-223 |
1.25e-18 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 83.80 E-value: 1.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV---TGNIKMKRDNACYITQDDhhqTLLT 103
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRptsgrvrlDGAdisQWDPNELGDHVGYLPQDD---ELFS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 veelmnlacdlklknrhkkaeimTDILENLhlnhrrnvtaekLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQ 183
Cdd:cd03246 90 -----------------------GSIAENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24662800 184 CIRLLQAMAYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQ 223
Cdd:cd03246 135 LNQAIAALKAAGATRIVIAHRPETL--ASADRILVLEDGR 172
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
35-219 |
1.47e-18 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 89.27 E-value: 1.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVT---GNIKMKRDNACYITQddhHQTLL- 102
Cdd:TIGR02857 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDptegsiavNGVPladADADSWRDQIAWVPQ---HPFLFa 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 -TVEELMNLAC----DLKLKNRHKKAEIMtDILENLHLNHRRNV--TAEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:TIGR02857 410 gTIAENIRLARpdasDAEIREALERAGLD-EFVAALPQGLDTPIgeGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAH 488
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24662800 176 LDEVTAAQCIRLLQAMAyEGRTIVCTIHQPsATIYNYfDSIYVL 219
Cdd:TIGR02857 489 LDAETEAEVLEALRALA-QGRTVLLVTHRL-ALAALA-DRIVVL 529
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
35-234 |
1.70e-18 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 85.59 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMK-RDNACYITQD--------DHHQTL---L 102
Cdd:PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD-SGEVRLNgRPLADWSPAElarrravlPQHSSLsfpF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEEL--MNLAcDLKLKNRHKKAEIM-----TDIlenLHLNHRRNVTaekLSGGERKRLSIALELV------DNPNIFFL 169
Cdd:PRK13548 92 TVEEVvaMGRA-PHGLSRAEDDALVAaalaqVDL---AHLAGRDYPQ---LSGGEQQRVQLARVLAqlwepdGPPRWLLL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 170 DEPTSGLDevTAAQ--CIRLLQAMAYE-GRTIVCTIH---QPSAtiynYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:PRK13548 165 DEPTSALD--LAHQhhVLRLARQLAHErGLAVIVVLHdlnLAAR----YADRIVLLHQGRLVADGTPAEVL 229
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
15-231 |
1.83e-18 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 84.90 E-value: 1.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKnfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV---TGNIK 83
Cdd:cd03249 1 IEFKNVSFRYPSRP-------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDptsgeillDGVdirDLNLR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MKRDNACYITQD---------------DHHQTLLTVEElmnlACdlklknrhKKAEImTDILENLHLNHRRNVTAE--KL 146
Cdd:cd03249 74 WLRSQIGLVSQEpvlfdgtiaenirygKPDATDEEVEE----AA--------KKANI-HDFIMSLPDGYDTLVGERgsQL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 147 SGGERKRLSIALELVDNPNIFFLDEPTSGLD-----EVTAAqcirLLQAMayEGRTIVCTIHQPSaTIYNYfDSIYVLAK 221
Cdd:cd03249 141 SGGQKQRIAIARALLRNPKILLLDEATSALDaesekLVQEA----LDRAM--KGRTTIVIAHRLS-TIRNA-DLIAVLQN 212
|
250
....*....|
gi 24662800 222 GQCVYQGSPR 231
Cdd:cd03249 213 GQVVEQGTHD 222
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
39-262 |
4.41e-18 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 88.75 E-value: 4.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRD---GVTGNIK---------MKRDNACYITQDDHHQTLLTVEE 106
Cdd:PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG-KLDpslKVSGEITyngyrlnefVPRKTSAYISQNDVHVGVMTVKE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 107 LMNLA--C-------DL--KLKNRHKKAEI----------------------MTD-ILENLHLNHRRN--VTAEKL---S 147
Cdd:PLN03140 259 TLDFSarCqgvgtryDLlsELARREKDAGIfpeaevdlfmkatamegvksslITDyTLKILGLDICKDtiVGDEMIrgiS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 148 GGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMA-YEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVY 226
Cdd:PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVhLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418
|
250 260 270
....*....|....*....|....*....|....*..
gi 24662800 227 QGsPRATI-PFLRLAQLDCPRHYSPSDYIIELVDAED 262
Cdd:PLN03140 419 QG-PRDHIlEFFESCGFKCPERKGTADFLQEVTSKKD 454
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
29-203 |
7.07e-18 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 83.00 E-value: 7.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 29 NFWRvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG----VTGNIKMKRDNacyITQDDHHQTLL-- 102
Cdd:cd03260 7 NVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIpgapDEGEVLLDGKD---IYDLDVDVLELrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 --------------TVEElmNLACDLKL---KNRHKKAEIMTDILENLHL--NHRRNVTAEKLSGGERKRLSIALELVDN 163
Cdd:cd03260 82 rvgmvfqkpnpfpgSIYD--NVAYGLRLhgiKLKEELDERVEEALRKAALwdEVKDRLHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24662800 164 PNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEgRTIVCTIH 203
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTH 198
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
35-230 |
8.37e-18 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 83.08 E-value: 8.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT-GNIKMKRDNACYITQDDHHQTLL----------- 102
Cdd:TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTsGTILFKGQDLLELEPDERARAGLflafqypeeip 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 --TVEELMNLACDLKLKNRHKKA-------EIMTDILENLHLNH---RRNVTaEKLSGGERKRLSIALELVDNPNIFFLD 170
Cdd:TIGR01978 91 gvSNLEFLRSALNARRSARGEEPldlldfeKLLKEKLALLDMDEeflNRSVN-EGFSGGEKKRNEILQMALLEPKLAILD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24662800 171 EPTSGLDeVTAAQCI-RLLQAMAYEGRTIVCTIHQPSatIYNYF--DSIYVLAKGQCVYQGSP 230
Cdd:TIGR01978 170 EIDSGLD-IDALKIVaEGINRLREPDRSFLIITHYQR--LLNYIkpDYVHVLLDGRIVKSGDV 229
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
15-229 |
1.26e-17 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 82.28 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgerrILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIKMKRDNACYITQ 94
Cdd:cd03251 1 VEFKNVTFRYPGDGPP--------VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRILIDGHDVRDYTL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DD--------HHQTLL---TVEElmNLACD------------LKLKNRHkkaEIMTDILENLHLN-HRRNVtaeKLSGGE 150
Cdd:cd03251 72 ASlrrqiglvSQDVFLfndTVAE--NIAYGrpgatreeveeaARAANAH---EFIMELPEGYDTViGERGV---KLSGGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 151 RKRLSIALELVDNPNIFFLDEPTSGLDEVTAaqciRLLQAM---AYEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCVYQ 227
Cdd:cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESE----RLVQAAlerLMKNRTTFVIAHRLS-TIENA-DRIVVLEDGKIVER 217
|
..
gi 24662800 228 GS 229
Cdd:cd03251 218 GT 219
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
28-206 |
1.62e-17 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 82.10 E-value: 1.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG--------------------------FRRDGVtGn 81
Cdd:COG4181 16 KTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGldrptsgtvrlagqdlfaldedararLRARHV-G- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 82 ikmkrdnacYITQDDHhqtL---LTVEElmNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIAL 158
Cdd:COG4181 94 ---------FVFQSFQ---LlptLTALE--NVMLPLELAGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQRVALAR 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 159 ELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPS 206
Cdd:COG4181 160 AFATEPAILFADEPTGNLDAATGEQIIDLLFELNRErGTTLVLVTHDPA 208
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
29-230 |
2.29e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 82.75 E-value: 2.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 29 NFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-------------DGVTGNIKMKRDNACYITQD 95
Cdd:PRK13638 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRpqkgavlwqgkplDYSKRGLLALRQQVATVFQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 DHHQTLLTveelmNLACDLKLKNRH---KKAEIMTDILENLHL---NHRRNVTAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:PRK13638 86 PEQQIFYT-----DIDSDIAFSLRNlgvPEAEITRRVDEALTLvdaQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAP 220
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
14-228 |
3.17e-17 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 81.10 E-value: 3.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 14 NVEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNIKM- 84
Cdd:cd03245 2 RIEFRNVSFSYPNQ--------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKptsgsvllDGT--DIRQl 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 ----KRDNACYITQDDH------------HQTLLTVEELM---NLACDLKLKNRHKKAEIMtDILENlhlnhrrnvtAEK 145
Cdd:cd03245 72 dpadLRRNIGYVPQDVTlfygtlrdnitlGAPLADDERILraaELAGVTDFVNKHPNGLDL-QIGER----------GRG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 146 LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSatIYNYFDSIYVLAKGQCV 225
Cdd:cd03245 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
|
...
gi 24662800 226 YQG 228
Cdd:cd03245 218 ADG 220
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
35-205 |
3.30e-17 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 80.23 E-value: 3.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKM-------KRD----NACYITQDDHHQTLLT 103
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLnggpldfQRDsiarGLLYLGHAPGIKTTLS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEELMNLACDLklknrHKKAEIMtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQ 183
Cdd:cd03231 90 VLENLRFWHAD-----HSDEQVE-EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
170 180
....*....|....*....|..
gi 24662800 184 CIRLLQAMAYEGRTIVCTIHQP 205
Cdd:cd03231 164 FAEAMAGHCARGGMVVLTTHQD 185
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
15-177 |
4.93e-17 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 82.81 E-value: 4.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDG--VTG---- 80
Cdd:COG3839 4 LELENV------SKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLedptsgeiLIGGrdVTDlppk 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 81 --NIKMkrdnacyITQD----DHhqtlLTVEElmNLACDLKLKnRHKKAEI---MTDILENLHLNHRRNVTAEKLSGGER 151
Cdd:COG3839 74 drNIAM-------VFQSyalyPH----MTVYE--NIAFPLKLR-KVPKAEIdrrVREAAELLGLEDLLDRKPKQLSGGQR 139
|
170 180
....*....|....*....|....*.
gi 24662800 152 KRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:COG3839 140 QRVALGRALVREPKVFLLDEPLSNLD 165
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
35-254 |
5.26e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 81.11 E-value: 5.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNA----ISGFRRDGVTGNI--------KMK----RDNACYITQDDHH 98
Cdd:PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrlIELYPEARVSGEVyldgqdifKMDvielRRRVQMVFQIPNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 QTLLTVEElmNLACDLKL----KNRHKKAEIMTDILENLHL----NHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLD 170
Cdd:PRK14247 94 IPNLSIFE--NVALGLKLnrlvKSKKELQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 171 EPTSGLDEVTAAQCIRLLQAMAYEgRTIVCTIHQP--SATIYNYFDSIYvlaKGQCVYQGSPRATipFLRlaqldcPRHY 248
Cdd:PRK14247 172 EPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPqqAARISDYVAFLY---KGQIVEWGPTREV--FTN------PRHE 239
|
....*.
gi 24662800 249 SPSDYI 254
Cdd:PRK14247 240 LTEKYV 245
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
35-232 |
5.48e-17 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 80.41 E-value: 5.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIKMK-RDnacyITQDDHHQ-------------- 99
Cdd:COG0410 14 GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLP-PRSGSIRFDgED----ITGLPPHRiarlgigyvpegrr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 --TLLTVEELMNLACdLKLKNRHKKAEIMTDILE---NLHlnHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTS 174
Cdd:COG0410 89 ifPSLTVEENLLLGA-YARRDRAEVRADLERVYElfpRLK--ERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 175 GLDEVTAAQCIRLLQAMAYEGRTI------------VCtihqpsatiynyfDSIYVLAKGQCVYQGSPRA 232
Cdd:COG0410 166 GLAPLIVEEIFEIIRRLNREGVTIllveqnarfaleIA-------------DRAYVLERGRIVLEGTAAE 222
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
35-205 |
7.95e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 79.53 E-value: 7.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIKMKRDNAC---------YITQDDHHQTLLTVE 105
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDdpdvaeachYLGHRNAMKPALTVA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 106 ElmNLACDLKLKNRHKKAeiMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI 185
Cdd:PRK13539 92 E--NLEFWAAFLGGEELD--IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
|
170 180
....*....|....*....|
gi 24662800 186 RLLQAMAYEGRTIVCTIHQP 205
Cdd:PRK13539 168 ELIRAHLAQGGIVIAATHIP 187
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
35-204 |
8.16e-17 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 79.50 E-value: 8.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGNIKMK-----RDNACYITQddhHQTL 101
Cdd:cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEpdsgtiiiDGLKLTDDKKninelRQKVGMVFQ---QFNL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 ---LTVEELMNLAcDLKLKNRHKKA--EIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGL 176
Cdd:cd03262 88 fphLTVLENITLA-PIKVKGMSKAEaeERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166
|
170 180
....*....|....*....|....*...
gi 24662800 177 DEVTAAQCIRLLQAMAYEGRTIVCTIHQ 204
Cdd:cd03262 167 DPELVGEVLDVMKDLAEEGMTMVVVTHE 194
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
35-204 |
8.90e-17 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 80.40 E-value: 8.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG-----VTG-NIKMKRDNACYITQDDHHQ-----TLLT 103
Cdd:PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSegsivVNGqTINLVRDKDGQLKVADKNQlrllrTRLT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 --------------VEELMNLACDLKLKNRHKKAEIMTDILENLHLNHR-RNVTAEKLSGGERKRLSIALELVDNPNIFF 168
Cdd:PRK10619 96 mvfqhfnlwshmtvLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 24662800 169 LDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQ 204
Cdd:PRK10619 176 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
34-245 |
8.97e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 81.00 E-value: 8.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 34 TGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF----------RRDGVT-GNIKMKRDNACYITQDDHHQTL- 101
Cdd:PRK13652 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIlkptsgsvliRGEPITkENIREVRKFVGLVFQNPDDQIFs 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEELMNLA-CDLKLkNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVT 180
Cdd:PRK13652 94 PTVEQDIAFGpINLGL-DEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 181 AAQCIRLLQAMAYE-GRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSPRATI---PFLRLAQLDCP 245
Cdd:PRK13652 173 VKELIDFLNDLPETyGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIFlqpDLLARVHLDLP 240
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
46-230 |
1.01e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 84.68 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 46 SFRNGQLSAIMGPSGAGKSSLLNAISGFR-----------RDgVTGNIKMKRDNACYITQDD---HHqtlLTVEELMNLA 111
Cdd:TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLpptsgtvlvggKD-IETNLDAVRQSLGMCPQHNilfHH---LTVAEHILFY 1027
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 112 CDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLqaM 191
Cdd:TIGR01257 1028 AQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--L 1105
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 24662800 192 AYE-GRTIV-CTIHQPSATIYNyfDSIYVLAKGQCVYQGSP 230
Cdd:TIGR01257 1106 KYRsGRTIImSTHHMDEADLLG--DRIAIISQGRLYCSGTP 1144
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
46-232 |
1.33e-16 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 79.41 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 46 SFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNacyIT-------------QDD---HHqtlLTVEElmN 109
Cdd:COG3840 21 TIAAGERVAILGPSGAGKSTLLNLIAGFLPPD-SGRILWNGQD---LTalppaerpvsmlfQENnlfPH---LTVAQ--N 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 110 LAC----DLKLkNRHKKAEIMtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI 185
Cdd:COG3840 92 IGLglrpGLKL-TAEQRAQVE-QALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEML 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24662800 186 RLLQAMAYE-GRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:COG3840 170 DLVDELCRErGLTVLMVTHDPEDAA-RIADRVLLVADGRIAADGPTAA 216
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
26-229 |
2.35e-16 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 79.30 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 26 ERKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT-GNIKMKRDNACYITQDDHHQ----- 99
Cdd:CHL00131 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILeGDILFKGESILDLEPEERAHlgifl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 --------TLLTVEELMNLACDLKLKNRHKKA-------EIMTDILENLHLNHR---RNVTaEKLSGGERKRLSIALELV 161
Cdd:CHL00131 89 afqypieiPGVSNADFLRLAYNSKRKFQGLPEldpleflEIINEKLKLVGMDPSflsRNVN-EGFSGGEKKRNEILQMAL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 162 DNPNIFFLDEPTSGLDeVTAAQCI-RLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGS 229
Cdd:CHL00131 168 LDSELAILDETDSGLD-IDALKIIaEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
35-205 |
3.13e-16 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 77.40 E-value: 3.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMK-----------RDNACYITQDDHHQTLLT 103
Cdd:TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNgtplaeqrdepHENILYLGHLPGLKPELS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEELMNLACDLklknrHKKAEIMT-DILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAA 182
Cdd:TIGR01189 90 ALENLHFWAAI-----HGGAQRTIeDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVA 164
|
170 180
....*....|....*....|...
gi 24662800 183 QCIRLLQAMAYEGRTIVCTIHQP 205
Cdd:TIGR01189 165 LLAGLLRAHLARGGIVLLTTHQD 187
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
15-234 |
3.19e-16 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 78.59 E-value: 3.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkerkNFWRvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIS--------------GFRRDGVT- 79
Cdd:COG1119 4 LELRNV--------TVRR--GGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITgdlpptygndvrlfGERRGGEDv 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 -------GnikmkrdnacYITQDDHHQ---------TLLT-----------VEELMnlacdlklknrHKKAEimtDILEN 132
Cdd:COG1119 74 welrkriG----------LVSPALQLRfprdetvldVVLSgffdsiglyrePTDEQ-----------RERAR---ELLEL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 133 LHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEG-RTIVCTIHQPSAtIYN 211
Cdd:COG1119 130 LGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEE-IPP 208
|
250 260
....*....|....*....|...
