|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
370-680 |
9.39e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 9.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 370 IQAKLRELRQEVNT-ERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQ 448
Cdd:COG1196 218 LKEELKELEAELLLlKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 449 QDLAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNsifELEQRKQLEAENADLKQELSAVQQTQ 528
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE---AEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 529 SELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQtEALAQKQQELSALRSQVGSLTDAHAQ 608
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE-EALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24647745 609 QQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKnnqqhKELQLQQQKAVAANGGGSASSAKSEQQR 680
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
347-838 |
1.32e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 347 QKLKRQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQMHARNQAY---IDKLQGKEQELAALNQELSSLNDKLTLE 423
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEyelLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 424 RQQLTTLRREKQANSQdlvQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFE 503
Cdd:COG1196 322 EEELAELEEELEELEE---ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 504 LEQRKQLEAENADLKQELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQtE 583
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE-A 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 584 ALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQR--------------------AEQLQAKEQHLQQELQE 643
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavligveaayeaalEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 644 QREKNNQQHKELQLQQQKAVAANGGGSASSAKSEQQRIRDLYQRLYPDAVKAQSGNALQASFDQWLEQVLATHVKQQQDK 723
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 724 LRQKLDAEKSEKQSSSSHKSTQSSNSSSSNHNSTHNNISSNNSSSNSQSSSAAEQQELHKQNLQLRECNDKLTQLVtktt 803
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE---- 713
|
490 500 510
....*....|....*....|....*....|....*
gi 24647745 804 ntLMDLEERAREQDEHWRGIVEQKEQLILTLQQHA 838
Cdd:COG1196 714 --EERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
398-694 |
2.47e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 398 KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEVIQ 477
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 478 QQAQQLQALELQREELEarqnnsifelEQRKQLEAENADLKQELSAVQQTQSELQRVHAA---ELQELRQNLSVLEARNV 554
Cdd:TIGR02168 765 ELEERLEEAEEELAEAE----------AEIEELEAQIEQLKEELKALREALDELRAELTLlneEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 555 ALSQQLTQAAnsavQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKE 634
Cdd:TIGR02168 835 ATERRLEDLE----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 635 QHLQQELQEQREKNNQQHKELQLQQQKavaangggsassAKSEQQRIRDLYQRLYPDAVK 694
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVR------------IDNLQERLSEEYSLTLEEAEA 958
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-633 |
8.80e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 8.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 373 KLRELRQEV-NTERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDL 451
Cdd:TIGR02168 214 RYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 452 AHKEKCLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELE---ARQNNSIFEL-EQRKQLEAENADLKQELSAVQQT 527
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELkEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 528 QSELQRVH---AAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEA--------LAQKQQELSALR 596
Cdd:TIGR02168 374 LEELEEQLetlRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAelkelqaeLEELEEELEELQ 453
|
250 260 270
....*....|....*....|....*....|....*..
gi 24647745 597 SQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-728 |
4.75e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 4.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 490 REELEarqnnsifelEQRKQLEAENADLKQELSAVQQTQSELQRVhaAELQELRQNLSVLEARNVALSQQLTQ--AANSA 567
Cdd:COG4913 619 LAELE----------EELAEAEERLEALEAELDALQERREALQRL--AEYSWDEIDVASAEREIAELEAELERldASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 568 VQATAAQSEQAQVQTEALaqkQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREK 647
Cdd:COG4913 687 LAALEEQLEELEAELEEL---EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 648 NNQQHKELQLQQQKAVAAngggsASSAKSEQQRIRDLYQRLYPDAVK-AQSGNALQASFDQWLEQVLATHVKQQQDKLRQ 726
Cdd:COG4913 764 ERELRENLEERIDALRAR-----LNRAEEELERAMRAFNREWPAETAdLDADLESLPEYLALLDRLEEDGLPEYEERFKE 838
|
..
gi 24647745 727 KL 728
Cdd:COG4913 839 LL 840
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
465-676 |
2.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 465 VNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIfelEQRKQLEAENADLKQELSAVQQTQSELQRVHAAELQELRQ 544
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 545 NLSVLEARN------VALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQS 618
Cdd:COG4942 109 LLRALYRLGrqpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 24647745 619 QLQEAQQRAEQLQAKEQHLQQELQEQREKNNQQHKELQ-----LQQQKAVAANGGGSASSAKS 676
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEaliarLEAEAAAAAERTPAAGFAAL 251
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
490-657 |
3.19e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 490 REELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSELQRVHAA-----ELQELRQNLSVLEARNVALSQQLTQAA 564
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplyqELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 565 NSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQ 644
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170
....*....|...
