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Conserved domains on  [gi|25155137|ref|NP_741556|]
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Transposase [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIGR02231 super family cl37080
conserved hypothetical protein; This family consists of proteins over 500 amino acids long in ...
 13-44 1.67e-10

conserved hypothetical protein; This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.


The actual alignment was detected with superfamily member TIGR02231:

Pssm-ID: 274045 [Multi-domain]  Cd Length: 525  Bit Score: 53.59  E-value: 1.67e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 25155137    13 EISGITILSDRAEVKRRVPVNLKAGVSEICLK 44
Cdd:TIGR02231   1 KISTVTVYPDRAEVTRSGKVDLPSGVNELVLK 32
 
Name Accession Description Interval E-value
TIGR02231 TIGR02231
conserved hypothetical protein; This family consists of proteins over 500 amino acids long in ...
 13-44 1.67e-10

conserved hypothetical protein; This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.


Pssm-ID: 274045 [Multi-domain]  Cd Length: 525  Bit Score: 53.59  E-value: 1.67e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 25155137    13 EISGITILSDRAEVKRRVPVNLKAGVSEICLK 44
Cdd:TIGR02231   1 KISTVTVYPDRAEVTRSGKVDLPSGVNELVLK 32
DUF4140 pfam13600
N-terminal domain of unknown function (DUF4140); This family is often found at the N-terminus ...
 17-44 9.34e-05

N-terminal domain of unknown function (DUF4140); This family is often found at the N-terminus of its member proteins, with DUF4139, pfam13598, at the C-terminus.


Pssm-ID: 463931 [Multi-domain]  Cd Length: 99  Bit Score: 36.05  E-value: 9.34e-05
                         10        20
                 ....*....|....*....|....*...
gi 25155137   17 ITILSDRAEVKRRVPVNLKAGVSEICLK 44
Cdd:pfam13600  1 VTVYPDRAEVTRTAKVTLKAGTNEVVIT 28
 
Name Accession Description Interval E-value
TIGR02231 TIGR02231
conserved hypothetical protein; This family consists of proteins over 500 amino acids long in ...
 13-44 1.67e-10

conserved hypothetical protein; This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.


Pssm-ID: 274045 [Multi-domain]  Cd Length: 525  Bit Score: 53.59  E-value: 1.67e-10
                          10        20        30
                  ....*....|....*....|....*....|..
gi 25155137    13 EISGITILSDRAEVKRRVPVNLKAGVSEICLK 44
Cdd:TIGR02231   1 KISTVTVYPDRAEVTRSGKVDLPSGVNELVLK 32
DUF4140 pfam13600
N-terminal domain of unknown function (DUF4140); This family is often found at the N-terminus ...
 17-44 9.34e-05

N-terminal domain of unknown function (DUF4140); This family is often found at the N-terminus of its member proteins, with DUF4139, pfam13598, at the C-terminus.


Pssm-ID: 463931 [Multi-domain]  Cd Length: 99  Bit Score: 36.05  E-value: 9.34e-05
                         10        20
                 ....*....|....*....|....*...
gi 25155137   17 ITILSDRAEVKRRVPVNLKAGVSEICLK 44
Cdd:pfam13600  1 VTVYPDRAEVTRTAKVTLKAGTNEVVIT 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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