gi 24662800 212 YFDSIYVLAKGQCVYQGSPRATI 234
Cdd:COG1119 209 GITHVLLLKDGRVVAAGPKEEVL 231
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
35-240 |
5.60e-16 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 80.27 E-value: 5.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNACYITQDDHHQTLLTVEELMNLACDL 114
Cdd:PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 115 KLKNrhkkaeimtdILENLHLNHR----------------------------RNVTAekLSGGERKRLSIALELVDNPNI 166
Cdd:PRK09536 93 DVRQ----------VVEMGRTPHRsrfdtwtetdraaveramertgvaqfadRPVTS--LSGGERQRVLLARALAQATPV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 167 FFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPRA--TIPFLRLA 240
Cdd:PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA-RYCDELVLLADGRVRAAGPPADvlTADTLRAA 235
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
9-234 |
8.96e-16 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 79.10 E-value: 8.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 9 AKQSKNVEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG----------V 78
Cdd:PRK13536 36 SMSTVAIDLAGV------SKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDagkitvlgvpV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 79 TGNIKMKRDNACYITQDDHHQTLLTVEE-LMNLACDLKLKNRHKKAeIMTDILENLHLNHRRNVTAEKLSGGERKRLSIA 157
Cdd:PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVREnLLVFGRYFGMSTREIEA-VIPSLLEFARLESKADARVSDLSGGMKRRLTLA 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 158 LELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH-QPSATiyNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHfMEEAE--RLCDRLCVLEAGRKIAEGRPHALI 260
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
15-232 |
1.10e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 77.90 E-value: 1.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMKRDNACYITQ 94
Cdd:PRK13646 3 IRFDNVSYTYQKGTPY-----EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-TTGTVTVDDITITHKTK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDHHQTLL-----------------TVEELM-----NLACDL-KLKNRhkkaeiMTDILenLHLNHRRNVTAE---KLSG 148
Cdd:PRK13646 77 DKYIRPVRkrigmvfqfpesqlfedTVEREIifgpkNFKMNLdEVKNY------AHRLL--MDLGFSRDVMSQspfQMSG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 149 GERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQ 227
Cdd:PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDeNKTIILVSHDMN-EVARYADEVIVMKEGSIVSQ 227
|
....*
gi 24662800 228 GSPRA 232
Cdd:PRK13646 228 TSPKE 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
28-223 |
1.40e-15 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 76.14 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTG------NIKMKRDN-AC 90
Cdd:cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEptsgriyiGGrdVTDlppkdrDIAMVFQNyAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 91 YitqdDHhqtlLTVEElmNLACDLKLKNRhKKAEI---MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIF 167
Cdd:cd03301 84 Y----PH----MTVYD--NIAFGLKLRKV-PKDEIderVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 168 FLDEPTSGLD----EVTAAQCIRLLQAMayeGRTIVCTIH-QPSATiyNYFDSIYVLAKGQ 223
Cdd:cd03301 153 LMDEPLSNLDaklrVQMRAELKRLQQRL---GTTTIYVTHdQVEAM--TMADRIAVMNDGQ 208
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
15-246 |
2.20e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 76.71 E-value: 2.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF---------------RRDGVT 79
Cdd:PRK13649 3 INLQNVSYTYQAGTPF-----EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLhvptqgsvrvddtliTSTSKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 GNIKMKRDNACYITQDDHHQ----TLL------------TVEELMNLAcdlklknRHKKAeiMTDILENLhlnhrRNVTA 143
Cdd:PRK13649 78 KDIKQIRKKVGLVFQFPESQlfeeTVLkdvafgpqnfgvSQEEAEALA-------REKLA--LVGISESL-----FEKNP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 144 EKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQ 223
Cdd:PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGK 222
|
250 260
....*....|....*....|....*.
gi 24662800 224 CVYQGSPRAT---IPFLRLAQLDCPR 246
Cdd:PRK13649 223 LVLSGKPKDIfqdVDFLEEKQLGVPK 248
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
35-231 |
2.27e-15 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 75.74 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFrrDGVT-GNIKMKRDNacyITQDDHHQ----TL-------- 101
Cdd:cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--ETPTsGEILLDGKD---ITNLPPHKrpvnTVfqnyalfp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 -LTVEElmNLACDLKLKnRHKKAEIMTDILENLHL----NHRRNVTAEkLSGGERKRLSIALELVDNPNIFFLDEPTSGL 176
Cdd:cd03300 86 hLTVFE--NIAFGLRLK-KLPKAEIKERVAEALDLvqleGYANRKPSQ-LSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662800 177 DevtaaqcIRLLQAMAYE--------GRTIVCTIH-QPSATIYNyfDSIYVLAKGQCVYQGSPR 231
Cdd:cd03300 162 D-------LKLRKDMQLElkrlqkelGITFVFVTHdQEEALTMS--DRIAVMNKGKIQQIGTPE 216
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
34-183 |
2.30e-15 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 75.21 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 34 TGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT--GNIKMkRDNAC-----------YITQDDH--- 97
Cdd:COG4136 11 LGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFSasGEVLL-NGRRLtalpaeqrrigILFQDDLlfp 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HqtlLTVEElmNLACDL--KLKNRHKKAEIMtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:COG4136 90 H---LSVGE--NLAFALppTIGRAQRRARVE-QALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSK 163
|
....*...
gi 24662800 176 LDEVTAAQ 183
Cdd:COG4136 164 LDAALRAQ 171
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
8-230 |
3.26e-15 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 78.67 E-value: 3.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 8 LAKQSKNVEFQDVYYTVKerknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVt 79
Cdd:COG1132 333 LPPVRGEIEFENVSFSYP---------GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDptsgriliDGV- 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 gNIK-MK----RDNACYITQDDH--HQTLL----------TVEELMNLAcdlklknrhKKAEIMtDILENL------HLN 136
Cdd:COG1132 403 -DIRdLTleslRRQIGVVPQDTFlfSGTIRenirygrpdaTDEEVEEAA---------KAAQAH-EFIEALpdgydtVVG 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 137 HRrnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAqciRLLQAMA--YEGRTIVcTI-HQPSaTIYNyF 213
Cdd:COG1132 472 ER----GVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEA---LIQEALErlMKGRTTI-VIaHRLS-TIRN-A 541
|
250
....*....|....*..
gi 24662800 214 DSIYVLAKGQCVYQGSP 230
Cdd:COG1132 542 DRILVLDDGRIVEQGTH 558
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
28-228 |
3.35e-15 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 75.10 E-value: 3.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-----------DGVTGNIKMKRdNACYITQDD 96
Cdd:cd03266 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEpdagfatvdgfDVVKEPAEARR-RLGFVSDST 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 HHQTLLTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGL 176
Cdd:cd03266 88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24662800 177 DeVTAAQCIR-LLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03266 168 D-VMATRALReFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-231 |
4.05e-15 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 77.29 E-value: 4.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 4 SQNLLAKQSKN---VEFQDVYytvkerKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTG 80
Cdd:PRK09452 1 SKKLNKQPSSLsplVELRGIS------KSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 81 NIKMkrdNACYITQ----DDHHQTL---------LTVEElmNLACDLKLKNRhKKAEIMTDILENL---HLNHRRNVTAE 144
Cdd:PRK09452 70 RIML---DGQDITHvpaeNRHVNTVfqsyalfphMTVFE--NVAFGLRMQKT-PAAEITPRVMEALrmvQLEEFAQRKPH 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 145 KLSGGERKRLSIALELVDNPNIFFLDEPTSGLDevtaaqcIRLLQAMAYE--------GRTIVCTIH-QPSATIYNyfDS 215
Cdd:PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALD-------YKLRKQMQNElkalqrklGITFVFVTHdQEEALTMS--DR 214
|
250
....*....|....*.
gi 24662800 216 IYVLAKGQCVYQGSPR 231
Cdd:PRK09452 215 IVVMRDGRIEQDGTPR 230
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
15-245 |
6.47e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 75.61 E-value: 6.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKnfwrvtgeRRILNGVSGSFRNGQLSAIMGPSGAGKSS---LLNAI--------SGFRRDGVTGNIK 83
Cdd:PRK13640 6 VEFKHVSFTYPDSK--------KPALNDISFSIPRGSWTALIGHNGSGKSTiskLINGLllpddnpnSKITVDGITLTAK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MK---RDNACYITQDDHHQTL-LTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALE 159
Cdd:PRK13640 78 TVwdiREKVGIVFQNPDNQFVgATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 160 LVDNPNIFFLDEPTSGLDEVTAAQCIRLL-QAMAYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQCVYQGSPRATIP--- 235
Cdd:PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIrKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPVEIFSkve 235
|
250
....*....|
gi 24662800 236 FLRLAQLDCP 245
Cdd:PRK13640 236 MLKEIGLDIP 245
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
15-204 |
7.88e-15 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 74.36 E-value: 7.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIS-------------GFRRDGVTGN 81
Cdd:PRK09493 2 IEFKNV------SKHF----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINkleeitsgdlivdGLKVNDPKVD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 82 IKMKRDNACYITQDDH---HQTLLtvEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIAL 158
Cdd:PRK09493 72 ERLIRQEAGMVFQQFYlfpHLTAL--ENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIAR 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24662800 159 ELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQ 204
Cdd:PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
27-231 |
1.16e-14 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 73.91 E-value: 1.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 27 RKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNI----------KMKRDNACYITQdd 96
Cdd:cd03296 9 SKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTIlfggedatdvPVQERNVGFVFQ-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 hHQTL---LTVEElmNLACDLKLK---NRHKKAEI---MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIF 167
Cdd:cd03296 82 -HYALfrhMTVFD--NVAFGLRVKprsERPPEAEIrakVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIH-QPSAtiYNYFDSIYVLAKGQCVYQGSPR 231
Cdd:cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHdQEEA--LEVADRVVVMNKGRIEQVGTPD 222
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
15-231 |
1.45e-14 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 73.49 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNIKMKR 86
Cdd:COG1126 2 IEIENL------HKSF----GDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEpdsgtitvDGE--DLTDSK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DNACYITQD-----------DHhqtlLTVEElmNLACDL-KLKNRHKKA--EIMTDILENLHLNHRRNVTAEKLSGGERK 152
Cdd:COG1126 70 KDINKLRRKvgmvfqqfnlfPH----LTVLE--NVTLAPiKVKKMSKAEaeERAMELLERVGLADKADAYPAQLSGGQQQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 153 RLSIALELVDNPNIFFLDEPTSGLD-----EVtaaqcirlLQAM---AYEGRTIVCTIHQPSatiynyF-----DSIYVL 219
Cdd:COG1126 144 RVAIARALAMEPKVMLFDEPTSALDpelvgEV--------LDVMrdlAKEGMTMVVVTHEMG------FarevaDRVVFM 209
|
250
....*....|..
gi 24662800 220 AKGQCVYQGSPR 231
Cdd:COG1126 210 DGGRIVEEGPPE 221
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
39-189 |
1.56e-14 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 73.31 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFrrDGVTG-----------------NIKMKRDNACYITQddHHQTL 101
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--DTPTSgdvifngqpmsklssaaKAELRNQKLGFIYQ--FHHLL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEELMNLACDLkLKNRHKKAEIMTDILENLH---LNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:PRK11629 100 PDFTALENVAMPL-LIGKKKPAEINSRALEMLAavgLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
170
....*....|.
gi 24662800 179 VTAAQCIRLLQ 189
Cdd:PRK11629 179 RNADSIFQLLG 189
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
15-177 |
1.76e-14 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 75.13 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTG---- 80
Cdd:COG3842 6 LELENV------SKRY----GDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETpdsgrillDGrdVTGlppe 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 81 --NIKMkrdnacyITQDD----HhqtlLTVEElmNLACDLKLKnRHKKAEI---MTDILENLHLNHRRNVTAEKLSGGER 151
Cdd:COG3842 76 krNVGM-------VFQDYalfpH----LTVAE--NVAFGLRMR-GVPKAEIrarVAELLELVGLEGLADRYPHQLSGGQQ 141
|
170 180
....*....|....*....|....*.
gi 24662800 152 KRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:COG3842 142 QRVALARALAPEPRVLLLDEPLSALD 167
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
15-273 |
1.92e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 74.38 E-value: 1.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFR-------RDG---VTGNIKM 84
Cdd:PRK13643 2 IKFEKVNYTYQPNSPF-----ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLqptegkvTVGdivVSSTSKQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 K-----RDNACYITQDDHHQTLltvEELMNLACDLKLKN----RHKKAEIMTDILENLHLNHR-RNVTAEKLSGGERKRL 154
Cdd:PRK13643 77 KeikpvRKKVGVVFQFPESQLF---EETVLKDVAFGPQNfgipKEKAEKIAAEKLEMVGLADEfWEKSPFELSGGQMRRV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 155 SIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSPR--- 231
Cdd:PRK13643 154 AIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSdvf 232
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 24662800 232 ATIPFLRLAQLDCPRHYSPSD-------YIIELVDAEDGHLVPALSDLT 273
Cdd:PRK13643 233 QEVDFLKAHELGVPKATHFADqlqktgaVTFEKLPITRAELVTLLTSLS 281
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
15-254 |
2.15e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 73.87 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgerrILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVT---GNIK 83
Cdd:PRK13632 8 IKVENVSFSYPNSENN--------ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKpqsgeikiDGITiskENLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MKRDNACYITQDDHHQTL-LTVEElmNLAcdLKLKNRHKKAEIMTDILENL--------HLNHRrnvtAEKLSGGERKRL 154
Cdd:PRK13632 80 EIRKKIGIIFQNPDNQFIgATVED--DIA--FGLENKKVPPKKMKDIIDDLakkvgmedYLDKE----PQNLSGGQKQRV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 155 SIALELVDNPNIFFLDEPTSGLD---EVTAAQCIRLLQAMAyeGRTIVCTIHQPSATIYNyfDSIYVLAKGQCVYQGSPR 231
Cdd:PRK13632 152 AIASVLALNPEIIIFDESTSMLDpkgKREIKKIMVDLRKTR--KKTLISITHDMDEAILA--DKVIVFSEGKLIAQGKPK 227
|
250 260
....*....|....*....|....*.
gi 24662800 232 ATI---PFLRLAQLDCPRHYSPSDYI 254
Cdd:PRK13632 228 EILnnkEILEKAKIDSPFIYKLSKKL 253
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
35-205 |
2.45e-14 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 75.86 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFrRDGVTGNikmkrdnacyITQDDHHQTLLTVEELMNLACDL 114
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL-LDPLQGE----------VTLDGVPVSSLDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 115 KlknrhKKAEIM-TDILENLHLNhRRNVTAEK-------------------------------LSGGERKRLSIALELVD 162
Cdd:TIGR02868 415 A-----QDAHLFdTTVRENLRLA-RPDATDEElwaalervgladwlralpdgldtvlgeggarLSGGERQRLALARALLA 488
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24662800 163 NPNIFFLDEPTSGLDEVTAAQCIRLLQAmAYEGRTIVCTIHQP 205
Cdd:TIGR02868 489 DAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
35-177 |
2.87e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 72.84 E-value: 2.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKmkRDNAC---YITQDDH-HQTL-LTVEELMn 109
Cdd:PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIK--RNGKLrigYVPQKLYlDTTLpLTVNRFL- 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 110 lacdlKLKNRHKKAEIMTdILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK09544 91 -----RLRPGTKKEDILP-ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
15-234 |
3.37e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 73.69 E-value: 3.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR----------DGVTGNIKM 84
Cdd:PRK13537 8 IDFRNV------EKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHpdagsislcgEPVPSRARH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 KRDNACYITQDDHHQTLLTVEElmnlacDLKLKNR------HKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIAL 158
Cdd:PRK13537 78 ARQRVGVVPQFDNLDPDFTVRE------NLLVFGRyfglsaAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLAR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 159 ELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH--QPSATIYNYfdsIYVLAKGQCVYQGSPRATI 234
Cdd:PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHfmEEAERLCDR---LCVIEEGRKIAEGAPHALI 226
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
28-203 |
3.48e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 73.15 E-value: 3.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISgfRRDGVTGNIKMKrDNACYITQDDHHQ-------- 99
Cdd:PRK14258 11 NNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN--RMNELESEVRVE-GRVEFFNQNIYERrvnlnrlr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 ----------TLLTVEELMNLACDLKLKNRHKKAEImTDILENL--------HLNHRRNVTAEKLSGGERKRLSIALELV 161
Cdd:PRK14258 88 rqvsmvhpkpNLFPMSVYDNVAYGVKIVGWRPKLEI-DDIVESAlkdadlwdEIKHKIHKSALDLSGGQQQRLCIARALA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24662800 162 DNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGR-TIVCTIH 203
Cdd:PRK14258 167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSH 209
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
36-187 |
4.53e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 72.43 E-value: 4.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDgvTGNI--------KM---KRdnACYI---TQDDHHQT 100
Cdd:COG1101 18 EKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGsLPPD--SGSIlidgkdvtKLpeyKR--AKYIgrvFQDPMMGT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 L--LTVEELMNLAcDLKLKNR-------HKKAEIMTDILENLHLN--HRRNVTAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:COG1101 94 ApsMTIEENLALA-YRRGKRRglrrgltKKRRELFRELLATLGLGleNRLDTKVGLLSGGQRQALSLLMATLTKPKLLLL 172
|
170
....*....|....*...
gi 24662800 170 DEPTSGLDEVTAAQCIRL 187
Cdd:COG1101 173 DEHTAALDPKTAALVLEL 190
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
36-232 |
5.22e-14 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 72.35 E-value: 5.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF------------------RRDG-VTGNIKMKRDNACYITQDD 96
Cdd:PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgdksagshiellgrtvQREGrLARDIRKSRANTGYIFQQF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 HHQTLLTVEE---LMNLACD------LKLKNRHKKAEIMTDI--LENLHLNHRRNVTaekLSGGERKRLSIALELVDNPN 165
Cdd:PRK09984 96 NLVNRLSVLEnvlIGALGSTpfwrtcFSWFTREQKQRALQALtrVGMVHFAHQRVST---LSGGQQQRVAIARALMQQAK 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 166 IFFLDEPTSGLDEVTAAQCIRLLQAM-AYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:PRK09984 173 VILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGSSQQ 239
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
15-229 |
7.71e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 74.61 E-value: 7.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYtvkerknfwRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SGFRR-DGV---TGNIK 83
Cdd:PRK13657 335 VEFDDVSF---------SYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLqrvfdpqSGRILiDGTdirTVTRA 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MKRDNACYITQDdhhqTLL---TVEElmNL------ACDLKLKNRHKKAEIMTDILENLH-LNHRRNVTAEKLSGGERKR 153
Cdd:PRK13657 406 SLRRNIAVVFQD----AGLfnrSIED--NIrvgrpdATDEEMRAAAERAQAHDFIERKPDgYDTVVGERGRQLSGGERQR 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCVYQGS 229
Cdd:PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS-TVRNA-DRILVFDNGRVVESGS 552
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
14-228 |
8.00e-14 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 74.76 E-value: 8.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 14 NVEFQDVYYTVKERKNfwrvtgeRRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTgnikmk 85
Cdd:TIGR00958 478 LIEFQDVSFSYPNRPD-------VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQptggqvllDGVP------ 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 86 rdnacyITQDDHH----QTLLTVEE--LM------NLACDLklkNRHKKAEIMT--------DILENLHLNHRRNV--TA 143
Cdd:TIGR00958 545 ------LVQYDHHylhrQVALVGQEpvLFsgsvreNIAYGL---TDTPDEEIMAaakaanahDFIMEFPNGYDTEVgeKG 615
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 144 EKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDevtaAQCIRLLQA-MAYEGRTIVCTIHQPSaTIYNYfDSIYVLAKG 222
Cdd:TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALD----AECEQLLQEsRSRASRTVLLIAHRLS-TVERA-DQILVLKKG 689
|
....*.