gi 24647745 645 REKNNQQHKELQL 657
Cdd:COG4717 240 ALEERLKEARLLL 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
372-565 |
6.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 372 AKLRELRQEVNTERAQmhARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDlvQLQHLQQDL 451
Cdd:COG4913 272 AELEYLRAALRLWFAQ--RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD--RLEQLEREI 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 452 AHKEKCLAEMTafvnaetQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSEL 531
Cdd:COG4913 348 ERLERELEERE-------RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
170 180 190
....*....|....*....|....*....|....
gi 24647745 532 QRVHAAELQELRQNLSVLEARNVALSQQLTQAAN 565
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAEALG 454
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
371-615 |
8.85e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 371 QAKLRELRQEVNTERAQMhARNQAYIDKLQgkeQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQdlvQLQHLQQD 450
Cdd:COG4942 26 EAELEQLQQEIAELEKEL-AALKKEEKALL---KQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 451 LAHKEKCLAEMTAfvnaeTQQKNEviqqqaqqlqalELQREELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSE 530
Cdd:COG4942 99 LEAQKEELAELLR-----ALYRLG------------RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 531 LQRVhAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQ 610
Cdd:COG4942 162 LAAL-RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*
gi 24647745 611 KQANA 615
Cdd:COG4942 241 ERTPA 245
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
399-597 |
1.51e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 48.04 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 399 LQGKEQELAALNQELSSLNDKLTLERQQLTTLRRekqansqdlvQLQHLQQDLAHKEKclaemtafvnaetqqkneviqq 478
Cdd:PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQD----------SVANLRASLSAAEA---------------------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 479 qaqqlqalelqreeLEARQNNSIFELE-QRKQLEAENADLKQELSAVQQTQSELQRvhaaELQELRQNLSvlearnvALS 557
Cdd:PRK09039 96 --------------ERSRLQALLAELAgAGAAAEGRAGELAQELDSEKQVSARALA----QVELLNQQIA-------ALR 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 24647745 558 QQLtQAANSAVQATAAQSEQAQVQTE--------ALAQKQQELSALRS 597
Cdd:PRK09039 151 RQL-AALEAALDASEKRDRESQAKIAdlgrrlnvALAQRVQELNRYRS 197
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-626 |
1.89e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 396 IDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQAnSQDLVQLQHLQQDLAhkekclaemtafvnaetqqknev 475
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREA-LQRLAEYSWDEIDVA----------------------- 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 476 iqqqaqqlqaleLQREELEARQnnsifelEQRKQLEAENAD---LKQELSAVQQTQSELQRvhaaELQELRQNLSVLEAR 552
Cdd:COG4913 665 ------------SAEREIAELE-------AELERLDASSDDlaaLEEQLEELEAELEELEE----ELDELKGEIGRLEKE 721
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 24647745 553 NVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQR 626
Cdd:COG4913 722 LEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
425-632 |
2.06e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 425 QQLTTLRREKQANSQDLV--QLQHLQQDLAHKEKCLAE-----MTAFVNAETQQKNEVIQQQAQQLQALELQREELEARQ 497
Cdd:COG3206 163 EQNLELRREEARKALEFLeeQLPELRKELEEAEAALEEfrqknGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 498 NnsifELEQRKQLEAENADLKQELSAVQQTQSELQRVhAAELQELRQNLSV-------LEARNVALSQQLTQAANSAVQA 570
Cdd:COG3206 243 A----ALRAQLGSGPDALPELLQSPVIQQLRAQLAEL-EAELAELSARYTPnhpdviaLRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 24647745 571 TAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
509-633 |
2.11e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 47.65 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 509 QLEAENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLEARNVALSQQLTQAANSAVQATaaqsEQAQVQTEALAQK 588
Cdd:PRK09039 57 RLNSQIAELADLLSLERQGNQDLQ----DSVANLRASLSAAEAERSRLQALLAELAGAGAAAE----GRAGELAQELDSE 128
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 24647745 589 QQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
411-626 |
2.13e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 411 QELSSLNDKLTLERQQLTTLRREKQANSQdlvqLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEviqqqaqqlQALELQR 490
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAER----YAAARERLAELEYLRAALRLWFAQRRLELLE---------AELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 491 EELEARQnnsifelEQRKQLEAENADLKQELSAVQQT--QSELQRVHAAElQELRQNLSVLEARNVALSQQLTQAANSAV 568
