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Conserved domains on  [gi|24646197|ref|NP_731673|]
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calphotin, isoform A [Drosophila melanogaster]

Protein Classification

ribonuclease E domain-containing protein( domain architecture ID 1001066)

ribonuclease E domain-containing protein similar to ribonuclease E (RNase E), a principal factor in RNA turnover and processing that helps to exercise fine control of gene expression in bacteria

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
rne super family cl35953
ribonuclease E; Reviewed
 228-409 1.49e-13

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 75.08  E-value: 1.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   228 IPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVAP-VSASTEPPVAAATLTTAPETPAlAPVV 306
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPvVVAEPQPEEVVVVETTHPEVIA-APVT 925

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   307 AESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETtpPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTAS 386
Cdd:PRK10811  926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV--VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003

                         170       180       190
                  ....*....|....*....|....*....|.
gi 24646197   387 AVPELPPV-----IAP---SPVPSAVAETPV 409
Cdd:PRK10811 1004 AQVPEATVehnhaTAPmtrAPAPEYVPEAPR 1034
rne super family cl35953
ribonuclease E; Reviewed
 331-594 3.29e-12

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 70.45  E-value: 3.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   331 APPVVAETPEVASVAVAETTPPVVPPVAAES--IPAPVVATTPVPATLAVTDPDVTASAVP------------------- 389
Cdd:PRK10811  734 SVAEEAVAPVVEETVAAEPVVQEVPAPRTELvkVPLPVVAQTAPEQDEENNAENRDNNGMPrrsrrsprhlrvsgqrrrr 813

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   390 ---ELPPVIAPSPVPSAVAeTP------VDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAP 460
Cdd:PRK10811  814 yrdERYPTQSPMPLTVACA-SPemasgkVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVA 892

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   461 SDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVeVTTEVAVADVAPPEAAADliIE 540
Cdd:PRK10811  893 EVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPV-VEPQDETADIEEAAETAE--VV 969

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 24646197   541 PVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETslPPPNEAVASPEVAVAPIT 594
Cdd:PRK10811  970 VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP--AQVPEATVEHNHATAPMT 1021
rne super family cl35953
ribonuclease E; Reviewed
 109-300 6.05e-10

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 63.13  E-value: 6.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   109 VAVSAPVAPPVAA--TPTPVAPIPVAAPVIATPPVAASAP---TPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAA 183
Cdd:PRK10811  841 VWIRYPVVRPQDVqvEEQREAEEVQVQPVVAEVPVAAAVEpvvSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI 920

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   184 VPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVAtkPLAAAEPVVVAPPATETPVVAPAAAS 263
Cdd:PRK10811  921 AAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE--PEVVAQPAAPVVAEVAAEVETVTAVE 998

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 24646197   264 PhvSVAPAVETAVVAPVSASTEPPVAAATLTTAPETP 300
Cdd:PRK10811  999 P--EVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033
rne super family cl35953
ribonuclease E; Reviewed
 568-740 1.97e-08

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.13  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   568 SSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPepslATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPETTEPDV 647
Cdd:PRK10811  844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAA----VEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   648 ANindgAPATEITTPAVE-IVTAAAEVSDTAIPLIdPPVPQEIAVAEIPETetkpAEVIVEQSTIPIEAPVPEVSKYAEP 726
Cdd:PRK10811  920 IA----APVTEQPQVITEsDVAVAQEVAEHAEPVV-EPQDETADIEEAAET----AEVVVAEPEVVAQPAAPVVAEVAAE 990

                         170
                  ....*....|....
gi 24646197   727 VISEAPAAEVPITA 740
Cdd:PRK10811  991 VETVTAVEPEVAPA 1004
rne super family cl35953
ribonuclease E; Reviewed
 9-167 8.60e-06

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 49.65  E-value: 8.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197     9 PVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAA 88
Cdd:PRK10811  857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDV 936

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    89 PTPPAASPVSTP-------PVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVT-PVVSPVIA 160
Cdd:PRK10811  937 AVAQEVAEHAEPvvepqdeTADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPeATVEHNHA 1016


                  ....*..
gi 24646197   161 TPPVVPA 167
Cdd:PRK10811 1017 TAPMTRA 1023
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 228-409 1.49e-13

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 75.08  E-value: 1.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   228 IPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVAP-VSASTEPPVAAATLTTAPETPAlAPVV 306
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPvVVAEPQPEEVVVVETTHPEVIA-APVT 925

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   307 AESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETtpPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTAS 386
Cdd:PRK10811  926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV--VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003

                         170       180       190
                  ....*....|....*....|....*....|.
gi 24646197   387 AVPELPPV-----IAP---SPVPSAVAETPV 409
Cdd:PRK10811 1004 AQVPEATVehnhaTAPmtrAPAPEYVPEAPR 1034
rne PRK10811
ribonuclease E; Reviewed
 331-594 3.29e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 70.45  E-value: 3.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   331 APPVVAETPEVASVAVAETTPPVVPPVAAES--IPAPVVATTPVPATLAVTDPDVTASAVP------------------- 389
Cdd:PRK10811  734 SVAEEAVAPVVEETVAAEPVVQEVPAPRTELvkVPLPVVAQTAPEQDEENNAENRDNNGMPrrsrrsprhlrvsgqrrrr 813

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   390 ---ELPPVIAPSPVPSAVAeTP------VDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAP 460
Cdd:PRK10811  814 yrdERYPTQSPMPLTVACA-SPemasgkVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVA 892

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   461 SDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVeVTTEVAVADVAPPEAAADliIE 540
Cdd:PRK10811  893 EVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPV-VEPQDETADIEEAAETAE--VV 969

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 24646197   541 PVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETslPPPNEAVASPEVAVAPIT 594
Cdd:PRK10811  970 VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP--AQVPEATVEHNHATAPMT 1021
rne PRK10811
ribonuclease E; Reviewed
 109-300 6.05e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 63.13  E-value: 6.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   109 VAVSAPVAPPVAA--TPTPVAPIPVAAPVIATPPVAASAP---TPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAA 183
Cdd:PRK10811  841 VWIRYPVVRPQDVqvEEQREAEEVQVQPVVAEVPVAAAVEpvvSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI 920

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   184 VPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVAtkPLAAAEPVVVAPPATETPVVAPAAAS 263
Cdd:PRK10811  921 AAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE--PEVVAQPAAPVVAEVAAEVETVTAVE 998

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 24646197   264 PhvSVAPAVETAVVAPVSASTEPPVAAATLTTAPETP 300
Cdd:PRK10811  999 P--EVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033
rne PRK10811
ribonuclease E; Reviewed
 568-740 1.97e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.13  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   568 SSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPepslATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPETTEPDV 647
Cdd:PRK10811  844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAA----VEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   648 ANindgAPATEITTPAVE-IVTAAAEVSDTAIPLIdPPVPQEIAVAEIPETetkpAEVIVEQSTIPIEAPVPEVSKYAEP 726
Cdd:PRK10811  920 IA----APVTEQPQVITEsDVAVAQEVAEHAEPVV-EPQDETADIEEAAET----AEVVVAEPEVVAQPAAPVVAEVAAE 990