gi 24662800 223 QCVYQG 228
Cdd:TIGR00958 690 SVVEMG 695
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
54-293 |
8.49e-14 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 73.22 E-value: 8.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 54 AIMGPSGAGKSSLLNAISGFRR--------DGVTGNIKMK-------RDNACYITQDDHHQTLLTVEElmNLACDLKL-- 116
Cdd:TIGR02142 27 AIFGRSGSGKTTLIRLIAGLTRpdegeivlNGRTLFDSRKgiflppeKRRIGYVFQEARLFPHLSVRG--NLRYGMKRar 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 117 -KNRHKKAEIMTDILENLHLNHRRnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEG 195
Cdd:TIGR02142 105 pSERRISFERVIELLGIGHLLGRL---PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 196 RT-IVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGSPRATipflrLAQLDCPR-HYSPSDYIIEL-VDAEDGHLvpALSDL 272
Cdd:TIGR02142 182 GIpILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEV-----WASPDLPWlAREDQGSLIEGvVAEHDQHY--GLTAL 253
|
250 260
....*....|....*....|.
gi 24662800 273 TENGKLIYVvsqSEQLAPQQA 293
Cdd:TIGR02142 254 RLGGGHLWV---PENLGPTGA 271
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
37-232 |
9.18e-14 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 71.32 E-value: 9.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 37 RRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SGFRRDG------------VTGNIKMKRDNACYITQDDH 97
Cdd:PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCInlleqpeAGTIRVGditidtarslsqQKGLIRQLRQHVGFVFQNFN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 ---HQTLLtvEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTS 174
Cdd:PRK11264 96 lfpHRTVL--ENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 175 GLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATiYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:PRK11264 174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA-RDVADRAIFMDQGRIVEQGPAKA 230
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
37-223 |
1.20e-13 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 73.69 E-value: 1.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 37 RRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMK-------------------RDNACYITQDDH 97
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYG-SGRIARPagarvlflpqrpylplgtlREALLYPATAEA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 H--QTLLTVEELMNLAcdlklknrhkkaeimtdilenlHLNHRRNVTA---EKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:COG4178 455 FsdAELREALEAVGLG----------------------HLAERLDEEAdwdQVLSLGEQQRLAFARLLLHKPDWLFLDEA 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24662800 173 TSGLDEVTAAQCIRLLQAMaYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQ 223
Cdd:COG4178 513 TSALDEENEAALYQLLREE-LPGTTVISVGHRSTLA--AFHDRVLELTGDG 560
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-229 |
1.38e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 73.71 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 4 SQNLLAKQSKNVEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIK 83
Cdd:PRK11160 328 TTSTAAADQVSLTLNNVSFTYPDQ--------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEIL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MK------------RDNACYITQDDHhqtlltveeLMN--LACDLKLKNRHKKAEIMTDILENLHLnhRRNVTAEK---- 145
Cdd:PRK11160 399 LNgqpiadyseaalRQAISVVSQRVH---------LFSatLRDNLLLAAPNASDEALIEVLQQVGL--EKLLEDDKglna 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 146 --------LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQpsATIYNYFDSIY 217
Cdd:PRK11160 468 wlgeggrqLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHR--LTGLEQFDRIC 544
|
250
....*....|..
gi 24662800 218 VLAKGQCVYQGS 229
Cdd:PRK11160 545 VMDNGQIIEQGT 556
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
35-203 |
1.88e-13 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 67.86 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDGVTGNIK-MKRDNACYITQddhhqtlltveelmnlacd 113
Cdd:cd03221 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTwGSTVKIGYFEQ------------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 114 lklknrhkkaeimtdilenlhlnhrrnvtaekLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQamAY 193
Cdd:cd03221 71 --------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK--EY 116
|
170
....*....|
gi 24662800 194 EGrTIVCTIH 203
Cdd:cd03221 117 PG-TVILVSH 125
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
36-229 |
1.98e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 70.46 E-value: 1.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI--------SGFRRDGVT----------GNIKMKRDNACYITQDDH 97
Cdd:PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLnrlieiydSKIKVDGKVlyfgkdifqiDAIKLRKEVGMVFQQPNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTLLTVEelmNLACDLK---LKNRHKKAEIMTDILENLHL----NHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLD 170
Cdd:PRK14246 102 FPHLSIYD---NIAYPLKshgIKEKREIKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 171 EPTSGLDEVTAAQCIRLLQAMAYEgRTIVCTIHQP--SATIYNYFDSIYvlaKGQCVYQGS 229
Cdd:PRK14246 179 EPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPqqVARVADYVAFLY---NGELVEWGS 235
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
35-177 |
3.02e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 71.27 E-value: 3.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNACYITQDD-------HHQTL---LTV 104
Cdd:PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARDrkvgfvfQHYALfrhMTV 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 105 EElmNLACDLKLKNRHKK---AEI---MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK10851 92 FD--NIAFGLTVLPRRERpnaAAIkakVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
15-229 |
3.76e-13 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 69.44 E-value: 3.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKerknfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV---TGNIK 83
Cdd:cd03252 1 ITFEHVRFRYK--------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVpengrvlvDGHdlaLADPA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MKRDNACYITQDDhhqTLLTVEELMNLACDLKLKNRHKKAEIMT-----DILENLHLNHRrNVTAEK---LSGGERKRLS 155
Cdd:cd03252 73 WLRRQVGVVLQEN---VLFNRSIRDNIALADPGMSMERVIEAAKlagahDFISELPEGYD-TIVGEQgagLSGGQRQRIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662800 156 IALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCVYQGS 229
Cdd:cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TVKNA-DRIIVMEKGRIVEQGS 219
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
15-231 |
4.71e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 70.05 E-value: 4.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSL---LNAI----SGFRRDG---VTGNIKM 84
Cdd:PRK13634 3 ITFQKVEHRYQYKTPF-----ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLlqhLNGLlqptSGTVTIGervITAGKKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 K-----RDNACYITQDDHHQTL-LTVEE-----LMNLAcdLKLKNRHKKAEIMtdiLENLHLNHR-RNVTAEKLSGGERK 152
Cdd:PRK13634 78 KklkplRKKVGIVFQFPEHQLFeETVEKdicfgPMNFG--VSEEDAKQKAREM---IELVGLPEElLARSPFELSGGQMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 153 RLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQGSPR 231
Cdd:PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEkGLTTVLVTHS-MEDAARYADQIVVMHKGTVFLQGTPR 231
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
43-229 |
5.30e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 71.80 E-value: 5.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 43 VSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdgVTGNIKMK------------RDNACYITQDDH--HQTLLTveelm 108
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP--YQGSLKINgielreldpeswRKHLSWVGQNPQlpHGTLRD----- 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 109 NL------ACDLKLKNRHKKAEImTDILENLH--LNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVT 180
Cdd:PRK11174 442 NVllgnpdASDEQLQQALENAWV-SEFLPLLPqgLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 181 AAQCIRLLQAmAYEGRTIVCTIHQPSATIynYFDSIYVLAKGQCVYQGS 229
Cdd:PRK11174 521 EQLVMQALNA-ASRRQTTLMVTHQLEDLA--QWDQIWVMQDGQIVQQGD 566
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
35-183 |
9.22e-13 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 68.65 E-value: 9.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISgfrRDG-------VTGNIKMKRDNAcYITQDDHHQtlLTVEEL 107
Cdd:PRK14239 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSIN---RMNdlnpevtITGSIVYNGHNI-YSPRTDTVD--LRKEIG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 M--------------NLACDLKLKNRHKK-------------AEIMTDILENLHLNhrrnvtAEKLSGGERKRLSIALEL 160
Cdd:PRK14239 90 MvfqqpnpfpmsiyeNVVYGLRLKGIKDKqvldeavekslkgASIWDEVKDRLHDS------ALGLSGGQQQRVCIARVL 163
|
170 180
....*....|....*....|...
gi 24662800 161 VDNPNIFFLDEPTSGLDEVTAAQ 183
Cdd:PRK14239 164 ATSPKIILLDEPTSALDPISAGK 186
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
35-180 |
9.41e-13 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 68.74 E-value: 9.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDG--VTGNikmKRDNACyITQDDHHQTLLTV 104
Cdd:COG4525 18 QPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFlapssgeiTLDGvpVTGP---GADRGV-VFQKDALLPWLNV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EElmNLACDLKLK-----NRHKKAEimtdilENLHL-----NHRRNVTAekLSGGERKRLSIALELVDNPNIFFLDEPTS 174
Cdd:COG4525 94 LD--NVAFGLRLRgvpkaERRARAE------ELLALvgladFARRRIWQ--LSGGMRQRVGIARALAADPRFLLMDEPFG 163
|
....*.
gi 24662800 175 GLDEVT 180
Cdd:COG4525 164 ALDALT 169
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
15-229 |
9.61e-13 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 69.72 E-value: 9.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVyytvkeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV--TG---- 80
Cdd:COG1135 2 IELENL------SKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERptsgsvlvDGVdlTAlser 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 81 -------NIKMkrdnacyITQddhHQTLL---TVEElmNLACDLKLkNRHKKAEI---MTDILENLHLNHRRNVTAEKLS 147
Cdd:COG1135 76 elraarrKIGM-------IFQ---HFNLLssrTVAE--NVALPLEI-AGVPKAEIrkrVAELLELVGLSDKADAYPSQLS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 148 GGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQpSATIYNYFDSIYVLAKGQCVY 226
Cdd:COG1135 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHE-MDVVRRICDRVAVLENGRIVE 221
|
...
gi 24662800 227 QGS 229
Cdd:COG1135 222 QGP 224
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
36-205 |
1.06e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 67.68 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG-VTGNIKMKrDNACYitqddhhqtlltvEELMNLACDL 114
Cdd:COG2401 42 ERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTpVAGCVDVP-DNQFG-------------REASLIDAIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 115 KLKNRHKKAEIMTDILENLHLNHRRNVTAekLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE 194
Cdd:COG2401 108 RKGDFKDAVELLNAVGLSDAVLWLRRFKE--LSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARR 185
|
170
....*....|..
gi 24662800 195 -GRTIVCTIHQP 205
Cdd:COG2401 186 aGITLVVATHHY 197
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
35-229 |
1.06e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 70.86 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDGVTGNIKM-KRDNACYITQddHHQTL---LTV-EELMN 109
Cdd:COG0488 326 GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAG-ELEPDSGTVKLgETVKIGYFDQ--HQEELdpdKTVlDELRD 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 110 LACDLKlknrhkKAEIMtDILENLHLN---HRRNVtaEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIR 186
Cdd:COG0488 403 GAPGGT------EQEVR-GYLGRFLFSgddAFKPV--GVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEE 473
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 187 LLQamAYEGrTIVCTIHQPsatiynYF-----DSIYVLAKGQCV-YQGS 229
Cdd:COG0488 474 ALD--DFPG-TVLLVSHDR------YFldrvaTRILEFEDGGVReYPGG 513
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
40-255 |
1.15e-12 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 67.88 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVTGNIKMKRD------NACYITQDDHHQTLLTVEELMNLACD 113
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQitepgpDRMVVFQNYSLLPWLTVRENIALAVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 114 LKLKNRHK--KAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI-RLLQA 190
Cdd:TIGR01184 81 RVLPDLSKseRRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQeELMQI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 191 MAYEGRTIVCTIHQPSATIYnYFDSIYVLAKGQCVYQGS------PRatiPFLRLAQLDCPRHYSPSDYII 255
Cdd:TIGR01184 161 WEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIGQilevpfPR---PRDRLEVVEDPSYYDLRNEAL 227
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
15-231 |
1.15e-12 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 68.10 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKerknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SG-FRRDGV----TGNI 82
Cdd:cd03295 1 IEFENVTKRYG---------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMInrlieptSGeIFIDGEdireQDPV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 83 KMKRdNACYITQD----DHhqtlLTVEElmNLACDLKLkNRHKKAEIMTDILENLHL-----NHRRNVTAEKLSGGERKR 153
Cdd:cd03295 72 ELRR-KIGYVIQQiglfPH----MTVEE--NIALVPKL-LKWPKEKIRERADELLALvgldpAEFADRYPHELSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQC----IRLLQAMayeGRTIVCTIHQpsatIYNYF---DSIYVLAKGQCVY 226
Cdd:cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLqeefKRLQQEL---GKTIVFVTHD----IDEAFrlaDRIAIMKNGEIVQ 216
|
....*
gi 24662800 227 QGSPR 231
Cdd:cd03295 217 VGTPD 221
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
28-177 |
1.23e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 69.67 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIKM--KRDN----------------A 89
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIgeKRMNdvppaergvgmvfqsyA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 90 CYitqdDHhqtlLTVEElmNLACDLKLKNRhKKAEI------MTDILENLHLNHRRnvtAEKLSGGERKRLSIALELVDN 163
Cdd:PRK11000 86 LY----PH----LSVAE--NMSFGLKLAGA-KKEEInqrvnqVAEVLQLAHLLDRK---PKALSGGQRQRVAIGRTLVAE 151
|
170
....*....|....
gi 24662800 164 PNIFFLDEPTSGLD 177
Cdd:PRK11000 152 PSVFLLDEPLSNLD 165
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
35-204 |
1.73e-12 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 67.35 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLN-------------AISG----FRRDGVTGNIKMKRDNACYITQDDH 97
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKSSLLRvlnlletpdsgqlNIAGhqfdFSQKPSEKAIRLLRQKVGMVFQQYN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTLLTVEE-LMNLACD-LKLKNRHKKAEIMtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:COG4161 93 LWPHLTVMEnLIEAPCKvLGLSKEQAREKAM-KLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
170 180 190
....*....|....*....|....*....|
gi 24662800 176 LD-EVTaAQCIRLLQAMAYEGRTIVCTIHQ 204
Cdd:COG4161 172 LDpEIT-AQVVEIIRELSQTGITQVIVTHE 200
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
35-205 |
2.16e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 66.37 E-value: 2.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMK-----------RDNACYITqddhHQ---- 99
Cdd:PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-DAGEVLWQgepirrqrdeyHQDLLYLG----HQpgik 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 TLLTVEElmNLACDLKLKNRHKkAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:PRK13538 87 TELTALE--NLRFYQRLHGPGD-DEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
|
170 180
....*....|....*....|....*.
gi 24662800 180 TAAQCIRLLQAMAYEGRTIVCTIHQP 205
Cdd:PRK13538 164 GVARLEALLAQHAEQGGMVILTTHQD 189
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
27-228 |
2.17e-12 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 66.97 E-value: 2.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 27 RKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--DG---VTGNIKMKRDNAcYITQDD----H 97
Cdd:cd03267 24 KSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQptSGevrVAGLVPWKRRKK-FLRRIGvvfgQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTL---LTVEELMNLACDL-KLKNRHKKAEI--MTDILEnlhLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDE 171
Cdd:cd03267 103 KTQLwwdLPVIDSFYLLAAIyDLPPARFKKRLdeLSELLD---LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 172 PTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03267 180 PTIGLDVVAQENIRNFLKEYNRErGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
39-205 |
2.18e-12 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 67.11 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNI----------------KMKRDNACYITQDDHHQTLL 102
Cdd:PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVslvgqplhqmdeearaKLRAKHVGFVFQSFMLIPTL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAA 182
Cdd:PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183
|
170 180
....*....|....*....|....
gi 24662800 183 QCIRLLQAMAYE-GRTIVCTIHQP 205
Cdd:PRK10584 184 KIADLLFSLNREhGTTLILVTHDL 207
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
15-223 |
2.20e-12 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 66.34 E-value: 2.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKnfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRdgVTGNIKMK-------- 85
Cdd:cd03250 1 ISVEDASFTWDSGE-----QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGeLEK--LSGSVSVPgsiayvsq 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 86 ---------RDNACYITQDDHHQTLLTVEelmnlACDLK--LKNRHKKaeIMTDILEnlhlnhrRNVTaekLSGGERKRL 154
Cdd:cd03250 74 epwiqngtiRENILFGKPFDEERYEKVIK-----ACALEpdLEILPDG--DLTEIGE-------KGIN---LSGGQKQRI 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 155 SIALELVDNPNIFFLDEPTSGLDEVTAAQCI-RLLQAMAYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQ 223
Cdd:cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQLQLL--PHADQIVVLDNGR 204
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
19-177 |
2.28e-12 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 67.37 E-value: 2.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 19 DVYYtvkerknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNA-------ISGFRrdgVTGNIKMKRDNacy 91
Cdd:COG1117 18 NVYY------------GDKQALKDINLDIPENKVTALIGPSGCGKSTLLRClnrmndlIPGAR---VEGEILLDGED--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 92 ITQDDhhqtlLTVEEL-----M--------------NLACDLKL---KNRHKKAEIMTDILENLHL----NHRRNVTAEK 145
Cdd:COG1117 80 IYDPD-----VDVVELrrrvgMvfqkpnpfpksiydNVAYGLRLhgiKSKSELDEIVEESLRKAALwdevKDRLKKSALG 154
|
170 180 190
....*....|....*....|....*....|..
gi 24662800 146 LSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:COG1117 155 LSGGQQQRLCIARALAVEPEVLLMDEPTSALD 186
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
35-232 |
2.34e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 67.21 E-value: 2.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG----------FRRDGVTG--NIKMKRDNACYITQDDHHQTLL 102
Cdd:PRK11614 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGdpratsgrivFDGKDITDwqTAKIMREAVAIVPEGRRVFSRM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEElmNLACDLKLKNR---HKKAEIMTDILENLHlnHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:PRK11614 96 TVEE--NLAMGGFFAERdqfQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 24662800 180 TAAQCIRLLQAMAYEGRTIVcTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:PRK11614 172 IIQQIFDTIEQLREQGMTIF-LVEQNANQALKLADRGYVLENGHVVLEDTGDA 223
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
50-177 |
2.52e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 66.91 E-value: 2.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNIkmkrdnacYITQDDHHQTL------------------LTVEELMNLA 111
Cdd:PRK10771 25 GERVAILGPSGAGKSTLLNLIAGFLT-PASGSL--------TLNGQDHTTTPpsrrpvsmlfqennlfshLTVAQNIGLG 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 112 CDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
35-177 |
2.78e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 69.32 E-value: 2.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-DGvtGNIKMKRD-NACYITQDDHHQTLLTVEE--LMNL 110
Cdd:COG0488 9 GGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEpDS--GEVSIPKGlRIGYLPQEPPLDDDLTVLDtvLDGD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 111 ACDLKLKNRHKKAEIMTD------------------------------ILENLHLN---HRRNVTAekLSGGERKRLSIA 157
Cdd:COG0488 87 AELRALEAELEELEAKLAepdedlerlaelqeefealggweaearaeeILSGLGFPeedLDRPVSE--LSGGWRRRVALA 164
|
170 180
....*....|....*....|
gi 24662800 158 LELVDNPNIFFLDEPTSGLD 177
Cdd:COG0488 165 RALLSEPDLLLLDEPTNHLD 184
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
15-223 |
3.23e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 66.34 E-value: 3.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKnfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMkrDNACyITQ 94
Cdd:cd03248 12 VKFQNVTFAYPTRP-------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLL--DGKP-ISQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDH---HQTLLTV--EELM-------NLACDL------KLKNRHKKAEIMTDILEnLHLNHRRNVtAEK---LSGGERKR 153
Cdd:cd03248 81 YEHkylHSKVSLVgqEPVLfarslqdNIAYGLqscsfeCVKEAAQKAHAHSFISE-LASGYDTEV-GEKgsqLSGGQKQR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAmAYEGRTIVCTIHQPSaTIyNYFDSIYVLAKGQ 223
Cdd:cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLS-TV-ERADQILVLDGGR 225
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
39-205 |
3.81e-12 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 69.37 E-value: 3.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLN-------AISGFRRdgVTGN----------IKMKRDNACYITQDDHHQTL 101
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNilgcldkPTSGTYR--VAGQdvatldadalAQLRREHFGFIFQRYHLLSH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTA 181
Cdd:PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
|
170 180
....*....|....*....|....