Cdd:COG4913 302 AELARLE-------AELERLEARLDALREELDELEAQirGNGGDRLEQLE-REIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24647745 569 QATAAQSEQAQVQTEA---LAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQR 626
Cdd:COG4913 374 PLPASAEEFAALRAEAaalLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
490-726 |
2.22e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.37 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 490 REELEARQNNSIFELEQ-------RKQLEAENADLKQELSA----VQQTQSELQRVHAAELQELRQ---NLSV--LEARN 553
Cdd:PRK11281 51 QKLLEAEDKLVQQDLEQtlalldkIDRQKEETEQLKQQLAQapakLRQAQAELEALKDDNDEETREtlsTLSLrqLESRL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 554 VALSQQLTQA------ANSAVQATAAQSEQAQVQ-TEALAQKQQELSALRSQVGSLTDAHAQQQKQANA----------- 615
Cdd:PRK11281 131 AQTLDQLQNAqndlaeYNSQLVSLQTQPERAQAAlYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAeqallnaqndl 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 616 --------------LQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNQQHKELQLQQQKavaANGGGSASSAKSEQQRI 681
Cdd:PRK11281 211 qrkslegntqlqdlLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDE---AARIQANPLVAQELEIN 287
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 24647745 682 RDLYQRLypdaVKA-QSGNALqasFDQWLEqvlathVKQQQDKLRQ 726
Cdd:PRK11281 288 LQLSQRL----LKAtEKLNTL---TQQNLR------VKNWLDRLTQ 320
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
505-656 |
3.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 505 EQRKQLEAENADLKQELSAVQ-QTQSELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQseqAQVQTE 583
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRlWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI---RGNGGD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 584 ALAQKQQELSALRSQVGSLTDAHAQQQKQANAL--------------QSQLQEAQQRAEQLQAKEQHLQQELQEQREKNN 649
Cdd:COG4913 339 RLEQLEREIERLERELEERERRRARLEALLAALglplpasaeefaalRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
....*..
gi 24647745 650 QQHKELQ 656
Cdd:COG4913 419 RELRELE 425
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
394-633 |
4.58e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 394 AYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDLAHKEKCLAEMTAFVNAETQQKN 473
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 474 EVIQQQAQQLQALELQREELEARQNN---SIFELEQR------KQLEAENADLKQELS----AVQQTQSELQRVHAAE-- 538
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKleeALNDLEARlshsriPEIQAELSKLEEEVSrieaRLREIEQKLNRLTLEKey 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 539 LQELRQNLSV----LEARNVALSQQLtQAANSAVQATAAQSEQAQVqteALAQKQQELSALRSQVGSLTDAHAQQQKQAN 614
Cdd:TIGR02169 831 LEKEIQELQEqridLKEQIKSIEKEI-ENLNGKKEELEEELEELEA---ALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
250
....*....|....*....
gi 24647745 615 ALQSQLQEAQQRAEQLQAK 633
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAK 925
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
398-633 |
1.08e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 398 KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQdlvQLQHLQQDLAHKEKCLAEMTAFVNAETQQKNEviq 477
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR---RIRALEQELAALEAELAELEKEIAELRAELEA--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 478 qqaqqlqalelqREELEARQNNSIFELEQRKQLEA-ENADLKQELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVAL 556
Cdd:COG4942 102 ------------QKEELAELLRALYRLGRQPPLALlLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24647745 557 SQQLTQAAnsavQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAK 633
Cdd:COG4942 170 EAERAELE----ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
374-683 |
2.27e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 374 LRELRQEVNTERAQMHARNQAYID---KLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQD 450
Cdd:pfam15921 477 LRKVVEELTAKKMTLESSERTVSDltaSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 451 LAHKEKCLaemtAFVNAETQQKNEVIQQQAQQLQALELQREELEARQNNSIFELEQRK-----------QLEAENADLKQ 519
Cdd:pfam15921 557 MAEKDKVI----EILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdakirELEARVSDLEL 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 520 ELSAVQQTQSELQRVHAAELQELRQNLSVLEARNVALSqQLTQAANSAVQATAAQSEQAQVQTEALAQK----QQELSAL 595
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN-SLSEDYEVLKRNFRNKSEEMETTTNKLKMQlksaQSELEQT 711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 596 RSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQAKEQ-HLQQELQEQREKNNQQHKELQLQQQKAVAANG----GGS 670
Cdd:pfam15921 712 RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQfLEEAMTNANKEKHFLKEEKNKLSQELSTVATEknkmAGE 791
|
330
....*....|...