                         170
                  ....*....|....
gi 24646197   727 VISEAPAAEVPITA 740
Cdd:PRK10811  991 VETVTAVEPEVAPA 1004
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 127-635 1.01e-06

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 52.57  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  127 APIPVAAPVIATPPVAASAPT---------PAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAP 197
Cdd:COG3321  845 VPVDWSALYPGRGRRRVPLPTypfqredaaAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAA 924

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  198 AVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVV 277
Cdd:COG3321  925 ALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALAL 1004

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  278 APVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPV 357
Cdd:COG3321 1005 LAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAAL 1084

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  358 AAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPA 437
Cdd:COG3321 1085 ALAAALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALA 1164

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  438 PASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPV 517
Cdd:COG3321 1165 AALLAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAA 1244

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  518 EVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPE 597
Cdd:COG3321 1245 VAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAA 1324

                        490       500       510
                 ....*....|....*....|....*....|....*...
gi 24646197  598 PIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTET 635
Cdd:COG3321 1325 LLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAA 1362
rne PRK10811
ribonuclease E; Reviewed
 9-167 8.60e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 49.65  E-value: 8.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197     9 PVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAA 88
Cdd:PRK10811  857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDV 936

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    89 PTPPAASPVSTP-------PVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVT-PVVSPVIA 160
Cdd:PRK10811  937 AVAQEVAEHAEPvvepqdeTADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPeATVEHNHA 1016


                  ....*..
gi 24646197   161 TPPVVPA 167
Cdd:PRK10811 1017 TAPMTRA 1023
 
Name Accession Description Interval E-value
rne PRK10811
ribonuclease E; Reviewed
 228-409 1.49e-13

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 75.08  E-value: 1.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   228 IPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVAP-VSASTEPPVAAATLTTAPETPAlAPVV 306
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPvVVAEPQPEEVVVVETTHPEVIA-APVT 925

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   307 AESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETtpPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTAS 386
Cdd:PRK10811  926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEV--VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003

                         170       180       190
                  ....*....|....*....|....*....|.
gi 24646197   387 AVPELPPV-----IAP---SPVPSAVAETPV 409
Cdd:PRK10811 1004 AQVPEATVehnhaTAPmtrAPAPEYVPEAPR 1034
rne PRK10811
ribonuclease E; Reviewed
 331-594 3.29e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 70.45  E-value: 3.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   331 APPVVAETPEVASVAVAETTPPVVPPVAAES--IPAPVVATTPVPATLAVTDPDVTASAVP------------------- 389
Cdd:PRK10811  734 SVAEEAVAPVVEETVAAEPVVQEVPAPRTELvkVPLPVVAQTAPEQDEENNAENRDNNGMPrrsrrsprhlrvsgqrrrr 813

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   390 ---ELPPVIAPSPVPSAVAeTP------VDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAP 460
Cdd:PRK10811  814 yrdERYPTQSPMPLTVACA-SPemasgkVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVA 892

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   461 SDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVeVTTEVAVADVAPPEAAADliIE 540
Cdd:PRK10811  893 EVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPV-VEPQDETADIEEAAETAE--VV 969

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 24646197   541 PVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETslPPPNEAVASPEVAVAPIT 594
Cdd:PRK10811  970 VAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP--AQVPEATVEHNHATAPMT 1021
rne PRK10811
ribonuclease E; Reviewed
 255-457 1.00e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 68.91  E-value: 1.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   255 PVVAPAAASPHVSVAPavETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATpptpapepetiAPPV 334
Cdd:PRK10811  846 PVVRPQDVQVEEQREA--EEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEE-----------VVVV 912

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   335 VAETPEVASVAVAETTPPVVPPVAaesipaPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPP 414
Cdd:PRK10811  913 ETTHPEVIAAPVTEQPQVITESDV------AVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE 986

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 24646197   415 VLPPVAAEPVPAVVAEETPETPAP-----ASAPVTIA-ALDIPEVAPVI 457
Cdd:PRK10811  987 VAAEVETVTAVEPEVAPAQVPEATvehnhATAPMTRApAPEYVPEAPRH 1035
rne PRK10811
ribonuclease E; Reviewed
 330-502 3.64e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 66.99  E-value: 3.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   330 IAPPVVAETPEVASVAVAETTPpVVPPVAAESIPAPVVATTPVPATLAV--TDPDVTASAVPELPPVIAPSPVPsAVAET 407
Cdd:PRK10811  865 QVQPVVAEVPVAAAVEPVVSAP-VVEAVAEVVEEPVVVAEPQPEEVVVVetTHPEVIAAPVTEQPQVITESDVA-VAQEV 942

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   408 PVDLAPPVlpPVAAEPVPAVVAEETPETPAPasAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTT---ASV 484
Cdd:PRK10811  943 AEHAEPVV--EPQDETADIEEAAETAEVVVA--EPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEhnhATA 1018

                         170
                  ....*....|....*...
gi 24646197   485 PETTAPPAAVPTEPIDVS 502
Cdd:PRK10811 1019 PMTRAPAPEYVPEAPRHS 1036
rne PRK10811
ribonuclease E; Reviewed
 206-368 1.07e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 65.45  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   206 TPAPPPVAEIPVATIPEcVAPLIPEVSVVATKPLAAAEPVVVAPPAT--ETPVVAPAAASPHVSVAPAVETAVVAPVSAS 283
Cdd:PRK10811  849 RPQDVQVEEQREAEEVQ-VQPVVAEVPVAAAVEPVVSAPVVEAVAEVveEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQ 927

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   284 TePPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIP 363
Cdd:PRK10811  928 P-QVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006


                  ....*
gi 24646197   364 APVVA 368
Cdd:PRK10811 1007 PEATV 1011
PHA03247 PHA03247
large tegument protein UL36; Provisional
 116-557 3.23e-10

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 64.19  E-value: 3.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   116 APPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAV 195
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLT 2696

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   196 APAVAPVVAETPAPPPVAEIPVATIP---------------ECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPA 260
Cdd:PHA03247 2697 SLADPPPPPPTPEPAPHALVSATPLPpgpaaarqaspalpaAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   261 AASPHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPE 340
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   341 VASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLP--- 417
Cdd:PHA03247 2857 APGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPppp 2936

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   418 -----PVAAEPVPAVVAEETPETPAP-----ASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPET 487
Cdd:PHA03247 2937 prpqpPLAPTTDPAGAGEPSGAVPQPwlgalVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEE 3016