gi 24662800 182 AQCIRLLQAMAYEGRTIVCTIHQP 205
Cdd:PRK10535 181 EEVMAILHQLRDRGHTVIIVTHDP 204
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
30-247 |
4.12e-12 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 66.75 E-value: 4.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 30 FWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNI--------KMKRDNA------------ 89
Cdd:TIGR02769 17 LFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVsfrgqdlyQLDRKQRrafrrdvqlvfq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 90 -CYITQDDHHQTLLTVEELMNLACDLKLKNRHKKAEIMTDILEnLHLNHRRNVTAEkLSGGERKRLSIALELVDNPNIFF 168
Cdd:TIGR02769 96 dSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVG-LRSEDADKLPRQ-LSGGQLQRINIARALAVKPKLIV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 169 LDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQgspratipfLRLAQLDCPRH 247
Cdd:TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE---------CDVAQLLSFKH 243
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
15-229 |
4.56e-12 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 68.97 E-value: 4.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIKMKRDNACYITQ 94
Cdd:TIGR02203 331 VEFRNVTFRYPGR--------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTL 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDHHQTLLTVEELMNLACDLKLKN-------RHKKAEI--------MTDILENLHLNHRRNV--TAEKLSGGERKRLSIA 157
Cdd:TIGR02203 402 ASLRRQVALVSQDVVLFNDTIANNiaygrteQADRAEIeralaaayAQDFVDKLPLGLDTPIgeNGVLLSGGQRQRLAIA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 158 LELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCVYQGS 229
Cdd:TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS-TIEKA-DRIVVMDDGRIVERGT 550
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
26-230 |
5.21e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 68.68 E-value: 5.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 26 ERKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG---FRRDgvTGNI--KMKRDNAC-YI------- 92
Cdd:TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdqYEPT--SGRIiyHVALCEKCgYVerpskvg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 93 TQDDHHQTLLTVEELMNLACDLKLKNR-HKKAEIM-----------------------------------TDILENLHLN 136
Cdd:TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRiRKRIAIMlqrtfalygddtvldnvlealeeigyegkeavgraVDLIEMVQLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 137 HRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIR-LLQAMAYEGRTIVCTIHQPSaTIYNYFDS 215
Cdd:TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNaLEEAVKASGISMVLTSHWPE-VIEDLSDK 238
|
250
....*....|....*
gi 24662800 216 IYVLAKGQCVYQGSP 230
Cdd:TIGR03269 239 AIWLENGEIKEEGTP 253
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
40-199 |
5.41e-12 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 64.76 E-value: 5.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVTGNIK----MKRDNACYITQDDHHQTLLTVEel 107
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPpasgeitlDGKPVTRRsprdAIRAGIAYVPEDRKREGLVLDL-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 mnlacdlklknrhkkaeimtDILENLHLNHRrnvtaekLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRL 187
Cdd:cd03215 94 --------------------SVAENIALSSL-------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146
|
170
....*....|..
gi 24662800 188 LQAMAYEGRTIV 199
Cdd:cd03215 147 IRELADAGKAVL 158
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
35-229 |
5.49e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 67.06 E-value: 5.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGVTgnikmkrdnacyITQDDHHQT------ 100
Cdd:COG4152 12 GDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGIlapdsgevLWDGEP------------LDPEDRRRIgylpee 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 --L---LTVEE-LMNLAcdlKLKNRhKKAEIMTDI---LENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDE 171
Cdd:COG4152 80 rgLypkMKVGEqLVYLA---RLKGL-SKAEAKRRAdewLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 172 PTSGLDEVTAAQCIRLLQAMAYEGRTIV------------CtihqpsatiynyfDSIYVLAKGQCVYQGS 229
Cdd:COG4152 156 PFSGLDPVNVELLKDVIRELAAKGTTVIfsshqmelveelC-------------DRIVIINKGRKVLSGS 212
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
40-233 |
9.71e-12 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 65.67 E-value: 9.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIK---------MKRDNACYITQ----DDHHQTLLTVEE 106
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISilgqptrqaLQKNLVAYVPQseevDWSFPVLVEDVV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 107 LMNLACDLKLKNRHKKA--EIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQC 184
Cdd:PRK15056 102 MMGRYGHMGWLRRAKKRdrQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 24662800 185 IRLLQAMAYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQCVYQGSPRAT 233
Cdd:PRK15056 182 ISLLRELRDEGKTMLVSTHNLGSV--TEFCDYTVMVKGTVLASGPTETT 228
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
15-231 |
9.76e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 65.91 E-value: 9.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKErknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLL---NAISGFRRDGVT--------GNIK 83
Cdd:PRK13647 5 IEVEDLHFRYKD---------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLlhlNGIYLPQRGRVKvmgrevnaENEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 84 MKRDNACYITQDDHHQTL-LTVEE-------LMNLACDlKLKNRHKKAeimtdiLENLHLNHRRNVTAEKLSGGERKRLS 155
Cdd:PRK13647 76 WVRSKVGLVFQDPDDQVFsSTVWDdvafgpvNMGLDKD-EVERRVEEA------LKAVRMWDFRDKPPYHLSYGQKKRVA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 156 IALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPR 231
Cdd:PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVLKEGRVLAEGDKS 223
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
14-230 |
1.22e-11 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 64.44 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 14 NVEFQDVyyTVKERKNfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIsgFRR-DGVTGNIKMK------- 85
Cdd:cd03244 2 DIEFKNV--SLRYRPN------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL--FRLvELSSGSILIDgvdiski 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 86 -----RDNACYITQDdhhQTLL--TVEElmNLAcdlkLKNRHKKAEIMtDILENLHLNHRRNVTAEKL-----------S 147
Cdd:cd03244 72 glhdlRSRISIIPQD---PVLFsgTIRS--NLD----PFGEYSDEELW-QALERVGLKEFVESLPGGLdtvveeggenlS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 148 GGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQaMAYEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCVYQ 227
Cdd:cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR-EAFKDCTVLTIAHRLD-TIIDS-DRILVLDKGRVVEF 218
|
...
gi 24662800 228 GSP 230
Cdd:cd03244 219 DSP 221
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
35-234 |
1.25e-11 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 65.39 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG----------VTGNIKMKRDNAcyITQDD 96
Cdd:PRK10253 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTpahghvwlDGehiqhyaskeVARRIGLLAQNA--TTPGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 hhqtlLTVEELMNLA----CDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:PRK10253 96 -----ITVQELVARGryphQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24662800 173 TSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:PRK10253 171 TTWLDISHQIDLLELLSELNREkGYTLAAVLHDLNQAC-RYASHLIALREGKIVAQGAPKEIV 232
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
35-218 |
1.30e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 65.25 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAisgFRR-------DGVTGNIKM--------------KRDNACYIT 93
Cdd:PRK14267 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRT---FNRllelneeARVEGEVRLfgrniyspdvdpieVRREVGMVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 94 QDDHHQTLLTVEElmNLACDLKLKNRHKKAEIMTDILENL--------HLNHRRNVTAEKLSGGERKRLSIALELVDNPN 165
Cdd:PRK14267 92 QYPNPFPHLTIYD--NVAIGVKLNGLVKSKKELDERVEWAlkkaalwdEVKDRLNDYPSNLSGGQRQRLVIARALAMKPK 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 166 IFFLDEPTSGLDEVTAAQCIRLLQAMAYEgRTIVCTIHQP--SATIYNYFDSIYV 218
Cdd:PRK14267 170 ILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPaqAARVSDYVAFLYL 223
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
40-229 |
1.42e-11 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 66.36 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGV------TGNIKMKRDNACYITQddhHQTLL--- 102
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERptsgrvlvDGQdltalsEKELRKARRQIGMIFQ---HFNLLssr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEElmNLACDLKLKNRhKKAEIMTDILENLH---LNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:PRK11153 98 TVFD--NVALPLELAGT-PKAEIKARVTELLElvgLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24662800 180 TAAQCIRLLQAMAYE-GRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQGS 229
Cdd:PRK11153 175 TTRSILELLKDINRElGLTIVLITHE-MDVVKRICDRVAVIDAGRLVEQGT 224
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-178 |
1.56e-11 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 64.35 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 1 MEQSQNLLakQSKNVEFQdvyytvkerknfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF------- 73
Cdd:PRK10247 1 MQENSPLL--QLQNVGYL---------------AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLisptsgt 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 74 ----RRDGVTGNIKMKRDNACYITQDdhhQTLL--TVEElmNLACDLKLKNRHKKAEIMTDILENLHL-NHRRNVTAEKL 146
Cdd:PRK10247 64 llfeGEDISTLKPEIYRQQVSYCAQT---PTLFgdTVYD--NLIFPWQIRNQQPDPAIFLDDLERFALpDTILTKNIAEL 138
|
170 180 190
....*....|....*....|....*....|..
gi 24662800 147 SGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:PRK10247 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDE 170
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
36-231 |
1.60e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 65.45 E-value: 1.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DGVtgNIKMKRDNACYIT-------QDDHHQT 100
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKptsgkiiiDGV--DITDKKVKLSDIRkkvglvfQYPEYQL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LL-TVEE-----LMNLAC-DLKLKNRHKKAEIMTdileNLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPT 173
Cdd:PRK13637 97 FEeTIEKdiafgPINLGLsEEEIENRVKRAMNIV----GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 174 SGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPR 231
Cdd:PRK13637 173 AGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
35-203 |
1.68e-11 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 64.13 E-value: 1.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNI--------KMK-------RDNACYITQDDHHQ 99
Cdd:PRK10908 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIwfsghditRLKnrevpflRRQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 TLLTVEElmNLACDLKLKNRHKKaeimtDIlenlhlnhRRNVTAE---------------KLSGGERKRLSIALELVDNP 164
Cdd:PRK10908 92 MDRTVYD--NVAIPLIIAGASGD-----DI--------RRRVSAAldkvglldkaknfpiQLSGGEQQRVGIARAVVNKP 156
|
170 180 190
....*....|....*....|....*....|....*....
gi 24662800 165 NIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH 203
Cdd:PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
36-230 |
2.33e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 65.26 E-value: 2.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR----DGVTGNIKMKRDNACYITQDDHHQTLL--------- 102
Cdd:PRK13631 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKskygTIQVGDIYIGDKKNNHELITNPYSKKIknfkelrrr 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 ---------------TVE-ELMNLACDLKL-KNR-HKKAEIMtdiLENLHLNHR-RNVTAEKLSGGERKRLSIALELVDN 163
Cdd:PRK13631 118 vsmvfqfpeyqlfkdTIEkDIMFGPVALGVkKSEaKKLAKFY---LNKMGLDDSyLERSPFGLSGGQKRRVAIAGILAIQ 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 164 PNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK13631 195 PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTGTP 260
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
43-178 |
2.42e-11 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 65.63 E-value: 2.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 43 VSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgVTGNIKMKrdnacyiTQDDHH------------QTL-----LTVE 105
Cdd:PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLD-------GVDLSHvppyqrpinmmfQSYalfphMTVE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 106 ElmNLACDLKlKNRHKKAEIMTDILENLHLNHRRNVTAEK---LSGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:PRK11607 110 Q--NIAFGLK-QDKLPKAEIASRVNEMLGLVHMQEFAKRKphqLSGGQRQRVALARSLAKRPKLLLLDEPMGALDK 182
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
23-229 |
3.46e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 66.51 E-value: 3.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 23 TVKERKNFWrVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDGVTGNIKMKRDNAcYITQDDHHQTLl 102
Cdd:TIGR00957 638 TVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVHMKGSVA-YVPQQAWIQND- 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEELMNLACDLKlKNRHKKAEIMTDILENLHL--NHRRNVTAEK---LSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:TIGR00957 714 SLRENILFGKALN-EKYYQQVLEACALLPDLEIlpSGDRTEIGEKgvnLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 24662800 178 EVTAAQCI-RLLQAMA-YEGRTIVCTIHqpSATIYNYFDSIYVLAKGQCVYQGS 229
Cdd:TIGR00957 793 AHVGKHIFeHVIGPEGvLKNKTRILVTH--GISYLPQVDVIIVMSGGKISEMGS 844
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
54-194 |
3.47e-11 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 65.12 E-value: 3.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 54 AIMGPSGAGKSSLLNAISGFRR--------------DGVTG-NIKMKRDNACYITQDDH---HqtlLTVEElmNLACDLK 115
Cdd:COG4148 29 ALFGPSGSGKTTLLRAIAGLERpdsgrirlggevlqDSARGiFLPPHRRRIGYVFQEARlfpH---LSVRG--NLLYGRK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 116 LKNRHKKAEIMTDILENLHLNH---RRnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMA 192
Cdd:COG4148 104 RAPRAERRISFDEVVELLGIGHlldRR---PATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERLR 180
|
..
gi 24662800 193 YE 194
Cdd:COG4148 181 DE 182
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
27-177 |
8.94e-11 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 63.63 E-value: 8.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 27 RKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTGNIKMKRDNACYITQD- 95
Cdd:COG1118 9 SKRF----GSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETpdsgrivlNGrdLFTNLPPRERRVGFVFQHy 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 ---DHhqtlLTVEElmNLACDLKlKNRHKKAEIMTDILENL------HLNHRRnvtAEKLSGGERKRLSIALELVDNPNI 166
Cdd:COG1118 85 alfPH----MTVAE--NIAFGLR-VRPPSKAEIRARVEELLelvqleGLADRY---PSQLSGGQRQRVALARALAVEPEV 154
|
170
....*....|.
gi 24662800 167 FFLDEPTSGLD 177
Cdd:COG1118 155 LLLDEPFGALD 165
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
27-225 |
9.82e-11 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 60.52 E-value: 9.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 27 RKNFwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDGvtGNIKMkrdnacyitqDDHHQTLLTVE 105
Cdd:cd03216 7 TKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLyKPDS--GEILV----------DGKEVSFASPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 106 ElmnlacdlklKNRHKKAEIMtdilenlhlnhrrnvtaeKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI 185
Cdd:cd03216 71 D----------ARRAGIAMVY------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 24662800 186 RLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCV 225
Cdd:cd03216 123 KVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVV 161
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
45-186 |
9.93e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 62.43 E-value: 9.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 45 GSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDGvtGNIKMKRDNACYITQDDHHQTLLTVEELMNLacdlKLKNRHKKA 123
Cdd:cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGvLKPDE--GDIEIELDTVSYKPQYIKADYEGTVRDLLSS----ITKDFYTHP 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 124 EIMTDILENLHLNH--RRNVTaeKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD---EVTAAQCIR 186
Cdd:cd03237 94 YFKTEIAKPLQIEQilDREVP--ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDveqRLMASKVIR 159
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
37-234 |
1.51e-10 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 64.38 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 37 RRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMkrdNACYITQDDHHQ----------------- 99
Cdd:TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILL---NGFSLKDIDRHTlrqfinylpqepyifsg 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 TLL----------TVEELMNLACDLklknrhkkAEIMTDIlENLHLNHRRNVTAE--KLSGGERKRLSIALELVDNPNIF 167
Cdd:TIGR01193 563 SILenlllgakenVSQDEIWAACEI--------AEIKDDI-ENMPLGYQTELSEEgsSISGGQKQRIALARALLTDSKVL 633
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLqaMAYEGRTIVCTIHQpsATIYNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:TIGR01193 634 ILDESTSNLDTITEKKIVNNL--LNLQDKTIIFVAHR--LSVAKQSDKIIVLDHGKIIEQGSHDELL 696
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
37-268 |
1.58e-10 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 62.15 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 37 RRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG-------VTGNIKMK---------RDNACY---ITQDDH 97
Cdd:PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGgaprgarVTGDVTLNgeplaaidaPRLARLravLPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTLLTVEELMNLACDLKLKN----RHKKAEIMTDILENLHLNH--RRNVTAekLSGGERKRLSIALELVD--------- 162
Cdd:PRK13547 94 PAFAFSAREIVLLGRYPHARRagalTHRDGEIAWQALALAGATAlvGRDVTT--LSGGELARVQFARVLAQlwpphdaaq 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 163 NPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTI-HQPSATIyNYFDSIYVLAKGQCVYQGSPRATIPFLRLAQ 241
Cdd:PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIvHDPNLAA-RHADRIAMLADGAIVAHGAPADVLTPAHIAR 250
|
250 260 270
....*....|....*....|....*....|
gi 24662800 242 ldCprhYSpsdYIIELVDAEDGH---LVPA 268
Cdd:PRK13547 251 --C---YG---FAVRLVDAGDGVppvIVPA 272
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
50-204 |
2.38e-10 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 61.18 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAI-------SG----------FRRDGVTGNIKMKRDNACYITQDDHHQTLLTV-EELMNLA 111
Cdd:PRK11124 28 GETLVLLGPSGAGKSSLLRVLnllemprSGtlniagnhfdFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVqQNLIEAP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 112 CD-LKLKNRHKKAEIMtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD-EVTaAQCIRLLQ 189
Cdd:PRK11124 108 CRvLGLSKDQALARAE-KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDpEIT-AQIVSIIR 185
|
170
....*....|....*
gi 24662800 190 AMAYEGRTIVCTIHQ 204
Cdd:PRK11124 186 ELAETGITQVIVTHE 200
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-230 |
2.40e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 61.69 E-value: 2.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 1 MEQSQNLLakQSKNVEFQ---DVYYTvkerknfwrvtgerriLNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG----- 72
Cdd:PRK13648 1 MEDKNSII--VFKNVSFQyqsDASFT----------------LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGiekvk 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 73 -----FRRDGVTG-NIKMKRDNACYITQDDHHQTlltVEELMNLACDLKLKNR---HKKA-EIMTDILENLHLNHRRNVT 142
Cdd:PRK13648 63 sgeifYNNQAITDdNFEKLRKHIGIVFQNPDNQF---VGSIVKYDVAFGLENHavpYDEMhRRVSEALKQVDMLERADYE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 143 AEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGR-TIVCTIHQPSATIYNyfDSIYVLAK 221
Cdd:PRK13648 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNiTIISITHDLSEAMEA--DHVIVMNK 217
|
....*....