gi 24647745 671 ASSAKSEQQRIRD 683
Cdd:pfam15921 792 LEVLRSQERRLKE 804
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
505-632 |
3.05e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 505 EQRKQLEAENADLKQELSAVQQTQSELQRvHAAELQELRQNlsvlearnvaLSQQLTQAANSAVQatAAQSEQAQVQTEA 584
Cdd:PRK00409 527 ELERELEQKAEEAEALLKEAEKLKEELEE-KKEKLQEEEDK----------LLEEAEKEAQQAIK--EAKKEADEIIKEL 593
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 24647745 585 LAQKQQELSALRSQvgSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:PRK00409 594 RQLQKGGYASVKAH--ELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
393-631 |
5.55e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 393 QAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLrreKQANSQDlvqlqhLQQDLAhkekclaemtafvnaetqqk 472
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL---KDDNDEE------TRETLS-------------------- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 473 neviqqqaqqlqalELQREELEARQNNSIFELEQ-RKQLEAENADLkqelsAVQQTQSElqRVHAA------ELQELRQN 545
Cdd:PRK11281 120 --------------TLSLRQLESRLAQTLDQLQNaQNDLAEYNSQL-----VSLQTQPE--RAQAAlyansqRLQQIRNL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 546 LSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEA------LAQKQQELSALRSQvgsltdahaQQQKQANALQS- 618
Cdd:PRK11281 179 LKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGntqlqdLLQKQRDYLTARIQ---------RLEHQLQLLQEa 249
|
250
....*....|....*..
gi 24647745 619 ----QLQEAQQRAEQLQ 631
Cdd:PRK11281 250 inskRLTLSEKTVQEAQ 266
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
498-721 |
6.54e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 498 NNSIFELEQR-----KQLEAENADLKQE----------LSAVQQTQSELQRvhaaELQELRQNLSVLEARNVALSQ-QLT 561
Cdd:PRK10929 101 NMSTDALEQEilqvsSQLLEKSRQAQQEqdrareisdsLSQLPQQQTEARR----QLNEIERRLQTLGTPNTPLAQaQLT 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 562 --QAANSAVQATAAQSEQAQVQtealAQKQQELSALRSQVgsltdahaqQQKQANALQSQLQEAQQraeQLQAKEqhlqq 639
Cdd:PRK10929 177 alQAESAALKALVDELELAQLS----ANNRQELARLRSEL---------AKKRSQQLDAYLQALRN---QLNSQR----- 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 640 elqeqreknnQQHKELQLQQQKAVAANGGGSASSAKSEQQRIRDLYQRLYP-----DAVKAQSGNAlqASFDQWLEQVLA 714
Cdd:PRK10929 236 ----------QREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQqaqrmDLIASQQRQA--ASQTLQVRQALN 303
|
....*..