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   488 TAPPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPvEPPAPIPDLLEQTTS 557
Cdd:PHA03247 3017 TDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEP-DPATPEAGARESPSS 3085
rne PRK10811
ribonuclease E; Reviewed
 109-300 6.05e-10

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 63.13  E-value: 6.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   109 VAVSAPVAPPVAA--TPTPVAPIPVAAPVIATPPVAASAP---TPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAA 183
Cdd:PRK10811  841 VWIRYPVVRPQDVqvEEQREAEEVQVQPVVAEVPVAAAVEpvvSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI 920

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   184 VPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVAtkPLAAAEPVVVAPPATETPVVAPAAAS 263
Cdd:PRK10811  921 AAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE--PEVVAQPAAPVVAEVAAEVETVTAVE 998

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 24646197   264 PhvSVAPAVETAVVAPVSASTEPPVAAATLTTAPETP 300
Cdd:PRK10811  999 P--EVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033
rne PRK10811
ribonuclease E; Reviewed
 393-675 4.11e-09

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 60.44  E-value: 4.11e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   393 PVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVV--AEETPETPAPASA----------------------------- 441
Cdd:PRK10811  738 EAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAqtAPEQDEENNAENRdnngmprrsrrsprhlrvsgqrrrryrde 817

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   442 --------PVTIAALDiPEVA--------PViAAPSDAPAEAPSAAAPIVSTPpttaSVPETTAPPAAVPTEPIDVsvls 505
Cdd:PRK10811  818 ryptqspmPLTVACAS-PEMAsgkvwiryPV-VRPQDVQVEEQREAEEVQVQP----VVAEVPVAAAVEPVVSAPV---- 887

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   506 EAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPV-EPPAPIpdlLEQTTSVPAVEAAESTsspiPETSLPPPNEAVA 584
Cdd:PRK10811  888 VEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVtEQPQVI---TESDVAVAQEVAEHAE----PVVEPQDETADIE 960

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   585 SPEVAVAPITAPEPIPEPEPSLATPTEPIPVeapvviqeavdaVEVPVTETSTSIPETTEPDVANINDGAPATeiTTPAV 664
Cdd:PRK10811  961 EAAETAEVVVAEPEVVAQPAAPVVAEVAAEV------------ETVTAVEPEVAPAQVPEATVEHNHATAPMT--RAPAP 1026

                         330
                  ....*....|.
gi 24646197   665 EIVTAAAEVSD 675
Cdd:PRK10811 1027 EYVPEAPRHSD 1037
rne PRK10811
ribonuclease E; Reviewed
 568-740 1.97e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.13  E-value: 1.97e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   568 SSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPepslATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPETTEPDV 647
Cdd:PRK10811  844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAA----VEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   648 ANindgAPATEITTPAVE-IVTAAAEVSDTAIPLIdPPVPQEIAVAEIPETetkpAEVIVEQSTIPIEAPVPEVSKYAEP 726
Cdd:PRK10811  920 IA----APVTEQPQVITEsDVAVAQEVAEHAEPVV-EPQDETADIEEAAET----AEVVVAEPEVVAQPAAPVVAEVAAE 990

                         170
                  ....*....|....
gi 24646197   727 VISEAPAAEVPITA 740
Cdd:PRK10811  991 VETVTAVEPEVAPA 1004
PHA03247 PHA03247
large tegument protein UL36; Provisional
 330-773 4.42e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.26  E-value: 4.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   330 IAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTasavPELPPVIAPSPVPSAVAETPV 409
Cdd:PHA03247 2568 VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTH----APDPPPPSPSPAANEPDPHPP 2643

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   410 DLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAaapivstPPTTASVPETTA 489
Cdd:PHA03247 2644 PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP-------PPTPEPAPHALV 2716

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   490 PPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAVEAAESTSS 569
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   570 PIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPETTEPDVan 649
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAK-- 2874

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   650 indgaPATEITTPAVEIVTAAAEVSDTAIPLiDPPVPQEIAVAEIPETETKPAEVIVEQSTIPIEAPVPEVSKYAEPVIS 729
Cdd:PHA03247 2875 -----PAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 24646197   730 EAPAAEvPITAGDNPDNTSVGISEvVPTIAEKAVEEVPTSEIPE 773
Cdd:PHA03247 2949 PAGAGE-PSGAVPQPWLGALVPGR-VAVPRFRVPQPAPSREAPA 2990
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 240-397 1.41e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 55.26  E-value: 1.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  240 AAAEPVVVAPPATeTPVVAPAAASPHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVAT 319
Cdd:PRK07994 362 AAPLPEPEVPPQS-AAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24646197  320 PPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAP 397
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 208-362 3.84e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 53.72  E-value: 3.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  208 APPPVAEIPVATIPecvAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPAA--ASPHVSVAPAVETAVVAPVSASTE 285
Cdd:PRK07994 363 APLPEPEVPPQSAA---PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVplPETTSQLLAARQQLQRAQGATKAK 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  286 PPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVA-----ETTPPVVPPVAAE 360
Cdd:PRK07994 440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKkalehEKTPELAAKLAAE 519


                 ..
gi 24646197  361 SI 362
Cdd:PRK07994 520 AI 521
rne PRK10811
ribonuclease E; Reviewed
 528-735 3.86e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.89  E-value: 3.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   528 VAPPEAAAD--LIIEPVEPPapipdllEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPIPepeps 605
Cdd:PRK10811  831 CASPEMASGkvWIRYPVVRP-------QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEP----- 898

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   606 lATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPETTEPDVANIndGAPATEITTPAVEIVTAAAEVSDTAIPLIDPPV 685
Cdd:PRK10811  899 -VVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV--AEHAEPVVEPQDETADIEEAAETAEVVVAEPEV 975

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 24646197   686 PQEIAVAEIPETETKPAEVIVEQSTIPIEAPVPEVSK--YAEPVISEAPAAE 735
Cdd:PRK10811  976 VAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEhnHATAPMTRAPAPE 1027
rne PRK10811
ribonuclease E; Reviewed
 205-362 6.01e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 53.50  E-value: 6.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   205 ETPAPPPVAEIPVATIPECVaplIPEVSVVATKPLAAAEPVVVAPPATE-TPVVAPAAASPHVSVAPAVETAVVAPVSAS 283
Cdd:PRK10811  881 PVVSAPVVEAVAEVVEEPVV---VAEPQPEEVVVVETTHPEVIAAPVTEqPQVITESDVAVAQEVAEHAEPVVEPQDETA 957

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24646197   284 TEPPVAAATLTTAPETPALAPVVAESQVAANTVVatpPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESI 362
Cdd:PRK10811  958 DIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV---ETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033
PksD COG3321
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...
 127-635 1.01e-06