gi 24662800 222 GQCVYQGSP 230
Cdd:PRK13648 218 GTVYKEGTP 226
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
55-206 |
2.45e-10 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 59.47 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 55 IMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNAC-YITQddhhQTLL---TVEELMNLACDlklknrhkkaeimtdil 130
Cdd:cd03223 32 ITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLlFLPQ----RPYLplgTLREQLIYPWD----------------- 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 131 enlhlnhrrnvtaEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMayeGRTIVCTIHQPS 206
Cdd:cd03223 90 -------------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS 149
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
37-188 |
3.97e-10 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 60.87 E-value: 3.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 37 RRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF---RRDGVT-GNIKMKRDNACYITQDDHHQTLLTVEELMNLAC 112
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFvpyQHGSITlDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 113 DLKLK--NRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLL 188
Cdd:PRK11248 94 GLQLAgvEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
15-229 |
4.01e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 62.53 E-value: 4.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYtvkerknfwRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGVtgNIkmkR 86
Cdd:COG5265 358 VRFENVSF---------GYDPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFydvtsgriLIDGQ--DI---R 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DnacyITQDDHHQ--------TLL----------------TVEELMNLAcdlklknrhKKAEIMtDILENLHLNHRRNVt 142
Cdd:COG5265 424 D----VTQASLRAaigivpqdTVLfndtiayniaygrpdaSEEEVEAAA---------RAAQIH-DFIESLPDGYDTRV- 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 143 AE---KLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSaTIYNYfDSIYVL 219
Cdd:COG5265 489 GErglKLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVA-RGRTTLVIAHRLS-TIVDA-DEILVL 565
|
250
....*....|
gi 24662800 220 AKGQCVYQGS 229
Cdd:COG5265 566 EAGRIVERGT 575
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-232 |
4.69e-10 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 60.55 E-value: 4.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 1 MEQSQNLlakqsknVEFQDVYYTvkerknfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDgvT 79
Cdd:PRK11831 1 EQSVANL-------VDMRGVSFT----------RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGqIAPD--H 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 GNIKMKRDNACYITQDDHHQ---------------TLLTVEElmNLACDLKLKNRHKKAEIMTDI---LENLHLNHRRNV 141
Cdd:PRK11831 62 GEILFDGENIPAMSRSRLYTvrkrmsmlfqsgalfTDMNVFD--NVAYPLREHTQLPAPLLHSTVmmkLEAVGLRGAAKL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 142 TAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQ-PSatIYNYFDSIYVL 219
Cdd:PRK11831 140 MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDvPE--VLSIADHAYIV 217
|
250
....*....|...
gi 24662800 220 AKGQCVYQGSPRA 232
Cdd:PRK11831 218 ADKKIVAHGSAQA 230
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
15-232 |
4.94e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 61.00 E-value: 4.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNFwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLL---NA----------ISGFRRDGVTGN 81
Cdd:PRK13641 3 IKFENVDYIYSPGTPM-----EKKGLDNISFELEEGSFVALVGHTGSGKSTLMqhfNAllkpssgtitIAGYHITPETGN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 82 IKMK--RDNACYITQDDHHQ----TLLtvEELM----NL-ACDLKLKNRH----KKAEIMTDILENlhlnhrrnvTAEKL 146
Cdd:PRK13641 78 KNLKklRKKVSLVFQFPEAQlfenTVL--KDVEfgpkNFgFSEDEAKEKAlkwlKKVGLSEDLISK---------SPFEL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 147 SGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVY 226
Cdd:PRK13641 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIK 225
|
....*.
gi 24662800 227 QGSPRA 232
Cdd:PRK13641 226 HASPKE 231
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
48-219 |
5.96e-10 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 60.07 E-value: 5.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 48 RNGQLSAIMGPSGAGKSSLLNAISGfrrdgvtgniKMKrDNACYITQDDHHQTLLTV---EELMNLACDLK--------- 115
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAG----------KLK-PNLGKFDDPPDWDEILDEfrgSELQNYFTKLLegdvkvivk 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 116 -----------------LKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD- 177
Cdd:cd03236 93 pqyvdlipkavkgkvgeLLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDi 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24662800 178 --EVTAAQCIRLLqamAYEGRTIVCTIHQPSatIYNYF-DSIYVL 219
Cdd:cd03236 173 kqRLNAARLIREL---AEDDNYVLVVEHDLA--VLDYLsDYIHCL 212
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
14-177 |
5.97e-10 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 61.40 E-value: 5.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 14 NVEFQDVyytvkeRKNFwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdgVTG------------- 80
Cdd:PRK11650 3 GLKLQAV------RKSY---DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSgeiwiggrvvnel 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 81 -----NIKMKRDN-ACYitqdDHhqtlLTVEElmNLAcdLKLKNRH-KKAEIMT------DILENLHLNHRRnvtAEKLS 147
Cdd:PRK11650 72 epadrDIAMVFQNyALY----PH----MSVRE--NMA--YGLKIRGmPKAEIEErvaeaaRILELEPLLDRK---PRELS 136
|
170 180 190
....*....|....*....|....*....|
gi 24662800 148 GGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
31-230 |
6.16e-10 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 60.19 E-value: 6.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 31 WRVTGeRRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIsGFRRDGVTGNI------------KMKRDNACYITQDDHH 98
Cdd:PRK10575 19 FRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEIlldaqpleswssKAFARKVAYLPQQLPA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 QTLLTVEELMNLA--------CDLKLKNRHKKAEIMTdiLENLH-LNHRrnvTAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:PRK10575 97 AEGMTVRELVAIGrypwhgalGRFGAADREKVEEAIS--LVGLKpLAHR---LVDSLSGGERQRAWIAMLVAQDSRCLLL 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQErGLTVIAVLHDINMAA-RYCDYLVALRGGEMIAQGTP 232
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
35-201 |
1.24e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 60.13 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAG--KSSLLNAISG-------FRRDGVTGNIK-MKRDNACY-ITQDDHHQTLLT 103
Cdd:NF000106 24 GEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GpdagrrpWRF*TWCANRRaLRRTIG*HrPVR*GRRESFSG 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEELMNLACDLKLKNRHKKAEiMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQ 183
Cdd:NF000106 104 RENLYMIGR*LDLSRKDARAR-ADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNE 182
|
170
....*....|....*...
gi 24662800 184 CIRLLQAMAYEGRTIVCT 201
Cdd:NF000106 183 VWDEVRSMVRDGATVLLT 200
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
35-188 |
1.32e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 59.17 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG----------FR-RDGVTGNI---------KMKRDNACYITQ 94
Cdd:PRK11701 17 GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSArlapdagevhYRmRDGQLRDLyalseaerrRLLRTEWGFVHQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDHHQTLLTV-------EELMNLAcdlklkNRH--KKAEIMTDILENLHLNHRR-NVTAEKLSGGERKRLSIALELVDNP 164
Cdd:PRK11701 97 HPRDGLRMQVsaggnigERLMAVG------ARHygDIRATAGDWLERVEIDAARiDDLPTTFSGGMQQRLQIARNLVTHP 170
|
170 180
....*....|....*....|....*
gi 24662800 165 NIFFLDEPTSGLD-EVTAaqciRLL 188
Cdd:PRK11701 171 RLVFMDEPTGGLDvSVQA----RLL 191
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
40-258 |
1.40e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 59.34 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDG---VTGNI-KMKRDNACYITQDDHHQTLLTVEEL 107
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLfeefegkvKIDGellTAENVwNLRRKIGMVFQNPDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 MNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRL 187
Cdd:PRK13642 103 VAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 188 LQAMAYEGRTIVCTI-HQPSATIYNyfDSIYVLAKGQCVYQGSPR---AT----------IPF-------LRLAQLDCPR 246
Cdd:PRK13642 183 IHEIKEKYQLTVLSItHDLDEAASS--DRILVMKAGEIIKEAAPSelfATsedmveigldVPFssnlmkdLRKNGFDLPE 260
|
250
....*....|..
gi 24662800 247 HYSPSDYIIELV 258
Cdd:PRK13642 261 KYLSEDELVELL 272
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
36-273 |
1.66e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 60.49 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKS---------------------------SLLNAISGFRRdGVTGN-IKMkrd 87
Cdd:PRK15134 21 VRTVVNDVSLQIEAGETLALVGESGSGKSvtalsilrllpsppvvypsgdirfhgeSLLHASEQTLR-GVRGNkIAM--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 88 nacyITQDD--HHQTLLTVEELMNLACDLKLKNRHK--KAEIMtDILENLHLNH---RRNVTAEKLSGGERKRLSIALEL 160
Cdd:PRK15134 97 ----IFQEPmvSLNPLHTLEKQLYEVLSLHRGMRREaaRGEIL-NCLDRVGIRQaakRLTDYPHQLSGGERQRVMIAMAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 161 VDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRATipflrla 240
Cdd:PRK15134 172 LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL------- 244
|
250 260 270
....*....|....*....|....*....|....
gi 24662800 241 qLDCPRHyspsDYIIELVDAE-DGHLVPALSDLT 273
Cdd:PRK15134 245 -FSAPTH----PYTQKLLNSEpSGDPVPLPEPAS 273
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
35-199 |
1.76e-09 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 58.21 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRI--LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SG---FRRDGVTGN---------IKMKRDNACYIT 93
Cdd:COG4778 20 GGKRLpvLDGVSFSVAAGECVALTGPSGAGKSTLLKCIygnylpdSGsilVRHDGGWVDlaqaspreiLALRRRTIGYVS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 94 QddhhqtLLTV-----------EELMNLACDlklknRHKKAEIMTDILENLHLnhrrnvtAEKL--------SGGERKRL 154
Cdd:COG4778 100 Q------FLRViprvsaldvvaEPLLERGVD-----REEARARARELLARLNL-------PERLwdlppatfSGGEQQRV 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24662800 155 SIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIV 199
Cdd:COG4778 162 NIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAII 206
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
43-230 |
1.92e-09 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 58.41 E-value: 1.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 43 VSGSFRNGQLSAIMGPSGAGKSSLLNAISGFrrdgVTGNIKMKRDNAC--------------YITQDDH--------HQT 100
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL----LPGSGSIQFAGQPleawsaaelarhraYLSQQQTppfampvfQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 101 LLTVEELMNLACDLKLKNRHKKAEIMTDILEnlhlnhrRNVTAekLSGGE--RKRLSIALELVD---NPN--IFFLDEPT 173
Cdd:PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLG-------RSVNQ--LSGGEwqRVRLAAVVLQVWpdiNPAgqLLLLDEPM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 174 SGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATiYNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK03695 162 NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT-LRHADRVWLLKQGKLLASGRR 217
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
35-242 |
2.17e-09 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 60.15 E-value: 2.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGVTGNIKMKRDNACYI---TQDdhhQTLL- 102
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVwpptagsvRLDGADLSQWDREELGRHIgylPQD---VELFd 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 -TVEElmNLAcdlklknRHKKAE----------------IM-------TDILENLHLnhrrnvtaekLSGGERKRLSIAL 158
Cdd:COG4618 420 gTIAE--NIA-------RFGDADpekvvaaaklagvhemILrlpdgydTRIGEGGAR----------LSGGQRQRIGLAR 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 159 ELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATiyNYFDSIYVLAKGQCVYQGsPRATIpflr 238
Cdd:COG4618 481 ALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPSLL--AAVDKLLVLRDGRVQAFG-PRDEV---- 553
|
....
gi 24662800 239 LAQL 242
Cdd:COG4618 554 LARL 557
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
38-230 |
2.43e-09 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 57.42 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 38 RILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIsgFR-RDGVTGNIKMK------------RDNACYITQDdhhQTLLTv 104
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILAL--FRfLEAEEGKIEIDgidistipledlRSSLTIIPQD---PTLFS- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 eelMNLACDLKLKNRHKKAEIMTDIlenlhlnhRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQC 184
Cdd:cd03369 96 ---GTIRSNLDPFDEYSDEEIYGAL--------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24662800 185 IRLLQAmAYEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCVYQGSP 230
Cdd:cd03369 165 QKTIRE-EFTNSTILTIAHRLR-TIIDY-DKILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
12-248 |
2.85e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 58.48 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 12 SKNVEFQDVYYTVKERKNFwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--RRDGVT---------- 79
Cdd:PRK13645 4 SKDIILDNVSYTYAKKTPF-----EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLiiSETGQTivgdyaipan 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 ----GNIKMKRDNACYITQDDHHQTLL-TVEElmnlacDLKLKNRH---KKAEIMTDILENLHLNHRRNVTAEK----LS 147
Cdd:PRK13645 79 lkkiKEVKRLRKEIGLVFQFPEYQLFQeTIEK------DIAFGPVNlgeNKQEAYKKVPELLKLVQLPEDYVKRspfeLS 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 148 GGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVY 226
Cdd:PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMD-QVLRIADEVIVMHEGKVIS 231
|
250 260
....*....|....*....|....*
gi 24662800 227 QGSP---RATIPFLRLAQLDCPRHY 248
Cdd:PRK13645 232 IGSPfeiFSNQELLTKIEIDPPKLY 256
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
38-225 |
3.59e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 59.54 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 38 RILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------RRDGVTGNIKMKRD--NA--CYITQDDHHQTLLTVE 105
Cdd:PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNyqpdagsiLIDGQEMRFASTTAalAAgvAIIYQELHLVPEMTVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 106 E---LMNLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAA 182
Cdd:PRK11288 98 EnlyLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24662800 183 QCIRLLQAMAYEGRTIVCTIHQpSATIYNYFDSIYVLAKGQCV 225
Cdd:PRK11288 178 QLFRVIRELRAEGRVILYVSHR-MEEIFALCDAITVFKDGRYV 219
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
35-180 |
5.22e-09 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 57.38 E-value: 5.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG----VTGNIKMK--RDNACYITQDdhhQTLLTVEELM 108
Cdd:PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSagelLAGTAPLAeaREDTRLMFQD---ARLLPWKKVI 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24662800 109 -NLACDLKLKNRHKKAEimtdILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVT 180
Cdd:PRK11247 100 dNVGLGLKGQWRDAALQ----ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
34-231 |
7.44e-09 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 57.27 E-value: 7.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 34 TGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLL------------------NAISGFRRDGVtgnIKMKRDNACYITQd 95
Cdd:cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLrcinrlieptsgkvlidgQDIAAMSRKEL---RELRRKKISMVFQ- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 dhHQTLL---TVeeLMNLACDLKL-----KNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIF 167
Cdd:cd03294 110 --SFALLphrTV--LENVAFGLEVqgvprAEREERAA---EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 168 FLDEPTSGLDEVtaaqcIR------LLQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSPR 231
Cdd:cd03294 183 LMDEAFSALDPL-----IRremqdeLLRLQAELQKTIVFITHDLDEAL-RLGDRIAIMKDGRLVQVGTPE 246
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
35-228 |
8.04e-09 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 56.39 E-value: 8.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDgvTGNIKMKRDNACYIT-----QDDhhqtlLTVEELM 108
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGiYPPD--SGTVTVRGRVSSLLGlgggfNPE-----LTGRENI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 109 NLACDLKLKNRHKKAEIMTDILE--------NLHLNHrrnvtaekLSGGERKRL--SIALELvdNPNIFFLDEPTSGLDE 178
Cdd:cd03220 106 YLNGRLLGLSRKEIDEKIDEIIEfselgdfiDLPVKT--------YSSGMKARLafAIATAL--EPDILLIDEVLAVGDA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 24662800 179 VTAAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQG 228
Cdd:cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
18-203 |
1.03e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.02 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 18 QDVYYTVKERKnfwRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVTGNIKMKRDNACYITQDDH 97
Cdd:TIGR03719 2 QYIYTMNRVSK---VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQPGIKVGYLPQEPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 HQTLLTVEELMNLACDLKLKNRHKKAEIMT--------------------DILE--NLH-LNHRRNVTAE---------- 144
Cdd:TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAkyaepdadfdklaaeqaelqEIIDaaDAWdLDSQLEIAMDalrcppwdad 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 145 --KLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQamAYEGrTIVCTIH 203
Cdd:TIGR03719 159 vtKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQ--EYPG-TVVAVTH 216
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
48-203 |
1.09e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 58.49 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 48 RNGQLSAIMGPSGAGKSSLLNAISG----------FRRDGVTGNIKMKRDNACYITQDDHHQTLLTVEELMNLACDLKLK 117
Cdd:TIGR01257 1963 RPGECFGLLGVNGAGKTTTFKMLTGdttvtsgdatVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV 2042
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 118 NRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRT 197
Cdd:TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122
|
....*.
gi 24662800 198 IVCTIH 203
Cdd:TIGR01257 2123 VVLTSH 2128
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
20-189 |
1.64e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 57.39 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 20 VYYTVKeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIsgFRRDGVTGNIKMkrdnacyitqDDHHQ 99
Cdd:COG4172 283 VWFPIK-RGLFRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLAL--LRLIPSEGEIRF----------DGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 TLLTVEELMNLACDLK---------LKNRHKKAEImtdILENLHLNH-------RRNVTAEKL----------------- 146
Cdd:COG4172 350 DGLSRRALRPLRRRMQvvfqdpfgsLSPRMTVGQI---IAEGLRVHGpglsaaeRRARVAEALeevgldpaarhryphef 426
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24662800 147 SGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQ 189
Cdd:COG4172 427 SGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLR 469
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
50-204 |
2.07e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 55.03 E-value: 2.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAISG---------------FRRDGVTGNIKMKRDNACYITQDdhhQTLL--TVEELMNLAC 112
Cdd:cd03290 27 GQLTMIVGQVGCGKSSLLLAILGemqtlegkvhwsnknESEPSFEATRSRNRYSVAYAAQK---PWLLnaTVEENITFGS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 113 DLKlKNRHKKAEIMTDILENLHLNHRRNVT--AEK---LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIR- 186
Cdd:cd03290 104 PFN-KQRYKAVTDACSLQPDIDLLPFGDQTeiGERginLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQe 182
|
170
....*....|....*....