gi 24647745 715 THVKQQQ 721
Cdd:PRK10929 304 TLREQSQ 310
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
384-656 |
1.10e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.83 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 384 ERAQMHARNQ---AYIDKLQGKEQELAALNQELSSLNDKLTLER--------QQLTTLRRE----KQANSQDLVQLQHLQ 448
Cdd:pfam00038 2 EKEQLQELNDrlaSYIDKVRFLEQQNKLLETKISELRQKKGAEPsrlyslyeKEIEDLRRQldtlTVERARLQLELDNLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 449 QDLAH-KEKCLAEMTAFVNAETQqknevIQQQAQQLQALELQREELEARQNNSIFELEQRKQL-EAENADLKQELSAvQQ 526
Cdd:pfam00038 82 LAAEDfRQKYEDELNLRTSAEND-----LVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNhEEEVRELQAQVSD-TQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 527 TQSELQRVH----AAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSeqaqvqTEALAQKQQELSALRSQVGSL 602
Cdd:pfam00038 156 VNVEMDAARkldlTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARN------GDALRSAKEEITELRRTIQSL 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 24647745 603 TDAHAQQQKQANALQSQLQEAQQR----AEQLQAKEQHLQQELQEQREKNNQQHKELQ 656
Cdd:pfam00038 230 EIELQSLKKQKASLERQLAETEERyelqLADYQELISELEAELQETRQEMARQLREYQ 287
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
496-664 |
1.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 496 RQNNSIFEL-EQRKQLEAENADLKQELSAVQQTQSELQ-RVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAA 573
Cdd:COG3206 202 RQKNGLVDLsEEAKLLLQQLSELESQLAEARAELAEAEaRLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 574 QSEQAQVQTEALAQKQQELSALRSQVGsltdahAQQQKQANALQSQLQEAQQRAEQLQAKEQHLQQELQEQREKNNQQhk 653
Cdd:COG3206 282 LSARYTPNHPDVIALRAQIAALRAQLQ------QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL-- 353
|
170
....*....|.
gi 24647745 654 eLQLQQQKAVA 664
Cdd:COG3206 354 -RRLEREVEVA 363
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
371-625 |
1.73e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 371 QAKLRELRQEVNTERAQMharnqayidklqgkEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQD 450
Cdd:pfam12128 282 QETSAELNQLLRTLDDQW--------------KEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 451 -LAHKEKCLAEMTAFVNAETQQKNEViqqqaqqlQALELQREELEARQNN---SIFELEQRKQLEAENADLKQELSAVQQ 526
Cdd:pfam12128 348 qLPSWQSELENLEERLKALTGKHQDV--------TAKYNRRRSKIKEQNNrdiAGIKDKLAKIREARDRQLAVAEDDLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 527 TQSELQRVHAAELQELRQ----------NLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQkQQELSALR 596
Cdd:pfam12128 420 LESELREQLEAGKLEFNEeeyrlksrlgELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERL-QSELRQAR 498
|
250 260
....*....|....*....|....*....
gi 24647745 597 SQVGSLTDAHAQQQKQANALQSQLQEAQQ 625
Cdd:pfam12128 499 KRRDQASEALRQASRRLEERQSALDELEL 527
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
443-632 |
2.71e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.22 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 443 QLQHLQQDLAHKEKClaemtafVNAETQQKNEVIQQQAQQLQALELQREELEARQNnsifeleQRKQLEAENADLKQELS 522
Cdd:PRK11637 48 QLKSIQQDIAAKEKS-------VRQQQQQRASLLAQLKKQEEAISQASRKLRETQN-------TLNQLNKQIDELNASIA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 523 AVQQTQSELQRVHAAEL-----QELRQNLSVL--------EARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQ 589
Cdd:PRK11637 114 KLEQQQAAQERLLAAQLdaafrQGEHTGLQLIlsgeesqrGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQ 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 24647745 590 QE----LSALRSQVGSLTDAHAQQQKQANALQSQLQEAQQRAEQLQA 632
Cdd:PRK11637 194 SQqktlLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA 240
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
491-703 |
3.60e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.13 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 491 EELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSELQRVhAAELQELRQNLSVLEARnvALSQQLTQAANSaVQA 570
Cdd:pfam13779 516 QELREALDDYMQALAEQAQQNPQDLQQPDDPNAQEMTQQDLQRM-LDRIEELARSGRRAEAQ--QMLSQLQQMLEN-LQA 591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 571 TAAQSEQAQVQTEA---------LAQKQQELS-----------------------ALRSQVGSLTDAHAQQQKQANALQS 618
Cdd:pfam13779 592 GQPQQQQQQGQSEMqqamdelgdLLREQQQLLdetfrqlqqqggqqqgqpgqqgqQGQGQQPGQGGQQPGAQMPPQGGAE 671
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 619 QLQEAQQRAEQLqakeqhlqqelqeqREKNNQQHKELQLQQQKAVAANGGGSASSAKSEQQRIRdlyQRLYPDAVKAQsG 698
Cdd:pfam13779 672 ALGDLAERQQAL--------------RRRLEELQDELKELGGKEPGQALGDAGRAMRDAEEALG---QGDLAGAVDAQ-G 733
|
....*
gi 24647745 699 NALQA 703
Cdd:pfam13779 734 RALEA 738
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
372-629 |
4.37e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 372 AKLRELRQEVNTERAQmHARNQAYIDKLQGKEQELAALNQELSSLndkltleRQQLTTLRREKQAnSQDLVQLQHLQQDL 451
Cdd:COG4717 71 KELKELEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEEL-------REELEKLEKLLQL-LPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 452 AHKEKCLAEMTAFVNAETQQKNEViqqQAQQLQALELQREELEARQNNSIFELEQRKQLEAENADLKQELSAVQQTQSEL 531
Cdd:COG4717 142 AELPERLEELEERLEELRELEEEL---EELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 532 QRvhaaELQELRQNLSVLEARNVALS-QQLTQAANSAVQATAAQSEQAQVQTEALAQKQQELSALRSQVGSLTDAHAQQQ 610
Cdd:COG4717 219 QE----ELEELEEELEQLENELEAAAlEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLA 294
|
250
....*....|....*....