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442550 [Multi-domain]  Cd Length: 1386  Bit Score: 52.57  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  127 APIPVAAPVIATPPVAASAPT---------PAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAP 197
Cdd:COG3321  845 VPVDWSALYPGRGRRRVPLPTypfqredaaAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAA 924

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  198 AVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVV 277
Cdd:COG3321  925 ALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALAL 1004

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  278 APVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPV 357
Cdd:COG3321 1005 LAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAAL 1084

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  358 AAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPA 437
Cdd:COG3321 1085 ALAAALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALA 1164

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  438 PASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPV 517
Cdd:COG3321 1165 AALLAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAA 1244

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  518 EVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPE 597
Cdd:COG3321 1245 VAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAA 1324

                        490       500       510
                 ....*....|....*....|....*....|....*...
gi 24646197  598 PIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTET 635
Cdd:COG3321 1325 LLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAA 1362
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 356-501 1.28e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.02  E-value: 1.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  356 PVAAESIPAPVVATTPVPATLAvtdpdvTASAVPELPPVIAPSPVPSAVAETPvdlaPPVLPPVAAEPVPAVVAEETPET 435
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAA------APAAAPVAQAAAAPAPAAAPAAAAS----APAAPPAAAPPAPVAAPAAAAPA 435

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24646197  436 PAPASAPvtiAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPttASVPETTAPPAAVPTEPIDV 501
Cdd:PRK14951 436 AAPAAAP---AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA--PAPAAAPAAARLTPTEEGDV 496
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
398-592 1.37e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.19  E-value: 1.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  398 SPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPeVAPVIAAPSDAPAEAPSAAAPIVST 477
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPAR-RSPAPEALAAARQASARGPGGAPAP 450

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  478 PPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTS 557
Cdd:PRK12323 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 24646197  558 VPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAP 592
Cdd:PRK12323 531 TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
rne PRK10811
ribonuclease E; Reviewed
 501-774 1.42e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 52.35  E-value: 1.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   501 VSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAadliiEPVEPPAP-IPDLLEQTTSVPAVEAAESTSSP--------- 570
Cdd:PRK10811  729 VRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRT-----ELVKVPLPvVAQTAPEQDEENNAENRDNNGMPrrsrrsprh 803

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   571 ---------------IPETSLPPPNEAVASPEVAVAP--ITAPEPIPEPEPSLATPTEPIPVEAPVViqeavdaVEVPVT 633
Cdd:PRK10811  804 lrvsgqrrrryrderYPTQSPMPLTVACASPEMASGKvwIRYPVVRPQDVQVEEQREAEEVQVQPVV-------AEVPVA 876

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   634 ETstsiPETTEPDVANINDGAPATEITTPAVEIVTAAAEVSDTAIPLIDPPVPQEIAVAEipetetkPAEVIVEQSTIPI 713
Cdd:PRK10811  877 AA----VEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVIT-------ESDVAVAQEVAEH 945

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24646197   714 EAPVPEVSKYAEPVISEAPAAEVPITAGDNPDNTSVGI--SEVVPTIAEKAVEEVPTSEIPEQ 774
Cdd:PRK10811  946 AEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVvaEVAAEVETVTAVEPEVAPAQVPE 1008
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 100-222 1.61e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.64  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  100 PPVAVAQIPVAVSAPVAPPVAATPTPV-APIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVA 178
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAApVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 24646197  179 AVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPE 222
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 279-442 1.75e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.79  E-value: 1.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  279 PVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEpetiAPPVVAETPEVASVAVAETTPPVVPPVA 358
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQ----QAPAVPLPETTSQLLAARQQLQRAQGAT 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  359 AESIPAPVVATTPVPATlAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAP 438
Cdd:PRK07994 437 KAKKSEPAAASRARPVN-SALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515


                 ....
gi 24646197  439 ASAP 442
Cdd:PRK07994 516 LAAE 519
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 331-448 2.77e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.87  E-value: 2.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  331 APPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVD 410
Cdd:PRK14951 376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 24646197  411 LAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAAL 448
Cdd:PRK14951 456 APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 392-546 2.78e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 51.02  E-value: 2.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  392 PPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPvtiAALDIPEVAPVIAAPSD-----APAE 466
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP---AVPLPETTSQLLAARQQlqraqGATK 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  467 APSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEA----AIETPVAPPVEVTTEVAVADVA----PPEAAADLI 538
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAyrwkATNPVEVKKEPVATPKALKKALehekTPELAAKLA 517


                 ....*...
gi 24646197  539 IEPVEPPA 546
Cdd:PRK07994 518 AEAIERDP 525
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
235-449 3.27e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.64  E-value: 3.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  235 ATKPLAAAEPVVVAPPAtetpVVAPAAASPHVSVAPAveTAVVAPVSASTEPPVAAAtltTAPETPALAPVVAESQVAAN 314
Cdd:PRK12323 372 AGPATAAAAPVAQPAPA----AAAPAAAAPAPAAPPA--APAAAPAAAAAARAVAAA---PARRSPAPEALAAARQASAR 442

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  315 TVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAP--VVATTPVPATLAVTDPDVTASAVPELP 392
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADddPPPWEELPPEFASPAPAQPDAAPAGWV 522

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 24646197  393 PVIAPSPvPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALD 449
Cdd:PRK12323 523 AESIPDP-ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
359-547 3.53e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 50.64  E-value: 3.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  359 AESIPAPVVATTPVP-ATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPV-AAEPVPAVVAEETPETP 436
Cdd:PRK12323 375 ATAAAAPVAQPAPAAaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAArQASARGPGGAPAPAPAP 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  437 APASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPP 516
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                        170       180       190
                 ....*....|....*....|....*....|.
gi 24646197  517 VEVTTEVAVADVAPPEAAADLIIEPVEPPAP 547
Cdd:PRK12323 535 DDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 343-495 5.66e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 49.86  E-value: 5.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  343 SVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAV-AETPVDLAPPVLPPVAA 421
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLaARQQLQRAQGATKAKKS 441

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24646197  422 EPVPAVVAEETPETPAPaSAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVP 495
Cdd:PRK07994 442 EPAAASRARPVNSALER-LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-529 6.57e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.98  E-value: 6.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   98 STPPVAVAQIPVAVSAPVAPPVAATPTPVAPipVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPV 177
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPA--AAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA 473

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  178 AAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPP----ATE 253
Cdd:PRK07764 474 PEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDtlvlGFS 553

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  254 TPVVAPAAASPHvsVAPAVETAVVAPVSASTEPPVAAATlttapetpalapvvaESQVAANTVVATPPTPAPEPETIAPP 333
Cdd:PRK07764 554 TGGLARRFASPG--NAEVLVTALAEELGGDWQVEAVVGP---------------APGAAGGEGPPAPASSGPPEEAARPA 616

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  334 vvAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAP 413
Cdd:PRK07764 617 --APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  414 PVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAA 493
Cdd:PRK07764 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774