gi 24662800 187 -LLQAMAYEGRTIVCTIHQ 204
Cdd:cd03290 183 gILKFLQDDKRTLVLVTHK 201
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
40-206 |
2.14e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 54.25 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAisGFRRDGVTGNIKMKRDNAcyitqddhHQTLLTVEELMNLacdlklknr 119
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNE--GLYASGKARLISFLPKFS--------RNKLIFIDQLQFL--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 120 hkkaeimTDI-LENLHLNHRrnvtAEKLSGGERKRLSIALELVDNP--NIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGR 196
Cdd:cd03238 72 -------IDVgLGYLTLGQK----LSTLSGGELQRVKLASELFSEPpgTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
|
170
....*....|
gi 24662800 197 TIVCTIHQPS 206
Cdd:cd03238 141 TVILIEHNLD 150
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
40-199 |
2.38e-08 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 56.95 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDGvtGNI-----KMKRDNacyiTQDDH-------HQTL----- 101
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILSGvYQPDS--GEIlldgePVRFRS----PRDAQaagiaiiHQELnlvpn 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEElmNLACDLKLKNR----HKKAEIMT-DILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGL 176
Cdd:COG1129 94 LSVAE--NIFLGREPRRGglidWRAMRRRArELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASL 171
|
170 180
....*....|....*....|...
gi 24662800 177 DEVTAAQCIRLLQAMAYEGRTIV 199
Cdd:COG1129 172 TEREVERLFRIIRRLKAQGVAII 194
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
40-307 |
3.96e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 54.99 E-value: 3.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNAC-------------YITQDDHHQTL-LTVE 105
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGdfsklqgirklvgIVFQNPETQFVgRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 106 ELMNLACD------LKLKNRHKKAeimtdiLENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:PRK13644 97 EDLAFGPEnlclppIEIRKRVDRA------LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 180 TAAQCIRLLQAMAYEGRTIVCTIHQPSAtiYNYFDSIYVLAKGQCVYQGSPRATIPFLRLAQLdcprhyspsdyiielvd 259
Cdd:PRK13644 171 SGIAVLERIKKLHEKGKTIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL----------------- 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 24662800 260 aedGHLVPALSDLTENGKLIYVVSQSEQLAPQQAvttmFLEQQKRPFL 307
Cdd:PRK13644 232 ---GLTPPSLIELAENLKMHGVVIPWENTSSPSS----FAEEICRLFL 272
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
36-228 |
4.44e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 56.26 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SGFRR-----------------------------DGVT 79
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIqrhfdvsEGDIRfhdipltklqldswrsrlavvsqtpflfsDTVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 GNIKMKRDNAcyiTQDDhhqtlltVEELMNLACdlklknrhkkaeIMTDILeNLHLNHRRNVtAEK---LSGGERKRLSI 156
Cdd:PRK10789 407 NNIALGRPDA---TQQE-------IEHVARLAS------------VHDDIL-RLPQGYDTEV-GERgvmLSGGQKQRISI 462
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 157 ALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAyEGRTIVCTIHQPSATIYNyfDSIYVLAKGQCVYQG 228
Cdd:PRK10789 463 ARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEA--SEILVMQHGHIAQRG 531
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
41-230 |
6.50e-08 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 54.23 E-value: 6.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 41 NGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDgvTGNIKMKRDNAcyITQDDHHQTL----------------LTV 104
Cdd:PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQH--IEGLPGHQIArmgvvrtfqhvrlfreMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EELMNLACDLKLKN------------RHKKAEIMTDI---LENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFL 169
Cdd:PRK11300 98 IENLLVAQHQQLKTglfsgllktpafRRAESEALDRAatwLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 170 DEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK11300 178 DEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
27-189 |
8.14e-08 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 54.29 E-value: 8.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 27 RKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDGVT-GNI--------KMK-------RDNA 89
Cdd:COG0444 8 KVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLlPPPGITsGEIlfdgedllKLSekelrkiRGRE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 90 C-YITQDDhhQT----LLTVEELMNLAcdLKLKNRHKKAEIMT---DILENLHLNHRRNVtAEK----LSGGERKRLSIA 157
Cdd:COG0444 88 IqMIFQDP--MTslnpVMTVGDQIAEP--LRIHGGLSKAEAREraiELLERVGLPDPERR-LDRypheLSGGMRQRVMIA 162
|
170 180 190
....*....|....*....|....*....|..
gi 24662800 158 LELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQ 189
Cdd:COG0444 163 RALALEPKLLIADEPTTALDVTIQAQILNLLK 194
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
22-229 |
9.24e-08 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 54.32 E-value: 9.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 22 YTVKER--------KNFWRvtGERRILNGVSG-SFR--NGQLSAIMGPSGAGKSSLLNAISG----------------FR 74
Cdd:COG4586 11 YRVYEKepglkgalKGLFR--REYREVEAVDDiSFTiePGEIVGFIGPNGAGKSTTIKMLTGilvptsgevrvlgyvpFK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 75 RdgvtgnikmKRDNACYI-------TQ---DdhhqtlLTVEELMNLacdLKL-----KNRHKKA-EIMTDILEnlhLNHR 138
Cdd:COG4586 89 R---------RKEFARRIgvvfgqrSQlwwD------LPAIDSFRL---LKAiyripDAEYKKRlDELVELLD---LGEL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 139 RNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDeVTAAQCIR-LLQAM-AYEGRTIVCTIHqpsatiynYFDSI 216
Cdd:COG4586 148 LDTPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLD-VVSKEAIReFLKEYnRERGTTILLTSH--------DMDDI 218
|
250 260
....*....|....*....|
gi 24662800 217 Y-------VLAKGQCVYQGS 229
Cdd:COG4586 219 EalcdrviVIDHGRIIYDGS 238
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
1-229 |
1.07e-07 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 55.02 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 1 MEQSQN---LLAKQSK-NVEFQDVYYTVKERknfwrvtgERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrD 76
Cdd:PRK11176 324 LEQEKDegkRVIERAKgDIEFRNVTFTYPGK--------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-D 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 77 GVTGNIKMK------------RDNACYITQDDHhqtLL--TVEELMNLACdlklKNRHKKAEIM--------TDILENLH 134
Cdd:PRK11176 395 IDEGEILLDghdlrdytlaslRNQVALVSQNVH---LFndTIANNIAYAR----TEQYSREQIEeaarmayaMDFINKMD 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 135 lNHRRNVTAEK---LSGGERKRLSIALELVDNPNIFFLDEPTSGLDevTAAQciRLLQAMAYE---GRTIVCTIHQPSaT 208
Cdd:PRK11176 468 -NGLDTVIGENgvlLSGGQRQRIAIARALLRDSPILILDEATSALD--TESE--RAIQAALDElqkNRTSLVIAHRLS-T 541
|
250 260
....*....|....*....|.
gi 24662800 209 IYNYfDSIYVLAKGQCVYQGS 229
Cdd:PRK11176 542 IEKA-DEILVVEDGEIVERGT 561
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
35-234 |
1.26e-07 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 53.76 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--------------------------RRDGVTGNIKMkrdn 88
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGItkdnwhvtadrfrwngidllklspreRRKIIGREIAM---- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 89 acyITQD-----DHHQTLLtvEELMNLACDLKLKNR--HKKAEIMTDILENLHL----NHRR--NVTAEKLSGGERKRLS 155
Cdd:COG4170 94 ---IFQEpssclDPSAKIG--DQLIEAIPSWTFKGKwwQRFKWRKKRAIELLHRvgikDHKDimNSYPHELTEGECQKVM 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 156 IALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGsPRATI 234
Cdd:COG4170 169 IAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESG-PTEQI 246
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
41-266 |
2.07e-07 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 53.19 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 41 NGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF-RRDGVTG-----------NI------KMKRDNACYITQDDhhQTLL 102
Cdd:PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLlAANGRIGgsatfngreilNLpekelnKLRAEQISMIFQDP--MTSL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TV-----EELMNLacdLKLKNRHKKAEI------MTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDE 171
Cdd:PRK09473 111 NPymrvgEQLMEV---LMLHKGMSKAEAfeesvrMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 172 PTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRATIpflrlaqldcprhYSPS 251
Cdd:PRK09473 188 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF-------------YQPS 254
|
250 260
....*....|....*....|..
gi 24662800 252 D-YIIEL------VDAEDGHLV 266
Cdd:PRK09473 255 HpYSIGLlnavprLDAEGESLL 276
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-229 |
2.11e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 53.94 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 2 EQSQNLLakqskNVEFQDVYYTVKeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSS-------LLNAISGFR 74
Cdd:PRK15134 270 EPASPLL-----DVEQLQVAFPIR-KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglallrLINSQGEIW 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 75 RDGVT-GNIKMK-----RDNACYITQDDHH--QTLLTVEELM--NLACDLKLKNRHKKAEIMTDILENLHLN--HRRNVT 142
Cdd:PRK15134 344 FDGQPlHNLNRRqllpvRHRIQVVFQDPNSslNPRLNVLQIIeeGLRVHQPTLSAAQREQQVIAVMEEVGLDpeTRHRYP 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 143 AEkLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKG 222
Cdd:PRK15134 424 AE-FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502
|
....*..
gi 24662800 223 QCVYQGS 229
Cdd:PRK15134 503 EVVEQGD 509
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
38-229 |
2.72e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 53.52 E-value: 2.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 38 RILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNACYITQDDHHQ-------------TLLTV 104
Cdd:PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAHQlgiylvpqepllfPNLSV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EElmNLAcdLKLKNRHKKAEIMTDILENL--HLNhrRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAA 182
Cdd:PRK15439 104 KE--NIL--FGLPKRQASMQKMKQLLAALgcQLD--LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 24662800 183 QCIRLLQAMAYEGRTIVCTIHQPSaTIYNYFDSIYVLAKGQCVYQGS 229
Cdd:PRK15439 178 RLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGK 223
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
44-186 |
3.21e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 53.25 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 44 SGSFRNGQLSAIMGPSGAGKSSLLNAISG-FRRDgvTGNIKMKRDNAC---YITQDDHhqtlLTVEELmnlacdlkLKNR 119
Cdd:COG1245 360 GGEIREGEVLGIVGPNGIGKTTFAKILAGvLKPD--EGEVDEDLKISYkpqYISPDYD----GTVEEF--------LRSA 425
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 120 HKKA----EIMTDILENLHLNH--RRNVtaEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD---EVTAAQCIR 186
Cdd:COG1245 426 NTDDfgssYYKTEIIKPLGLEKllDKNV--KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDveqRLAVAKAIR 499
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
38-228 |
3.25e-07 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 53.25 E-value: 3.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 38 RILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRrDGVTGNIKMKrdNACYiTQDDH-----------HQTL----- 101
Cdd:PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGTITIN--NINY-NKLDHklaaqlgigiiYQELsvide 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 102 LTVEELMNLA-------CDLKL---KNRHKKAEIMTDILeNLHLNhrRNVTAEKLSGGERKRLSIALELVDNPNIFFLDE 171
Cdd:PRK09700 95 LTVLENLYIGrhltkkvCGVNIidwREMRVRAAMMLLRV-GLKVD--LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 172 PTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQpSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:PRK09700 172 PTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSG 227
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
39-204 |
3.44e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 51.10 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDNA-----------CYITQDDHHQTLLTVEEl 107
Cdd:PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIkkdlctyqkqlCFVGHRSGINPYLTLRE- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 mnlACDLKLKNRHKKAEImTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRL 187
Cdd:PRK13540 94 ---NCLYDIHFSPGAVGI-TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK 169
|
170
....*....|....*..
gi 24662800 188 LQAMAYEGRTIVCTIHQ 204
Cdd:PRK13540 170 IQEHRAKGGAVLLTSHQ 186
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
53-177 |
3.55e-07 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 52.57 E-value: 3.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 53 SAIMGPSGAGKSSLLNAISGfrrdgvtgnikMKRDNACYITQDDHhqTLLTVEELMNLACD------------------- 113
Cdd:PRK11144 27 TAIFGRSGAGKTSLINAISG-----------LTRPQKGRIVLNGR--VLFDAEKGICLPPEkrrigyvfqdarlfphykv 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 114 ---LKLKNRHKKAEIMTDILENL---HLNHRRNVTaekLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK11144 94 rgnLRYGMAKSMVAQFDKIVALLgiePLLDRYPGS---LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
26-177 |
3.73e-07 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 52.41 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 26 ERKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--------DG--VTGNIKMKRDnACYITQD 95
Cdd:PRK11432 8 VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKptegqifiDGedVTHRSIQQRD-ICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 DHHQTLLTVEElmNLACDLKLKNRhKKAEIMTDILENLHLN-----HRRNVtaEKLSGGERKRLSIALELVDNPNIFFLD 170
Cdd:PRK11432 87 YALFPHMSLGE--NVGYGLKMLGV-PKEERKQRVKEALELVdlagfEDRYV--DQISGGQQQRVALARALILKPKVLLFD 161
|
....*..
gi 24662800 171 EPTSGLD 177
Cdd:PRK11432 162 EPLSNLD 168
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
36-203 |
4.32e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 52.01 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSL---LNAISgfrrDGVTGNIKmkrdnacYITQDDHHQTLLTVEELMNLAC 112
Cdd:PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFiehLNALL----LPDTGTIE-------WIFKDEKNKKKTKEKEKVLEKL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 113 DLKlKNRHKKAEIMTDIlenlhlnhRRNV--------------TAEK--------------------------------- 145
Cdd:PRK13651 88 VIQ-KTRFKKIKKIKEI--------RRRVgvvfqfaeyqlfeqTIEKdiifgpvsmgvskeeakkraakyielvgldesy 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 146 -------LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH 203
Cdd:PRK13651 159 lqrspfeLSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
48-199 |
5.19e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.50 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 48 RNGQLSAIMGPSGAGKSSLLNAISG---------------------FR--------RDGVTGNIKMKRDNAcYITQddhh 98
Cdd:PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGelipnlgdyeeepswdevlkrFRgtelqnyfKKLYNGEIKVVHKPQ-YVDL---- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 qtlL------TVEELmnlacdLKLKNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEP 172
Cdd:PRK13409 172 ---IpkvfkgKVREL------LKKVDERGKLD---EVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|
gi 24662800 173 TSGLD---EVTAAQCIRLLQamayEGRTIV 199
Cdd:PRK13409 240 TSYLDirqRLNVARLIRELA----EGKYVL 265
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
146-203 |
5.79e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 52.91 E-value: 5.79e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 146 LSGGERKRLSIALEL---VDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH 203
Cdd:PRK00635 810 LSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
31-223 |
5.98e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 52.52 E-value: 5.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 31 WRVTGERRI-LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVTGNIKMK-------------RDNACYITQDD 96
Cdd:TIGR02633 266 WDVINPHRKrVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINgkpvdirnpaqaiRAGIAMVPEDR 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 HHQTL---LTVEELMNLA-----CDLKLKNRHKKAEIMTDILENLHLNHRR-NVTAEKLSGGERKRLSIALELVDNPNIF 167
Cdd:TIGR02633 346 KRHGIvpiLGVGKNITLSvlksfCFKMRIDAAAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQQKAVLAKMLLTNPRVL 425
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVcTIHQPSATIYNYFDSIYVLAKGQ 223
Cdd:TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQEGVAII-VVSSELAEVLGLSDRVLVIGEGK 480
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
48-199 |
6.62e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 52.48 E-value: 6.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 48 RNGQLSAIMGPSGAGKSSLLNAISG---------------------FR--------RDGVTGNIK--MKRDNACYITQdd 96
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGelkpnlgdydeepswdevlkrFRgtelqdyfKKLANGEIKvaHKPQYVDLIPK-- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 hhQTLLTVEELmnlacdLKLKNRHKKAEimtDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGL 176
Cdd:COG1245 175 --VFKGTVREL------LEKVDERGKLD---ELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYL 243
|
170 180
....*....|....*....|....*.
gi 24662800 177 D---EVTAAqciRLLQAMAYEGRTIV 199
Cdd:COG1245 244 DiyqRLNVA---RLIRELAEEGKYVL 266
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
31-204 |
6.80e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 52.67 E-value: 6.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 31 WRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVTGNIKMkRDNACYITQDDHHQTLlTVEELMNL 110
Cdd:PLN03232 624 WDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVI-RGSVAYVPQVSWIFNA-TVRENILF 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 111 ACDLKlKNRHKKAEIMTDILENLHLNHRRNVT--AEK---LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI 185
Cdd:PLN03232 702 GSDFE-SERYWRAIDVTALQHDLDLLPGRDLTeiGERgvnISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
|
170
....*....|....*....
gi 24662800 186 RLLQAMAYEGRTIVCTIHQ 204
Cdd:PLN03232 781 DSCMKDELKGKTRVLVTNQ 799
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
143-220 |
8.81e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 52.34 E-value: 8.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 143 AEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD---EVTAAQCIRLLQamAYEGRTIVCTIHQPSaTIyNYFDSIYVL 219
Cdd:PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDnksEYLVQKTINNLK--GNENRITIIIAHRLS-TI-RYANTIFVL 652
|
.
gi 24662800 220 A 220
Cdd:PTZ00265 653 S 653
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
44-186 |
9.26e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 51.73 E-value: 9.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 44 SGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDGVTGNIKMKRDNAC---YITQDdhhqTLLTVEELMNLACDlKLKNRH 120
Cdd:PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAG-VLKPDEGEVDPELKISYkpqYIKPD----YDGTVEDLLRSITD-DLGSSY 432
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662800 121 KKAEIM-----TDILEnlhlnhrRNVTaeKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD---EVTAAQCIR 186
Cdd:PRK13409 433 YKSEIIkplqlERLLD-------KNVK--DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDveqRLAVAKAIR 497
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
44-230 |
1.11e-06 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 51.19 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 44 SGSFRNGQLSAIMGPSGAGKSS---LLNAISGFRR-----DGV-TGNI------KMKRDNACYITQDDHHQTLLTVEELM 108
Cdd:PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTmvrLLNRLIEPTRgqvliDGVdIAKIsdaelrEVRRKKIAMVFQSFALMPHMTVLDNT 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 109 NLACDLKLKNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCI-RL 187
Cdd:PRK10070 128 AFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQdEL 207
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24662800 188 LQAMAYEGRTIVCTIHQPSATIyNYFDSIYVLAKGQCVYQGSP 230
Cdd:PRK10070 208 VKLQAKHQRTIVFISHDLDEAM-RIGDRIAIMQNGEVVQVGTP 249
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-229 |
1.16e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.78 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 4 SQNLLAKQSKNVEFQDVYYTVKERKNfwrvtgerrilngVSGSFRNGQLSAIMGPSGAGKS----SLLNAISGFRRDGVT 79
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRN-------------LSFSLQRGETLAIVGESGSGKSvtalALMRLLEQAGGLVQC 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 GNIKMKRDNACYITQDDHHQT-----------------------LLTVEElmNLACDLKLKNRHKKAEIMTD---ILENL 133
Cdd:PRK10261 76 DKMLLRRRSRQVIELSEQSAAqmrhvrgadmamifqepmtslnpVFTVGE--QIAESIRLHQGASREEAMVEakrMLDQV 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 134 HLNHRRNVTAE---KLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIY 210
Cdd:PRK10261 154 RIPEAQTILSRyphQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVA 233
|
250
....*....|....*....