gi 24647745 611 KQANALQSQLQEAQQRAEQ 629
Cdd:COG4717 295 REKASLGKEAEELQALPAL 313
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
372-468 |
4.93e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 372 AKLRELRQEV---NTERAQM-HARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHL 447
Cdd:COG0542 411 EELDELERRLeqlEIEKEALkKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPEL 490
|
90 100
....*....|....*....|.
gi 24647745 448 QQDLAHKEKCLAEMTAFVNAE 468
Cdd:COG0542 491 EKELAELEEELAELAPLLREE 511
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
372-633 |
5.14e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 372 AKLRELRQEVNTERAQMHARNQAYIDKLQGKEQELAALNQELSSLN--DKLTLErQQLTTLRREKQANSQDLVQLQHLQQ 449
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANllADETLA-DRLEELREELDAAQEAQAFIQQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 450 DLAHkekcLAEMTAFVNAETQQKNEVIQQQAQQLQALELQREELEA----RQNNSIFELEQRKQLEAENAD----LKQEL 521
Cdd:COG3096 918 ALAQ----LEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAlsevVQRRPHFSYEDAVGLLGENSDlnekLRARL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 522 SAVQQTQS---ELQRVHAAELQELRQNLSVLEARNVALSQQLTQAANS----AVQATAAQSEQAQVQTEALaqkQQELSA 594
Cdd:COG3096 994 EQAEEARRearEQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEleelGVQADAEAEERARIRRDEL---HEELSQ 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 24647745 595 LRSQVGSLTDAHAQQQKQANALQSQLQEA-----QQRAEQLQAK 633
Cdd:COG3096 1071 NRSRRSQLEKQLTRCEAEMDSLQKRLRKAerdykQEREQVVQAK 1114
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
318-631 |
5.39e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 318 SEIQILIDYLLNKQQDMPASHSEWSDDICQKLKRQLEEKEKLLAEEQEASIGIQAKLRELRQEVNTERAQM-----HARN 392
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqeQARN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 393 Q--AYIDKLQGKEQELAALNQEL-----------SSLNDKLTLERQQLTTLRREKQANSQDL----VQLQHLQQDLAHKE 455
Cdd:pfam15921 311 QnsMYMRQLSDLESTVSQLRSELreakrmyedkiEELEKQLVLANSELTEARTERDQFSQESgnldDQLQKLLADLHKRE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 456 KCLAemtafvnAETQQKNEVIQQQAQQLQALELQREELEARqNNSIFELEQ-RKQLEAE-NADLKQELSAVQQTQSELQR 533
Cdd:pfam15921 391 KELS-------LEKEQNKRLWDRDTGNSITIDHLRRELDDR-NMEVQRLEAlLKAMKSEcQGQMERQMAAIQGKNESLEK 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 534 VHA--AELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQvqteALAQKQQELSALRSQVgsltDAHAQQQK 611
Cdd:pfam15921 463 VSSltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER----AIEATNAEITKLRSRV----DLKLQELQ 534
|
330 340
....*....|....*....|
gi 24647745 612 QANALQSQLQEAQQRAEQLQ 631
Cdd:pfam15921 535 HLKNEGDHLRNVQTECEALK 554
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
372-830 |
5.91e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 372 AKLRELRQEVNTERAQMHARNQAYIDKLQGKEQELAALNQELSSLNDKLTLERQQLTTLRREKQANSQDLVQLQHLQQDL 451