                        410       420       430
                 ....*....|....*....|....*....|....*.
gi 24646197  494 VPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVA 529
Cdd:PRK07764 775 PPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMELLE 810
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 393-539 7.36e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.71  E-value: 7.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  393 PVIAPSPVPSAVAETPvdlAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAA 472
Cdd:PRK14951 366 PAAAAEAAAPAEKKTP---ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24646197  473 PIVSTPP--TTASVPETTAPPAAVPTEPiDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLII 539
Cdd:PRK14951 443 AAVALAPapPAQAAPETVAIPVRVAPEP-AVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAI 510
rne PRK10811
ribonuclease E; Reviewed
 9-167 8.60e-06

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 49.65  E-value: 8.60e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197     9 PVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAA 88
Cdd:PRK10811  857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDV 936

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    89 PTPPAASPVSTP-------PVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVT-PVVSPVIA 160
Cdd:PRK10811  937 AVAQEVAEHAEPvvepqdeTADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPeATVEHNHA 1016


                  ....*..
gi 24646197   161 TPPVVPA 167
Cdd:PRK10811 1017 TAPMTRA 1023
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
331-498 9.34e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.49  E-value: 9.34e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  331 APPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVV--ATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETP 408
Cdd:PRK12323 386 APAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAApaRRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  409 VdlAPPVLPPVAAEPVPAVVAEETPETPAPASAPV---TIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVP 485
Cdd:PRK12323 466 A--AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweeLPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

                        170
                 ....*....|...
gi 24646197  486 ETTAPPAAVPTEP 498
Cdd:PRK12323 544 APAAAPAPRAAAA 556
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
116-313 9.75e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 9.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  116 APPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAV 195
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  196 APAVAPVVAETPAPPPVAEIPVAtipecvAPLIPEVSVVATKPLAAAEPVvvaPPATETPVVAPAAASPHVSVAPAVETA 275
Cdd:PRK12323 453 APAAAPAAAARPAAAGPRPVAAA------AAAAPARAAPAAAPAPADDDP---PPWEELPPEFASPAPAQPDAAPAGWVA 523

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 24646197  276 VVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAA 313
Cdd:PRK12323 524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 411-568 1.53e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 48.71  E-value: 1.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  411 LAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALD--IPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETT 488
Cdd:PRK07994 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPasAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  489 APPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIpdLLEQTTSVPAVEAAESTS 568
Cdd:PRK07994 445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKAL--EHEKTPELAAKLAAEAIE 522
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 335-455 2.06e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 2.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  335 VAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLA-- 412
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAva 446

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 24646197  413 -PPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAP 455
Cdd:PRK14951 447 lAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PHA03247 PHA03247
large tegument protein UL36; Provisional
 3-440 2.09e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 2.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197     3 PGTIPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASvQPATVTIPAPAPIAAASVAPVASVA 82
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS-RPRRARRLGRAAQASSPPQRPRRRA 2687

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    83 PPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPviATPPVAASAPTPAAVTPVVSPVIATP 162
Cdd:PHA03247 2688 ARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP--APPAVPAGPATPGGPARPARPPTTAG 2765

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   163 PVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPecVAPLIPEVSVVATKPLAAA 242
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP--AGPLPPPTSAQPTAPPPPP 2843

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   243 EPVvvappatetpvvaPAAASPHVSVAPAVETAVVAPvsasTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPT 322
Cdd:PHA03247 2844 GPP-------------PPSLPLGGSVAPGGDVRRRPP----SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   323 PAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPeLPPVIAPSPVPS 402
Cdd:PHA03247 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA-VPRFRVPQPAPS 2985

                         410       420       430
                  ....*....|....*....|....*....|....*...
gi 24646197   403 AVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPAS 440
Cdd:PHA03247 2986 REAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
295-495 2.27e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.95  E-value: 2.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  295 TAPETPALAPVVAESQVA-ANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVP 373
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  374 ATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEV 453
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 24646197  454 APVIAAPSDApaeapsaaapivSTPPTTASVPETTAPPAAVP 495
Cdd:PRK12323 532 ADPDDAFETL------------APAPAAAPAPRAAAATEPVV 561
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 270-430 2.30e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.17  E-value: 2.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  270 PAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAET 349
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  350 TPPVVPPVAAESIPAPVVATTPVPATlavtdpdvtasAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVA 429
Cdd:PRK14951 447 LAPAPPAQAAPETVAIPVRVAPEPAV-----------ASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITALAR 515


                 .
gi 24646197  430 E 430
Cdd:PRK14951 516 E 516
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
267-461 3.28e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 3.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  267 SVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAES--QVAANTVVATPPTPAPEPETIAPPVVAETPEVASV 344
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAarAVAAAPARRSPAPEALAAARQASARGPGGAPAPAP 452

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  345 AVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVP---ELPPVIAPSPVPSAVAETPVDLAPPVLPPVAA 421
Cdd:PRK12323 453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPpweELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 24646197  422 EPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAPS 461
Cdd:PRK12323 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 290-461 7.44e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.40  E-value: 7.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  290 AATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEpetiAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVAT 369
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA----VPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  370 TPVPATLAVTDPDVTASAVPELPPViapSPVPSAVAEtpvdlAPPVLPPVAAEPVPAVVAEETPETpAPASAPVTIAALD 449
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASV---RPAPSALEK-----APAKKEAYRWKATNPVEVKKEPVA-TPKALKKALEHEK 508

                        170
                 ....*....|..
gi 24646197  450 IPEVAPVIAAPS 461
Cdd:PRK07994 509 TPELAAKLAAEA 520
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 125-340 8.98e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 8.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  125 PVAPIPV-AAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTtvpvaapvaavpaavpvvapvlapavapavapvv 203
Cdd:PRK07994 361 PAAPLPEpEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASA---------------------------------- 406

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  204 aetPAPPPVAEIPVATIPEcvaplipevsvvatkpLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETavVAPVSAS 283
Cdd:PRK07994 407 ---PQQAPAVPLPETTSQL----------------LAARQQLQRAQGATKAKKSEPAAASRARPVNSALER--LASVRPA 465

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 24646197  284 TEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPE 340
Cdd:PRK07994 466 PSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIE 522
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 101-316 1.09e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  101 PVAVAQIPVAVSAPvAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVtPVVSPVIATPPVVPAnttvpvaapvaav 180
Cdd:PRK07994 361 PAAPLPEPEVPPQS-AAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQA-PAVPLPETTSQLLAA------------- 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  181 paavpvvapvLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPA 260
Cdd:PRK07994 426 ----------RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVA 495