gi 24662800 211 NYFDSIYVLAKGQCVYQGS 229
Cdd:PRK10261 234 EIADRVLVMYQGEAVETGS 252
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
35-197 |
1.29e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 51.17 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfrrdgvtgnikmkrdnacyitqdDHHQtlltveelmNLACDL 114
Cdd:PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-----------------------DHPQ---------GYSNDL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 115 KLKNRHK-KAEIMTDILEN-------LHLNHR-----RNV-----------------------------------TAEK- 145
Cdd:PRK10938 319 TLFGRRRgSGETIWDIKKHigyvsssLHLDYRvstsvRNVilsgffdsigiyqavsdrqqklaqqwldilgidkrTADAp 398
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 146 ---LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRT 197
Cdd:PRK10938 399 fhsLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGET 453
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
15-246 |
1.56e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 50.09 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKERKNfwrvTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSL---LNAI----SG-FRRDGV----TGNI 82
Cdd:PRK13633 5 IKCKNVSYKYESNEE----STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIakhMNALlipsEGkVYVDGLdtsdEENL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 83 KMKRDNACYITQDDHHQTLLT-VEELM-----NLACDLKlknrhkkaEIMT---DILENLHLNHRRNVTAEKLSGGERKR 153
Cdd:PRK13633 81 WDIRNKAGMVFQNPDNQIVATiVEEDVafgpeNLGIPPE--------EIRErvdESLKKVGMYEYRRHAPHLLSGGQKQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 154 LSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE-GRTIVCTIHQPSATIYNyfDSIYVLAKGQCVYQGSPRA 232
Cdd:PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHYMEEAVEA--DRIIVMDSGKVVMEGTPKE 230
|
250
....*....|....*..
gi 24662800 233 TIPFLRLAQ---LDCPR 246
Cdd:PRK13633 231 IFKEVEMMKkigLDVPQ 247
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
50-234 |
1.61e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.78 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAISGfrrdgvtGNIKMKRDNACyitqDDHHQTLLTVEELMNLACDLKLKNRH--------- 120
Cdd:PRK10938 29 GDSWAFVGANGSGKSALARALAG-------ELPLLSGERQS----QFSHITRLSFEQLQKLVSDEWQRNNTdmlspgedd 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 121 ---KKAEImtdILENLHLNHRRNVTAEK-------------LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQC 184
Cdd:PRK10938 98 tgrTTAEI---IQDEVKDPARCEQLAQQfgitalldrrfkyLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 185 IRLLQAMAYEGRTIVctihqpsaTIYNYFDSI-------YVLAKGQCVYQGsPRATI 234
Cdd:PRK10938 175 AELLASLHQSGITLV--------LVLNRFDEIpdfvqfaGVLADCTLAETG-EREEI 222
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
21-247 |
1.64e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 50.35 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 21 YYTVKerKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSL---LNAI----SG-FRRDG--VTGN----IKMKR 86
Cdd:PRK11308 14 HYPVK--RGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLarlLTMIetptGGeLYYQGqdLLKAdpeaQKLLR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DNACYITQDDH---------HQTLltvEELMNLACDLKLKNRHKKA-EIMTDI-LENLHLN---HRrnvtaekLSGGERK 152
Cdd:PRK11308 92 QKIQIVFQNPYgslnprkkvGQIL---EEPLLINTSLSAAERREKAlAMMAKVgLRPEHYDrypHM-------FSGGQRQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 153 RLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGsPRA 232
Cdd:PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG-TKE 240
|
250
....*....|....*
gi 24662800 233 TIpFLRlaqldcPRH 247
Cdd:PRK11308 241 QI-FNN------PRH 248
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
29-197 |
2.23e-06 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 49.69 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 29 NFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSL---------------------LNAISG-----FRRDgvtgnI 82
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLarllvglespsqgnvswrgepLAKLNRaqrkaFRRD-----I 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 83 KMkrdnacyITQDD------HHQTLLTVEELMNLACDLKLKNRHKKAEIMTDILEnLHLNHRRNVTAEkLSGGERKRLSI 156
Cdd:PRK10419 92 QM-------VFQDSisavnpRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD-LDDSVLDKRPPQ-LSGGQLQRVCL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 24662800 157 ALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRT 197
Cdd:PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
37-201 |
2.43e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 49.71 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 37 RRILNGVSGSFRNGQLSAIMGPSGAGKSSLL-------NAISGFRRDG--VTG--------NIKMKRDNACYITQDDHHQ 99
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLrtlnrmnDKVSGYRYSGdvLLGgrsifnyrDVLEFRRRVGMLFQRPNPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 100 TLLTVEELMNLACDLKLKNRHKKAEIMTDILENLHL----NHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:PRK14271 114 PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193
|
170 180
....*....|....*....|....*.
gi 24662800 176 LDEVTAAQCIRLLQAMAYEGRTIVCT 201
Cdd:PRK14271 194 LDPTTTEKIEEFIRSLADRLTVIIVT 219
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
40-206 |
2.87e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 50.27 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfrrdgVT----GNIKMKRDNACYITQDDHHQTLLTVE--ELMNLACD 113
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG-----VTmpnkGTVDIKGSAALIAISSGLNGQLTGIEniELKGLMMG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 114 LKlknRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAY 193
Cdd:PRK13545 115 LT---KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE 191
|
170
....*....|...
gi 24662800 194 EGRTIVCTIHQPS 206
Cdd:PRK13545 192 QGKTIFFISHSLS 204
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
39-229 |
3.09e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 50.68 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG--------FRRDG-----------VTGNIKmkrDNACY-ITQDDHH 98
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGelepsegkIKHSGrisfspqtswiMPGTIK---DNIIFgLSYDEYR 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 99 QTllTVEELMNLACDLKLKNRHKKAEIMTDilenlhlnhrrNVTaekLSGGERKRLSIALELVDNPNIFFLDEPTSGLDE 178
Cdd:TIGR01271 518 YT--SVIKACQLEEDIALFPEKDKTVLGEG-----------GIT---LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 179 VTAAQCIR--LLQAMAYEGRTIVCTI--HQPSAtiynyfDSIYVLAKGQCVYQGS 229
Cdd:TIGR01271 582 VTEKEIFEscLCKLMSNKTRILVTSKleHLKKA------DKILLLHEGVCYFYGT 630
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
40-177 |
4.69e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 49.62 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG--------FRRDGVTGNIKMKRD----NACYITQDDHHQTL---LTV 104
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGalprtsgyVTLDGHEVVTRSPQDglanGIVYISEDRKRDGLvlgMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EELMNLACDLKLKNR----HKKAEIMT--DILENLHLNH-RRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK10762 348 KENMSLTALRYFSRAggslKHADEQQAvsDFIRLFNIKTpSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
36-243 |
4.96e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 48.57 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSS-------LLNAISG-FRRDG---VTGNIKMKRDNACYITQDDHHQTL-LT 103
Cdd:PRK13650 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTtvrlidgLLEAESGqIIIDGdllTEENVWDIRHKIGMVFQNPDNQFVgAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 104 VEE-----LMNLACDLK-LKNRHKKAeimtdiLENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK13650 99 VEDdvafgLENKGIPHEeMKERVNEA------LELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 178 EVTAAQCIRLLQAMAYE-GRTIVCTIHQPSATIYNyfDSIYVLAKGQCVYQGSPRATipFLRLAQLD 243
Cdd:PRK13650 173 PEGRLELIKTIKGIRDDyQMTVISITHDLDEVALS--DRVLVMKNGQVESTSTPREL--FSRGNDLL 235
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
43-234 |
5.05e-06 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 49.03 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 43 VSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDG--VTGNiKMKRD------------------NACYITQDDhhQTLL 102
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrVTAD-RMRFDdidllrlsprerrklvghNVSMIFQEP--QSCL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 103 TVEE-----LMNLACDLKLKN--------RHKKAeimtdilenLHLNHRRNVTAEK---------LSGGERKRLSIALEL 160
Cdd:PRK15093 103 DPSErvgrqLMQNIPGWTYKGrwwqrfgwRKRRA---------IELLHRVGIKDHKdamrsfpyeLTEGECQKVMIAIAL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24662800 161 VDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRATI 234
Cdd:PRK15093 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
20-194 |
5.19e-06 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 48.93 E-value: 5.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 20 VYYTVKERKN-FWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRdGVTGNI--------KM------ 84
Cdd:PRK15079 16 VHFDIKDGKQwFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVawlgkdllGMkddewr 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 85 -KRDNACYITQDdhhqTLLTVEELMNLAcDL---KLKNRH---KKAEIMTDI---------LENLhlnhrRNVTAEKLSG 148
Cdd:PRK15079 95 aVRSDIQMIFQD----PLASLNPRMTIG-EIiaePLRTYHpklSRQEVKDRVkammlkvglLPNL-----INRYPHEFSG 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24662800 149 GERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYE 194
Cdd:PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
50-209 |
5.26e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.60 E-value: 5.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAISGFrrdgvtgnIKMKRDNACYITqddhhqtlltveelmnlacdlklknrhkkAEIMTDI 129
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARE--------LGPPGGGVIYID-----------------------------GEDILEE 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 130 LENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQ------CIRLLQAMAYEGRTIVCTIH 203
Cdd:smart00382 45 VLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALlllleeLRLLLLLKSEKNLTVILTTN 124
|
....*.
gi 24662800 204 QPSATI 209
Cdd:smart00382 125 DEKDLG 130
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
15-230 |
6.78e-06 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 48.09 E-value: 6.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDVYYTVKErknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--DGV--TGNIKMKRDNAC 90
Cdd:PRK13635 6 IRVEHISFRYPD--------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLpeAGTitVGGMVLSEETVW 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 91 YIT-------QDDHHQTL-LTVEELMNLAcdlkLKN----RHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIAL 158
Cdd:PRK13635 78 DVRrqvgmvfQNPDNQFVgATVQDDVAFG----LENigvpREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 159 ELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTI-HQ----PSAtiynyfDSIYVLAKGQCVYQGSP 230
Cdd:PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSItHDldeaAQA------DRVIVMNKGEILEEGTP 224
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
15-238 |
9.14e-06 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 47.38 E-value: 9.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 15 VEFQDV----------YYTVKERKNFWRVT--GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISgfrrdGVT--- 79
Cdd:COG1134 5 IEVENVsksyrlyhepSRSLKELLLRRRRTrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIA-----GILept 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 -GNIKMKrdnaCYIT---------QDDhhqtlLTVEE-------LMNLacdlklkNRHKKAEIMTDILEnlhlnhrrnvT 142
Cdd:COG1134 80 sGRVEVN----GRVSallelgagfHPE-----LTGREniylngrLLGL-------SRKEIDEKFDEIVE----------F 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 143 AE----------KLSGGERKRL--SIALELvdNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPsATIY 210
Cdd:COG1134 134 AElgdfidqpvkTYSSGMRARLafAVATAV--DPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSM-GAVR 210
|
250 260
....*....|....*....|....*...
gi 24662800 211 NYFDSIYVLAKGQCVYQGSPRATIPFLR 238
Cdd:COG1134 211 RLCDRAIWLEKGRLVMDGDPEEVIAAYE 238
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
76-203 |
1.51e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.09 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 76 DGVTgNIKMKRDNACYITQDDHH------QTL--------------LTVEELMNLAcdLKLKNRHKKAEIMTDI-LENLH 134
Cdd:TIGR00630 746 DGVI-KIEMHFLPDVYVPCEVCKgkrynrETLevkykgkniadvldMTVEEAYEFF--EAVPSISRKLQTLCDVgLGYIR 822
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 135 LNhrRNVTAekLSGGERKRLSIALEL---VDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIH 203
Cdd:TIGR00630 823 LG--QPATT--LSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
23-199 |
1.52e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 48.00 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 23 TVKERKNF--WRVTG-ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVTGNIKMK-------------R 86
Cdd:PRK13549 258 VILEVRNLtaWDPVNpHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDgkpvkirnpqqaiA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DNACYITQDDHHQ---TLLTVEELMNLA-----CDLKLKNRHKKAEIMTDILENLHLnhrRNVTAE----KLSGGERKRL 154
Cdd:PRK13549 338 QGIAMVPEDRKRDgivPVMGVGKNITLAaldrfTGGSRIDDAAELKTILESIQRLKV---KTASPElaiaRLSGGNQQKA 414
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 24662800 155 SIALELVDNPNIFFLDEPTSGLDeVTAAQCI-RLLQAMAYEGRTIV 199
Cdd:PRK13549 415 VLAKCLLLNPKILILDEPTRGID-VGAKYEIyKLINQLVQQGVAII 459
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
16-195 |
1.71e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 48.02 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 16 EFQDVYYTVkerknfwrvtGERRILNGVSGSFRNGQLSAIMGPSGAGKSSL-------LNAISGFRRDGVtgnikmKRDN 88
Cdd:PRK11147 321 EMENVNYQI----------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLlklmlgqLQADSGRIHCGT------KLEV 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 89 ACYitqdDHHQTLL----TVEElmNLAcdlklknrHKKAEIMTD-----ILENLH--LNH-RRNVTAEK-LSGGERKRLS 155
Cdd:PRK11147 385 AYF----DQHRAELdpekTVMD--NLA--------EGKQEVMVNgrprhVLGYLQdfLFHpKRAMTPVKaLSGGERNRLL 450
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 24662800 156 IALELVDNPNIFFLDEPTSGLDEVTaaqcIRLLQAM--AYEG 195
Cdd:PRK11147 451 LARLFLKPSNLLILDEPTNDLDVET----LELLEELldSYQG 488
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
146-229 |
1.79e-05 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 47.79 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 146 LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTaAQCIRLLQAMAYEGRTIVCTIHQPSaTIYNYfDSIYVLAKGQCV 225
Cdd:PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGT-EQAIQQALAAVREHTTLVVIAHRLS-TIVEA-DTILVLHRGQAV 553
|
....
gi 24662800 226 YQGS 229
Cdd:PRK10790 554 EQGT 557
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
40-199 |
1.96e-05 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 47.33 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR-DGvtGNIKMKrDNACYIT--QD--DH-----HQ--TL---LTV 104
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQpDS--GEILID-GKPVRIRspRDaiALgigmvHQhfMLvpnLTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 EElmNLAC-----DLKLKNRHKKAEIMTDILENLHLN---HRRnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGL 176
Cdd:COG3845 98 AE--NIVLgleptKGGRLDRKAARARIRELSERYGLDvdpDAK---VEDLSVGEQQRVEILKALYRGARILILDEPTAVL 172
|
170 180
....*....|....*....|...
gi 24662800 177 DEVTAAQCIRLLQAMAYEGRTIV 199
Cdd:COG3845 173 TPQEADELFEILRRLAAEGKSII 195
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
50-72 |
2.18e-05 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 45.85 E-value: 2.18e-05
10 20
....*....|....*....|...
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAISG 72
Cdd:cd01854 85 GKTSVLVGQSGVGKSTLLNALLP 107
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
35-177 |
2.23e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 47.81 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR--DG-VT---GNIKMK--RDNAC--------------YI 92
Cdd:NF033858 12 GKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKiqQGrVEvlgGDMADArhRRAVCpriaympqglgknlYP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 93 TqddhhqtlLTVEElmNLACDLKL--KNRHKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLD 170
Cdd:NF033858 92 T--------LSVFE--NLDFFGRLfgQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILD 161
|
....*..
gi 24662800 171 EPTSGLD 177
Cdd:NF033858 162 EPTTGVD 168
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
39-258 |
2.40e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 47.66 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAIsgFRRDGV-TGNIKMkrdNACYITQ---DDHHQTLLTVEE---LMNLA 111
Cdd:PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL--FRIVELeKGRIMI---DDCDVAKfglTDLRRVLSIIPQspvLFSGT 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 112 CDLKLK--NRHKKAeimtDILENLHLNHRRNVT--------------AEKLSGGERKRLSIALELVDNPNIFFLDEPTSG 175
Cdd:PLN03232 1326 VRFNIDpfSEHNDA----DLWEALERAHIKDVIdrnpfgldaevsegGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 176 LDEVTAAQCIRLLQAmAYEGRTIVCTIHQPSATIynYFDSIYVLAKGQCVYQGSP-----RATIPFLRLAQLDCPRHysp 250
Cdd:PLN03232 1402 VDVRTDSLIQRTIRE-EFKSCTMLVIAHRLNTII--DCDKILVLSSGQVLEYDSPqellsRDTSAFFRMVHSTGPAN--- 1475
|
....*...