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 452 AHKEKCLAEMTAFVNA----ETQQKNEVIQQQAQQLQALELQRE----ELEARQNNSIFELEQRKQLEAENADLKQELSA 523
Cdd:TIGR00618 267 ARIEELRAQEAVLEETqeriNRARKAAPLAAHIKAVTQIEQQAQrihtELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 524 VQQTQSE------------LQRVHAAELQELRQNLSVLEARNVALSQQLTQAANSAVQATAAQSEQAQVQTEALAQKQQE 591
Cdd:TIGR00618 347 LQTLHSQeihirdahevatSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 592 LSALRSQVGSLTDAHAQQQKQANALQSQ------LQEAQQRAEQLQAKEQHLQQELQEQREKNNQQHKELQLQQQKAVAA 665
Cdd:TIGR00618 427 AHAKKQQELQQRYAELCAAAITCTAQCEklekihLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPL 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 666 NGGGSASSAKSEQQRI-----RDLYQRLYPDAVKAQSGNALQASFDQWLEQvlATHVKQQQDKLRQKLDAEKSEKQSSSS 740
Cdd:TIGR00618 507 CGSCIHPNPARQDIDNpgpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQ--RASLKEQMQEIQQSFSILTQCDNRSKE 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 741 HKSTQSSNSSSSNHNSTHNNISSNNSSSNSQSSSAAEQQELHKQNLQLRECNDKLTQLVTKTTNTLMDLEERAREQDEHW 820
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA 664
|
490
....*....|
gi 24647745 821 RGIVEQKEQL 830
Cdd:TIGR00618 665 LSIRVLPKEL 674
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
376-715 |
8.10e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 376 ELRQEVNTERAQMHARNQAYID---KLQGKEQELAALNQELSSLNDKLTLERqqlTTLRREKQansqdlvqLQHLQQDLA 452
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNLVQ---TALRQQEK--------IERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 453 HKEKCLAEMTAFVnaetqqkneviqqqaqqlqalELQREELEARQNNSIFELEQRKQLEAENADLKQELSaVQQTQSeLQ 532
Cdd:PRK04863 359 ELEERLEEQNEVV---------------------EEADEQQEENEARAEAAEEEVDELKSQLADYQQALD-VQQTRA-IQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 533 RVHAAE-LQELRQ----------NLSVLEARNVALSQQLTQAANSAVQataaqseQAQVQTEALAQKQQELSALRSQVGS 601
Cdd:PRK04863 416 YQQAVQaLERAKQlcglpdltadNAEDWLEEFQAKEQEATEELLSLEQ-------KLSVAQAAHSQFEQAYQLVRKIAGE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 602 LTDAHAQQQ---------------KQANALQSQLQEA------QQRAEQLQAKEQHLQQELQEQREKNNQQHKEL--QLQ 658
Cdd:PRK04863 489 VSRSEAWDVarellrrlreqrhlaEQLQQLRMRLSELeqrlrqQQRAERLLAEFCKRLGKNLDDEDELEQLQEELeaRLE 568
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 24647745 659 QQKAVAANGGGSASSAKSEQQRIRDLYQRLypdAVKAQSGNALQASFDQWLEQVLAT 715
Cdd:PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRL---AARAPAWLAAQDALARLREQSGEE 622
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
513-625 |
9.65e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 39.32 E-value: 9.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24647745 513 ENADLKQELSAVQQTQSELQrvhaAELQELRQNLSVLEARNVALSQQLTQAANSAvqaTAAQSEQAQVQTEALAQKQQEL 592
Cdd:TIGR04320 248 PIPNPPNSLAALQAKLATAQ----ADLAAAQTALNTAQAALTSAQTAYAAAQAAL---ATAQKELANAQAQALQTAQNNL 320
|
90 100 110
....*....|....*....|....*....|...
gi 24647745 593 SALRSQVGSLTDAHAQQQKQANALQSQLQEAQQ 625
Cdd:TIGR04320 321 ATAQAALANAEARLAKAKEALANLNADLAKKQA 353
|
|
| |