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24646197  261 AasphvsvapavETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAES-------QVAANTV 316
Cdd:PRK07994 496 T-----------PKALKKALEHEKTPELAAKLAAEAIERDPWAALVSQLglpglveQLALNAW 547
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 355-476 1.09e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  355 PPVAAESIPAPVVATTPVPATLAVTdPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEETPE 434
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQA-AAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 24646197  435 TPAPASAPVTIAALDIPEVAPVIAAPsdAPAEAPSAAAPIVS 476
Cdd:PRK14951 452 PAQAAPETVAIPVRVAPEPAVASAAP--APAAAPAAARLTPT 491
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 352-614 1.23e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.85  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   352 PVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDL-APPVLPPVAAEPVPAVVAE 430
Cdd:PRK10263  315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIApAPEGYPQQSQYAQPAVQYN 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   431 ETPETPAPASAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPI---------VSTPPTTASVPETTAPPAAVPTEPIDV 501
Cdd:PRK10263  395 EPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPeqpvagnawQAEEQQSTFAPQSTYQTEQTYQQPAAQ 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   502 SVLSEAaiETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPA-----------PIPDLLEQTTSVPAVEAAESTSSP 570
Cdd:PRK10263  475 EPLYQQ--PQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRArereqlaawyqPIPEPVKEPEPIKSSLKAPSVAAV 552

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 24646197   571 IPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIP 614
Cdd:PRK10263  553 PPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRP 596
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 99-506 1.27e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   99 TPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVA 178
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  179 AVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIP-ECVAPLIPEV------SVVATKPLAAAEPVVVAPPA 251
Cdd:PRK07764 466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDaATLRERWPEIlaavpkRSRKTWAILLPEATVLGVRG 545

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  252 TE------TPVVAPAAASPHVS--VAPAVE---------TAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAAN 314
Cdd:PRK07764 546 DTlvlgfsTGGLARRFASPGNAevLVTALAeelggdwqvEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPA 625

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  315 TVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPV 394
Cdd:PRK07764 626 APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  395 IAPSPVPSAVAETPvdlaPPVLPPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAPSDAPAEapSAAAPI 474
Cdd:PRK07764 706 AATPPAGQADDPAA----QPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA--PPPSPP 779

                        410       420       430
                 ....*....|....*....|....*....|..
gi 24646197  475 VSTPPTTASVPETTAPPAAVPTEPIDVSVLSE 506
Cdd:PRK07764 780 SEEEEMAEDDAPSMDDEDRRDAEEVAMELLEE 811
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 205-308 1.46e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.48  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  205 ETPAPPPVAEIPVATIPECVAPLI---PEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVaPVS 281
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPAAAasaPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI-PVR 465

                         90       100
                 ....*....|....*....|....*..
gi 24646197  282 ASTEPPVAAATLTTAPETPALAPVVAE 308
Cdd:PRK14951 466 VAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 15-438 1.50e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.36  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   15 AAPVTPSAVAAPVQ-----VVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAAP 89
Cdd:PRK07764 366 SASDDERGLLARLErlerrLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   90 TPPAASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPViATPPVAASAPTPAAVTPVVSPVIATPPVVPAnT 169
Cdd:PRK07764 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPA-AAPAAPAAPAAPAGADDAATLRERWPEILAA-V 523

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  170 TVPVAAPVAAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAP 249
Cdd:PRK07764 524 PKRSRKTWAILLPEATVLGVRGDTLVLGFSTGGLARRFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAP 603

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  250 PATETPVVAPAAASPHVSVAPAvETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAE---SQVAANTVVATPPTPAPE 326
Cdd:PRK07764 604 ASSGPPEEAARPAAPAAPAAPA-APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDasdGGDGWPAKAGGAAPAAPP 682

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  327 PETIAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAE 406
Cdd:PRK07764 683 PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762

                        410       420       430
                 ....*....|....*....|....*....|..
gi 24646197  407 TPVDLAPPVLPPVAAEPVPAVVAEETPETPAP 438
Cdd:PRK07764 763 APAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
rne PRK10811
ribonuclease E; Reviewed
 99-270 1.56e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 45.42  E-value: 1.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    99 TPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAA---PVIATPPVAASAPTPAAVTPVVSPVIATP-PVVPAnttvpva 174
Cdd:PRK10811  880 EPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETthpEVIAAPVTEQPQVITESDVAVAQEVAEHAePVVEP------- 952

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   175 apvaavpaavpvvapvlapaVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKplaaaepvvVAPPATET 254
Cdd:PRK10811  953 --------------------QDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVT---------AVEPEVAP 1003

                         170
                  ....*....|....*.
gi 24646197   255 PVVAPAAASPHVSVAP 270
Cdd:PRK10811 1004 AQVPEATVEHNHATAP 1019
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 231-639 1.66e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.36  E-value: 1.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  231 VSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQ 310
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  311 VAANTVVATPPTPAPEPetiAPPVVAETPEVASVAVAETTPPVVPPVAAESIPAPVVATTP--VPATLAVTDPDVTASAV 388
Cdd:PRK07764 467 APAPAAAPEPTAAPAPA---PPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPkrSRKTWAILLPEATVLGV 543

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  389 PELPPVIAPSPVPSA-------VAETPVDLAPPVL-----PPVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPV 456
Cdd:PRK07764 544 RGDTLVLGFSTGGLArrfaspgNAEVLVTALAEELggdwqVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAA 623

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  457 IAAPSDAPAEapSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAAD 536
Cdd:PRK07764 624 PAAPAPAGAA--AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  537 LIIEPVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPVE 616
Cdd:PRK07764 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

                        410       420
                 ....*....|....*....|...
gi 24646197  617 APVVIQEAVDAVEVPVTETSTSI 639
Cdd:PRK07764 782 EEEMAEDDAPSMDDEDRRDAEEV 804
rne PRK10811
ribonuclease E; Reviewed
 10-167 2.12e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 45.03  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    10 VSAPVAAPVTPSAVA-APVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAA 88
Cdd:PRK10811  843 IRYPVVRPQDVQVEEqREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAA 922

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    89 PTPPAASPVSTPPVAVAQIPVAVSAPVAPPV-----AATPTPVAPIPVAAPVIATPPVA---ASAPTPAAVTPVVSPVIA 160
Cdd:PRK10811  923 PVTEQPQVITESDVAVAQEVAEHAEPVVEPQdetadIEEAAETAEVVVAEPEVVAQPAApvvAEVAAEVETVTAVEPEVA 1002


                  ....*..
gi 24646197   161 TPPVVPA 167
Cdd:PRK10811 1003 PAQVPEA 1009
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 340-454 2.75e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.42  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  340 EVASVAVAETTPPVVPPVAAESIPAPVVATTPVPAT---LAVTDPDVTASAVPELPPviaPSPVPSAVAETPVDLAPPVL 416
Cdd:PRK14950 352 ELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTrpkAAAAANIPPKEPVRETAT---PPPVPPRPVAPPVPHTPESA 428