gi 24662800 251 SDYIIELV 258
Cdd:PLN03232 1476 AQYLSNLV 1483
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
23-199 |
2.47e-05 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 47.09 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 23 TVKERKNfwrVTG-ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGF--RRDG--VTGNIKMK--------RDNA 89
Cdd:PRK09700 264 TVFEVRN---VTSrDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVdkRAGGeiRLNGKDISprspldavKKGM 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 90 CYITQDDHHQTLL---TVEELMNLACDLK---------LKNRHKKAEIMTDILENLHLN-HRRNVTAEKLSGGERKRLSI 156
Cdd:PRK09700 341 AYITESRRDNGFFpnfSIAQNMAISRSLKdggykgamgLFHEVDEQRTAENQRELLALKcHSVNQNITELSGGNQQKVLI 420
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 24662800 157 ALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIV 199
Cdd:PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
5-177 |
2.65e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 47.24 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 5 QNLLAKQS-KNVEFQDVYYTVKER--------KNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRR 75
Cdd:TIGR03719 294 EELLSQEFqKRNETAEIYIPPGPRlgdkvieaENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 76 DGvTGNIKMKRD-NACYITQ-----DDHHqtllTVEElmnlacdlklknrhkkaEIM--TDILE--NLHLNHRRNVTA-- 143
Cdd:TIGR03719 374 PD-SGTIEIGETvKLAYVDQsrdalDPNK----TVWE-----------------EISggLDIIKlgKREIPSRAYVGRfn 431
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 24662800 144 ------EK----LSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:TIGR03719 432 fkgsdqQKkvgqLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
138-247 |
2.91e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 46.66 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 138 RRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIY 217
Cdd:PRK11022 146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII 225
|
90 100 110
....*....|....*....|....*....|
gi 24662800 218 VLAKGQCVYQGspRATIPFlrlaqlDCPRH 247
Cdd:PRK11022 226 VMYAGQVVETG--KAHDIF------RAPRH 247
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
18-203 |
3.04e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 47.04 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 18 QDVYYTVKERKnfwRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG---------FRRDGVT--------- 79
Cdd:PRK11819 4 QYIYTMNRVSK---VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGvdkefegeaRPAPGIKvgylpqepq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 80 --------GNI---------KMKRDN---ACYITQDDHHQTLLT----VEELMNlACDL-KLKNrhkKAEIMTDILenlh 134
Cdd:PRK11819 81 ldpektvrENVeegvaevkaALDRFNeiyAAYAEPDADFDALAAeqgeLQEIID-AADAwDLDS---QLEIAMDAL---- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 135 lnhrR------NVTaeKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQamAYEGrTIVCTIH 203
Cdd:PRK11819 153 ----RcppwdaKVT--KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH--DYPG-TVVAVTH 218
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
28-192 |
3.59e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 45.00 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 28 KNFWRVTGERRIlngvsgSFRNGqLSAIMGPSGAGKSSLLNAI------SGFRRDGVTGNIKMKRDNACYIT----QDDH 97
Cdd:COG0419 8 ENFRSYRDTETI------DFDDG-LNLIVGPNGAGKSTILEAIryalygKARSRSKLRSDLINVGSEEASVElefeHGGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 H-------------------------QTLLTVEELMNLACDLK-----LKNRHKKAEIMTDILENLHLNHRRNVTAEKLS 147
Cdd:COG0419 81 RyrierrqgefaefleakpserkealKRLLGLEIYEELKERLKeleeaLESALEELAELQKLKQEILAQLSGLDPIETLS 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 24662800 148 GGERKRLSIAlELVDnpniFFLDepTSGLDEVTAAQCIRLLQAMA 192
Cdd:COG0419 161 GGERLRLALA-DLLS----LILD--FGSLDEERLERLLDALEELA 198
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
47-178 |
5.36e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 44.52 E-value: 5.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 47 FRNGqLSAIMGPSGAGKSSLLNAIsgfrRDGVTGNIKMKRDnacyitQDDHHQTLLTVEElmNLA-CDLKLKNRHKKAEI 125
Cdd:cd03240 20 FFSP-LTLIVGQNGAGKTTIIEAL----KYALTGELPPNSK------GGAHDPKLIREGE--VRAqVKLAFENANGKKYT 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24662800 126 MT---DILENLHLNHRRNV------TAEKLSGGERKRLSIALELV------DNPNIFFLDEPTSGLDE 178
Cdd:cd03240 87 ITrslAILENVIFCHQGESnwplldMRGRCSGGEKVLASLIIRLAlaetfgSNCGILALDEPTTNLDE 154
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
32-205 |
5.59e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 44.94 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 32 RVTGER-RILNGVSGSFRNGQLSAIMGPSGAGKSSL-------------LNAISGFRR-----------DGVTG-----N 81
Cdd:cd03270 2 IVRGAReHNLKNVDVDIPRNKLVVITGVSGSGKSSLafdtiyaegqrryVESLSAYARqflgqmdkpdvDSIEGlspaiA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 82 IKMKRdnacyiTQDDHHQTLLTVEELMNLACDL----KLKNRhkkAEIMTDI-LENLHLNHrrnvTAEKLSGGERKRLSI 156
Cdd:cd03270 82 IDQKT------TSRNPRSTVGTVTEIYDYLRLLfarvGIRER---LGFLVDVgLGYLTLSR----SAPTLSGGEAQRIRL 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 24662800 157 ALELVDNPN--IFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQP 205
Cdd:cd03270 149 ATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
60-199 |
5.88e-05 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 45.78 E-value: 5.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 60 GAGKSSLLNAISGFRRdGVTGNIKMK------RDNA-------CYITQDDHHQTL---LTVEELMNLA-----CDLKLKN 118
Cdd:COG1129 288 GAGRTELARALFGADP-ADSGEIRLDgkpvriRSPRdairagiAYVPEDRKGEGLvldLSIRENITLAsldrlSRGGLLD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 119 RHKKAEIMTDILENLHLN-HRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDeVTA-AQCIRLLQAMAYEGR 196
Cdd:COG1129 367 RRRERALAEEYIKRLRIKtPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGID-VGAkAEIYRLIRELAAEGK 445
|
...
gi 24662800 197 TIV 199
Cdd:COG1129 446 AVI 448
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
145-188 |
5.89e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.10 E-value: 5.89e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 24662800 145 KLSGGERKRLSIALELVDNPNIFFLDEPTSGLD---EVTAAQCIRLL 188
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDieqRLNAARAIRRL 117
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-180 |
6.05e-05 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 45.95 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 1 MEQSQNLlaKQSKNVEFQDVYYTVKE-RKNFWRVT-GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG------ 72
Cdd:TIGR03269 261 MEGVSEV--EKECEVEVGEPIIKVRNvSKRYISVDrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGvlepts 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 73 ----FR---------RDGVTGNIKMKRdnacYITQDDHHQTLL---TVEELMNLACDLKLKNR----------------H 120
Cdd:TIGR03269 339 gevnVRvgdewvdmtKPGPDGRGRAKR----YIGILHQEYDLYphrTVLDNLTEAIGLELPDElarmkavitlkmvgfdE 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 121 KKAEimtDILENLhlnhrrnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVT 180
Cdd:TIGR03269 415 EKAE---EILDKY---------PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
35-177 |
6.74e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.93 E-value: 6.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 35 GERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG----FRRD-GVTGNIKMKrdnacYITQddHHQTLLTVEE--L 107
Cdd:PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGelapVSGEiGLAKGIKLG-----YFAQ--HQLEFLRADEspL 395
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24662800 108 MNLAcdlKLKNRHKKAEiMTDILENLHLNHRRnVT--AEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK10636 396 QHLA---RLAPQELEQK-LRDYLGGFGFQGDK-VTeeTRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
51-203 |
7.58e-05 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 44.77 E-value: 7.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 51 QLSAIMGPSGAGKSSLL-------NAISGFRRDG------------------VTGNIKMK-----------RDNACYITQ 94
Cdd:PRK14243 37 QITAFIGPSGCGKSTILrcfnrlnDLIPGFRVEGkvtfhgknlyapdvdpveVRRRIGMVfqkpnpfpksiYDNIAYGAR 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 95 DDHHQTLLtvEELMNLACdlklknrhKKAEIMTDILENLhlnhrrNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTS 174
Cdd:PRK14243 117 INGYKGDM--DELVERSL--------RQAALWDEVKDKL------KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180
|
170 180
....*....|....*....|....*....
gi 24662800 175 GLDEVTAAQCIRLLQAMAyEGRTIVCTIH 203
Cdd:PRK14243 181 ALDPISTLRIEELMHELK-EQYTIIIVTH 208
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
40-204 |
1.11e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 44.14 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISG-------FRRDGVTGNIKM-----KRDNACYITQDD----------- 96
Cdd:cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYpalarrlHLKKEQPGNHDRiegleHIDKVIVIDQSPigrtprsnpat 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 ---------------------HHQTL------LTVEELMNLACDLKLK------NRHKKAEIMTDI-LENLHLNhrRNVT 142
Cdd:cd03271 91 ytgvfdeirelfcevckgkryNRETLevrykgKSIADVLDMTVEEALEffenipKIARKLQTLCDVgLGYIKLG--QPAT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 143 AekLSGGERKRLSIALEL---VDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQ 204
Cdd:cd03271 169 T--LSGGEAQRIKLAKELskrSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
46-205 |
1.21e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 42.73 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 46 SFRNGQLSAIMGPSGAGKSSLLNAIsgfrrdgvtgnikmkrdnaCYITQDDHHQTLLTVEELMNL--ACDlklknrhkKA 123
Cdd:cd03227 17 TFGEGSLTIITGPNGSGKSTILDAI-------------------GLALGGAQSATRRRSGVKAGCivAAV--------SA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 124 EIMTDILenlhlnhrrnvtaeKLSGGERKRLSIALEL----VDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIV 199
Cdd:cd03227 70 ELIFTRL--------------QLSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
|
....*.
gi 24662800 200 CTIHQP 205
Cdd:cd03227 136 VITHLP 141
|
|
| RsgA_GTPase |
pfam03193 |
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ... |
50-72 |
1.35e-04 |
|
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.
Pssm-ID: 427191 [Multi-domain] Cd Length: 174 Bit Score: 42.91 E-value: 1.35e-04
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
32-192 |
1.66e-04 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 43.53 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 32 RVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT---GNIKMkrDNACYITQDDHHQTLLTVEE-- 106
Cdd:PRK10418 11 ALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRqtaGRVLL--DGKPVAPCALRGRKIATIMQnp 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 107 ------LMNLAC----DLKLKNRHKKAEIMTDILENLHLNHRRNVT---AEKLSGGERKRLSIALELVDNPNIFFLDEPT 173
Cdd:PRK10418 89 rsafnpLHTMHThareTCLALGKPADDATLTAALEAVGLENAARVLklyPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168
|
170
....*....|....*....
gi 24662800 174 SGLDEVTAAQCIRLLQAMA 192
Cdd:PRK10418 169 TDLDVVAQARILDLLESIV 187
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
36-228 |
1.68e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 43.63 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGVT-GNIKMKRDNACYITQDD------------------ 96
Cdd:PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTgGTVEFKGKDLLELSPEDragegifmafqypveipg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 97 --HHQTLLTVEELMNLACDLKLKNRHKKAEIMTDILENLHLNH---RRNVTaEKLSGGERKRLSIALELVDNPNIFFLDE 171
Cdd:PRK09580 93 vsNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEdllTRSVN-VGFSGGEKKRNDILQMAVLEPELCILDE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 172 PTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQG 228
Cdd:PRK09580 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
146-271 |
2.64e-04 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 43.90 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 146 LSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCV 225
Cdd:COG4172 157 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIV 236
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 24662800 226 YQGsPRATIpflrlaqLDCPRHyspsDYIIELVDAEDGHLVPALSD 271
Cdd:COG4172 237 EQG-PTAEL-------FAAPQH----PYTRKLLAAEPRGDPRPVPP 270
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
39-229 |
2.76e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.38 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 39 ILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDGVTGNIKMKRDNAcYITQDD--HHQTL------LTVEELMNL 110
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-QFEISEGRVWAERSIA-YVPQQAwiMNATVrgnilfFDEEDAARL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 111 A-----CDLKLKNRHKKAEIMTDILENlhlnhrrnvtAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD----EVTA 181
Cdd:PTZ00243 753 AdavrvSQLEADLAQLGGGLETEIGEK----------GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDahvgERVV 822
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 24662800 182 AQCIrlLQAMAyeGRTIVCTIHQ----PSAtiynyfDSIYVLAKGQCVYQGS 229
Cdd:PTZ00243 823 EECF--LGALA--GKTRVLATHQvhvvPRA------DYVVALGDGRVEFSGS 864
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
55-177 |
3.18e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 43.79 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 55 IMGPSGAGKSSLLNAISG--FRRDG---VTGNIKMKRdnacyITQD-------------------------DHHQTLLTV 104
Cdd:PRK11147 34 LVGRNGAGKSTLMKILNGevLLDDGriiYEQDLIVAR-----LQQDpprnvegtvydfvaegieeqaeylkRYHDISHLV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 105 E---------ELMNLACDL------KLKNRhkkaeiMTDILENLHLNHRRNVTAekLSGGERKRLSIALELVDNPNIFFL 169
Cdd:PRK11147 109 EtdpseknlnELAKLQEQLdhhnlwQLENR------INEVLAQLGLDPDAALSS--LSGGWLRKAALGRALVSNPDVLLL 180
|
....*...
gi 24662800 170 DEPTSGLD 177
Cdd:PRK11147 181 DEPTNHLD 188
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
40-203 |
3.60e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 42.88 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 40 LNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGfRRDGVTGNIKmKRDNACYITQDDHHQTLLTVEELMNLACDLKLKNR 119
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG-SLSPTVGKVD-RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 120 HKKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIV 199
Cdd:PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIF 197
|
....
gi 24662800 200 CTIH 203
Cdd:PRK13546 198 FVSH 201
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
21-189 |
6.11e-04 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 42.41 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 21 YYTVKeRKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------SG---FRRDGVTG----NIKMKR 86
Cdd:COG4608 16 HFPVR-GGLFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLlrleeptSGeilFDGQDITGlsgrELRPLR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 87 DNACYITQDDHhQTL---LTVEELmnLACDLKLKNRHKKAEIMTDILENL--------HLN---HrrnvtaeKLSGGERK 152
Cdd:COG4608 95 RRMQMVFQDPY-ASLnprMTVGDI--IAEPLRIHGLASKAERRERVAELLelvglrpeHADrypH-------EFSGGQRQ 164
|
170 180 190
....*....|....*....|....*....|....*..
gi 24662800 153 RLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQ 189
Cdd:COG4608 165 RIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLE 201
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
119-177 |
8.77e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 42.71 E-value: 8.77e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24662800 119 RHKKAEIMTDILENLHLNHRRNVT--AEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PTZ00265 1330 RACKFAAIDEFIESLPNKYDTNVGpyGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
30-232 |
9.87e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 42.15 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 30 FWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAI-------------SGFRRDGVT-GNIKMKRDNACYITQD 95
Cdd:PRK10261 330 LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALlrlvesqggeiifNGQRIDTLSpGKLQALRRDIQFIFQD 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 96 -----DHHQTL-LTVEELMNLAcdlKLKNRHKKAEIMTDILENLHL--NHRRNVTAEkLSGGERKRLSIALELVDNPNIF 167
Cdd:PRK10261 410 pyaslDPRQTVgDSIMEPLRVH---GLLPGKAAAARVAWLLERVGLlpEHAWRYPHE-FSGGQRQRICIARALALNPKVI 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24662800 168 FLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPSATIYNYFDSIYVLAKGQCVYQGSPRA 232
Cdd:PRK10261 486 IADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550
|
|
| PRK00098 |
PRK00098 |
GTPase RsgA; Reviewed |
50-72 |
9.94e-04 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234631 [Multi-domain] Cd Length: 298 Bit Score: 41.73 E-value: 9.94e-04
10 20
....*....|....*....|...
gi 24662800 50 GQLSAIMGPSGAGKSSLLNAISG 72
Cdd:PRK00098 164 GKVTVLAGQSGVGKSTLLNALAP 186
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
146-177 |
1.01e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.03 E-value: 1.01e-03
10 20 30
....*....|....*....|....*....|..
gi 24662800 146 LSGGERKRLSIALELVDNPNIFFLDEPTSGLD 177
Cdd:PRK11819 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
143-179 |
1.25e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 42.03 E-value: 1.25e-03
10 20 30
....*....|....*....|....*....|....*..
gi 24662800 143 AEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEV 179
Cdd:NF033858 395 PDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPV 431
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
133-206 |
2.05e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.45 E-value: 2.05e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24662800 133 LHLNHRRNVTAEKLSGGERK---RLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQAMAYEGRTIVCTIHQPS 206
Cdd:pfam13304 224 LENGGGGELPAFELSDGTKRllaLLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
146-199 |
2.94e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 40.78 E-value: 2.94e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 146 LSGGERKRLSIALEL--VDNPNIFF-LDEPTSGL--DEVtaAQCIRLLQAMAYEGRTIV 199
Cdd:COG0178 827 LSGGEAQRVKLASELskRSTGKTLYiLDEPTTGLhfHDI--RKLLEVLHRLVDKGNTVV 883
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
36-206 |
3.15e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 39.08 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 36 ERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGvTGNIKMKRDN-----ACYITQDDHHQTL---LTVEEl 107
Cdd:PRK13541 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS-SGNIYYKNCNinniaKPYCTYIGHNLGLkleMTVFE- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 108 mNLACDLKLKNrhkKAEIMTDILENLHLNHRRNVTAEKLSGGERKRLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRL 187
Cdd:PRK13541 90 -NLKFWSEIYN---SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL 165
|
170
....*....|....*....
gi 24662800 188 LQAMAYEGRTIVCTIHQPS 206
Cdd:PRK13541 166 IVMKANSGGIVLLSSHLES 184
|
|
| PhnN |
COG3709 |
Ribose 1,5-bisphosphate kinase PhnN [Carbohydrate transport and metabolism]; |
48-69 |
3.98e-03 |
|
Ribose 1,5-bisphosphate kinase PhnN [Carbohydrate transport and metabolism];
Pssm-ID: 442923 Cd Length: 188 Bit Score: 38.64 E-value: 3.98e-03
|
| Ras_like_GTPase |
cd00882 |
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ... |
54-72 |
4.76e-03 |
|
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.
Pssm-ID: 206648 [Multi-domain] Cd Length: 161 Bit Score: 38.21 E-value: 4.76e-03
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
26-178 |
5.16e-03 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 39.81 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 26 ERKNFWRVTGERRILNGVSGSFRNGQLSAIMGPSGAGKSSLLNAISGFRRDGV-TGNIKMKRD--NACYITQDDH----- 97
Cdd:TIGR02633 3 EMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTwDGEIYWSGSplKASNIRDTERagivi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24662800 98 -HQTL-----LTVEELMNLACDLKLKNRHKKAEIMTDILENL-------HLNHRRNVTaeKLSGGERKRLSIALELVDNP 164
Cdd:TIGR02633 83 iHQELtlvpeLSVAENIFLGNEITLPGGRMAYNAMYLRAKNLlrelqldADNVTRPVG--DYGGGQQQLVEIAKALNKQA 160
|
170
....*....|....
gi 24662800 165 NIFFLDEPTSGLDE 178
Cdd:TIGR02633 161 RLLILDEPSSSLTE 174
|
|
| MMR_HSR1 |
pfam01926 |
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ... |
54-72 |
5.67e-03 |
|
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.
Pssm-ID: 460387 [Multi-domain] Cd Length: 113 Bit Score: 36.83 E-value: 5.67e-03
|
| YfjP |
cd11383 |
YfjP GTPase; The Era (E. coli Ras-like protein)-like YfjP subfamily includes several ... |
54-72 |
8.45e-03 |
|
YfjP GTPase; The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain.
Pssm-ID: 206743 [Multi-domain] Cd Length: 140 Bit Score: 36.93 E-value: 8.45e-03
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
145-190 |
8.71e-03 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 36.06 E-value: 8.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 24662800 145 KLSGGERK-------------RLSIALELVDNPNIFFLDEPTSGLDEVTAAQCIRLLQA 190
Cdd:pfam13558 32 GLSGGEKQllaylplaaalaaQYGSAEGRPPAPRLVFLDEAFAKLDEENIRTALELLRA 90
|
|
| Era_like |
cd00880 |
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ... |
54-72 |
8.81e-03 |
|
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.
Pssm-ID: 206646 [Multi-domain] Cd Length: 161 Bit Score: 37.23 E-value: 8.81e-03
|
| |