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 24646197  417 PPVAAEPVPavvAEETPETPAPASAPVTIAALDIPEVA 454
Cdd:PRK14950 429 PKLTRAAIP---VDEKPKYTPPAPPKEEEKALIADGDV 463
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 5-160 2.97e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 2.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    5 TIPSPVSAPVAAPVTPSAvAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPP 84
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASA-QATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24646197   85 VVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIA 160
Cdd:PRK07994 443 PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 235-391 4.01e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 4.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  235 ATKPLAAAEPVVVAPPATETPVVAPAAAsphvsvapAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAAN 314
Cdd:PRK14951 363 AFKPAAAAEAAAPAEKKTPARPEAAAPA--------AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAP 434

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24646197  315 TVVATpptPAPEPETIAPPvvaetPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTDP-DVTASAVPEL 391
Cdd:PRK14951 435 AAAPA---AAPAAVALAPA-----PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEgDVWHATVQQL 504
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
20-245 5.69e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 5.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   20 PSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVASVAPPVVAAPTPPAASPVST 99
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  100 PPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPviatppvaasAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVAA 179
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP----------APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24646197  180 VPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPV 245
Cdd:PRK12323 525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPV 590
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 99-167 9.45e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 9.45e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 24646197   99 TPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPA 167
Cdd:PRK14951 388 APAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA 456
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 495-679 1.29e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  495 PTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPdlleQTTSVPAVEAAESTSSPIPET 574
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPL----PETTSQLLAARQQLQRAQGAT 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  575 SLPPPNEAVASPEvavAPITAPEPIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTETSTsiPETTEPDVANINDGA 654
Cdd:PRK07994 437 KAKKSEPAAASRA---RPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT--PKALKKALEHEKTPE 511

                        170       180
                 ....*....|....*....|....*
gi 24646197  655 PATEITTPAVEIVTAAAEVSDTAIP 679
Cdd:PRK07994 512 LAAKLAAEAIERDPWAALVSQLGLP 536
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 482-646 1.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  482 ASVPETTAPPAAVPTEPIDVSVlseAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAV 561
Cdd:PRK07994 363 APLPEPEVPPQSAAPAASAQAT---AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  562 EAAESTSS-PIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTETSTsIP 640
Cdd:PRK07994 440 KSEPAAASrARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKL-AA 518


                 ....*.
gi 24646197  641 ETTEPD 646
Cdd:PRK07994 519 EAIERD 524
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
476-672 1.91e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.79  E-value: 1.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  476 STPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQT 555
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  556 TSVPAVEAAestSSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPslatPTEPIPVEAPVVIQEAVDAVEVPVTET 635
Cdd:PRK12323 452 PAPAAAPAA---AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP----PWEELPPEFASPAPAQPDAAPAGWVAE 524

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 24646197  636 STSIPETTEPDVANINDGAPATEITTPAVEIVTAAAE 672
Cdd:PRK12323 525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
285-468 2.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 2.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  285 EPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVV---PPVAAES 361
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAapaPPATADR 438

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  362 IPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPvdlappvlPPVAAEPVPAVVAEETPETPAPASA 441
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP--------PDAAFEPAPRAAAPSAATPAAVPDA 510

                        170       180
                 ....*....|....*....|....*..
gi 24646197  442 PVTIAALDIPEVAPVIAAPSDAPAEAP 468
Cdd:PRK07003 511 RAPAAASREDAPAAAAPPAPEARPPTP 537
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 208-443 2.49e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 2.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   208 APPPVAEIPVATIPECVAPLIPevsVVATKPLAAAEPVVVAP---------PATETPVVAPAAAS--------------- 263
Cdd:PRK10263  318 EPVAVAAAATTATQSWAAPVEP---VTQTPPVASVDVPPAQPtvawqpvpgPQTGEPVIAPAPEGypqqsqyaqpavqyn 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   264 -PHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAP------PVVA 336
Cdd:PRK10263  395 ePLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTeqtyqqPAAQ 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   337 ETPEVASVAVAETTPPVVPPVAAESIPA--PVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPP 414
Cdd:PRK10263  475 EPLYQQPQPVEQQPVVEPEPVVEETKPArpPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPP 554

                         250       260       270
                  ....*....|....*....|....*....|.
gi 24646197   415 VLPPVAAEPVPAVVAEETPETPAPAS--APV 443
Cdd:PRK10263  555 VEAAAAVSPLASGVKKATLATGAAATvaAPV 585
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 418-593 2.54e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 2.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  418 PVAAEPVPAVVAEETPETPAPASAPVTIAALDIPEVAPVIAAPSDAPaeapsaaapivstPPTTASVPETTAPPAAVPTE 497
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAP-------------QQAPAVPLPETTSQLLAARQ 427

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  498 PIDVsvlSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAVEAAESTSSPipeTSLP 577
Cdd:PRK07994 428 QLQR---AQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP---KALK 501

                        170
                 ....*....|....*.
gi 24646197  578 PPNEAVASPEVAVAPI 593
Cdd:PRK07994 502 KALEHEKTPELAAKLA 517
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-307 2.62e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197     2 EPGTIPSPVSAPVAAPVTPSAV--AAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPAPIAAASVAPVA 79
Cdd:PHA03247 2707 TPEPAPHALVSATPLPPGPAAArqASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    80 SVAPPVVAAPTPPAASPVSTPPVAVAQiPVAVSAPVAPPVAATPTPVAPIPvAAPVIATPPVAASAPTPAAVTPVVSPVI 159
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLA-PAAALPPAASPAGPLPPPTSAQP-TAPPPPPGPPPPSLPLGGSVAPGGDVRR 2864

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   160 ATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPECVAPLIPEVSVVATKPL 239
Cdd:PHA03247 2865 RPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24646197   240 AAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVA 307
Cdd:PHA03247 2945 PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
119-401 3.75e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 3.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  119 VAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAPA 198
Cdd:PRK07003 356 LAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  199 VAPVVAETPAPPPVAeipvATIPECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVA 278
Cdd:PRK07003 436 ADRGDDAADGDAPVP----AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDAR 511

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  279 PVSASTEPPVAAATLTTAPETPALAPvvaesqvAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAETTPPVVPPVA 358
Cdd:PRK07003 512 APAAASREDAPAAAAPPAPEARPPTP-------AAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAA 584

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 24646197  359 AESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVP 401
Cdd:PRK07003 585 PKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 110-438 3.83e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.22  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   110 AVSAPVAPPVAATptpVAPIPVAAPViatPPVAASAPTPAAVTPVVSPVIATPPVVPANTtvpvaapvaavpaavpvvap 189
Cdd:PRK10263  315 PITEPVAVAAAAT---TATQSWAAPV---EPVTQTPPVASVDVPPAQPTVAWQPVPGPQT-------------------- 368

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   190 vlapavapavapvvaetpaPPPVaeipVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPVVAPAAAsPHVSVA 269
Cdd:PRK10263  369 -------------------GEPV----IAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQ-PYYAPA 424

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   270 PAVETAVVAPVSASTEPPVAAATLTTAPETPalapvvAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVAET 349
Cdd:PRK10263  425 PEQPAQQPYYAPAPEQPVAGNAWQAEEQQST------FAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEE 498

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   350 TPPVVPP-----------------VAAESIPAPVVATTPVPATLAVtdPDVTASAVPELPPVIAPSPVPSAV------AE 406
Cdd:PRK10263  499 TKPARPPlyyfeeveekrarereqLAAWYQPIPEPVKEPEPIKSSL--KAPSVAAVPPVEAAAAVSPLASGVkkatlaTG 576

                         330       340       350
                  ....*....|....*....|....*....|...
gi 24646197   407 TPVDLAPPVLPPVA-AEPVPAVVAEETPETPAP 438
Cdd:PRK10263  577 AAATVAAPVFSLANsGGPRPQVKEGIGPQLPRP 609
PRK10856 PRK10856
cytoskeleton protein RodZ;
235-317 5.96e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 39.62  E-value: 5.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  235 ATKPLAAAEPVVVAPPATETPVVAPAAASPHVSVAPAVETAVVAPVSASTEP-----PVAAATLTTAPETPALAPVVAES 309
Cdd:PRK10856 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTaatpaPAAPATPDGAAPLPTDQAGVSTP 247


                 ....*...
gi 24646197  310 QVAANTVV 317
Cdd:PRK10856 248 AADPNALV 255
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 98-230 5.97e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.23  E-value: 5.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   98 STPPVAVAQIPVAVSAPVAPPVAAT-PTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIATPPVVPANTTVPVAAP 176
Cdd:PRK07994 374 SAAPAASAQATAAPTAAVAPPQAPAvPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVN 453

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24646197  177 VAAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVAT------------IPECVAPLIPE 230
Cdd:PRK07994 454 SALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATpkalkkalehekTPELAAKLAAE 519
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 209-337 6.15e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 6.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  209 PPPVAEIPVATIPECVAPLIPEVSVVATKPLAAAEPVVVAPPATETPvvAPAAASPHVSVAPAVETAVVAPVSASTEPPV 288
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAAS--APAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 24646197  289 AAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAE 337
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
440-642 6.48e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 6.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  440 SAPVTIAALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVEV 519
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  520 TTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPI 599
Cdd:PRK12323 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 24646197  600 PEPEPSLATPTEPiPVEAPVVIQEAVDAVEVPVTETSTSIPET 642
Cdd:PRK12323 532 ADPDDAFETLAPA-PAAAPAPRAAAATEPVVAPRPPRASASGL 573
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 258-645 6.53e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 6.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  258 APAAASPHVSVAPAVETAVVAPVSASTEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAE 337
Cdd:PRK07764 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  338 TPEVASVAVAETTPPVVPPVAAESIPAPVVATTPVPATLAVTD---PDVTAsAVPELPPVIAPSPVPSAVAETPVD---- 410
Cdd:PRK07764 471 AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRerwPEILA-AVPKRSRKTWAILLPEATVLGVRGdtlv 549

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  411 -------LAPPVLPPVAAEPVPAVVAEETPETPAPAsapvtiaaldipevapVIAAPSDAPAEAPSAAAPIVSTPPTTAS 483
Cdd:PRK07764 550 lgfstggLARRFASPGNAEVLVTALAEELGGDWQVE----------------AVVGPAPGAAGGEGPPAPASSGPPEEAA 613

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  484 VPETTAPPAA-VPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPAVE 562
Cdd:PRK07764 614 RPAAPAAPAApAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  563 AAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPVTETSTSIPET 642
Cdd:PRK07764 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773


                 ...
gi 24646197  643 TEP 645
Cdd:PRK07764 774 PPP 776
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
372-573 6.98e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 39.97  E-value: 6.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  372 VPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDLAPPVLPPV-----AAEPVPAVVAEETPET-PAPASAPVTI 445
Cdd:PRK12727  51 VQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRqrvasAAEDMIAAMALRQPVSvPRQAPAAAPV 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  446 AALDIPEVAPVIAAPSDAPAEAPSAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAV 525
Cdd:PRK12727 131 RAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDD 210

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 24646197  526 ADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSvPAVEAAESTSSPIPE 573
Cdd:PRK12727 211 EQLDDDGFDLDDALPQILPPAALPPIVVAPAA-PAALAAVAAAAPAPQ 257
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 399-528 8.82e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.79  E-value: 8.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  399 PVPSAVAETPVDLAPPVLPPVAAEPVPAVVAEetpeTPAPASAPVTIAALDIPEVAPVIAAPSDAPaeapsaaapivsTP 478
Cdd:PRK14950 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVRP----TPAPSTRPKAAAAANIPPKEPVRETATPPP------------VP 413

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 24646197  479 PTTASVPETTAPPAAVPTEPIDVSVLSEAAIETPVAPPVEVTTEVAVADV 528
Cdd:PRK14950 414 PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
3-259 9.34e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.83  E-value: 9.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197    3 PGTIPSPVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLA-SVQPATVTIPAPAPIAAASVAPVASV 81
Cdd:PRK07003 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEApPAAPAPPATADRGDDAADGDAPVPAK 452

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   82 APPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPVAASAPTPAAVTPVVSPVIAT 161
Cdd:PRK07003 453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEA 532

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  162 PPVVPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIPecvAPLIPEVSVVATKPLAA 241
Cdd:PRK07003 533 RPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRV---AVQVPTPRARAATGDAP 609

                        250
                 ....*....|....*...
gi 24646197  242 AEPVVVAPPATETPVVAP 259
Cdd:PRK07003 610 PNGAARAEQAAESRGAPP 627
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 347-460 9.49e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 9.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197   347 AETTPPVVPPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVDlAPPVLPPVAAEPVPA 426
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA-APPAAAAAAAPAAAA 112

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 24646197   427 VVAEETP-ETPAPASAPVTIAALDIPEVAPVIAAP 460
Cdd:PRK12270  113 VEDEVTPlRGAAAAVAKNMDASLEVPTATSVRAVP 147
PRK10856 PRK10856
cytoskeleton protein RodZ;
355-442 9.81e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 39.24  E-value: 9.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24646197  355 PPVAAESIPAPVVATTPVPATLAVTDPDVTASAVPELPPVIAPSPVPSAVAETPVdlAPPVLPPVAAEPVPAVVAEETpe 434
Cdd:PRK10856 170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPA--PAAPATPDGAAPLPTDQAGVS-- 245


                 ....*...
gi 24646197  435 tpAPASAP 442
Cdd:PRK10856 246 --TPAADP 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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