NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|87299624|ref|NP_780484|]
View 

centlein isoform 1 [Mus musculus]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000095)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
523-1297 2.14e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 78.56  E-value: 2.14e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    523 KLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDsgmaesRQMKRAEPHQLRQEdSD 602
Cdd:TIGR02168  247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ------KQILRERLANLERQ-LE 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    603 AVWNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELN--RCMAEKREEQLFRQHEDAEVKKSTPEKNEKAIS 680
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEaeLEELESRLEELEEQLETLRSKVAQLELQIASLN 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    681 EEtlqkVIELENRLKSFEKNSRKLKEESKRLKKEndFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITAL 760
Cdd:TIGR02168  400 NE----IERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    761 ETEVTTLRRQVTEAKALRGKDEEVvcpEERAHRPTDKAKSEMATTDVRARRCDCKTATTKV--KFKAAKRK-CSVGRHHT 837
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERL---QENLEGFSEGVKALLKNQSGLSGILGVLSELISVdeGYEAAIEAaLGGRLQAV 550
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    838 VLNHSIKVMSHVENLSKdgwedvsegSDSETQTFQNLGTI----IVETSQNISPIEDGRNQKEIDQTEGSCAQQRAMQ-- 911
Cdd:TIGR02168  551 VVENLNAAKKAIAFLKQ---------NELGRVTFLPLDSIkgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyl 621
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    912 ---TYSCEDIKAPQSIShNKNTKKMTFQKKSGSLQKSLHSALPARVNREkcknlpaqkssSSTISLRERIVSLQQQNSLL 988
Cdd:TIGR02168  622 lggVLVVDDLDNALELA-KKLRPGYRIVTLDGDLVRPGGVITGGSAKTN-----------SSILERRREIEELEEKIEEL 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    989 QNARRAAEASAKEYKEANEKLLHQQQVSDHRFQTSRQTIKKLTLDLAELRKEKEDLLKKVESSSDIMSLAEEVSRIMAPQ 1068
Cdd:TIGR02168  690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1069 IKVTTLGPSRSMDlEMKQLQCKLKNATNELTKQSSNVKSLRMELLAKDDHIKEMHERTSRMERDITMKRHLIEDLKFRQK 1148
Cdd:TIGR02168  770 LEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1149 VNSESNESFNEMLETLEKKVKSLTEEcsnkkvsvdslkqrLNVAVKEKSQYEQMYQKTKEELEKKDlkmsvliSKLNDTE 1228
Cdd:TIGR02168  849 ELSEDIESLAAEIEELEELIEELESE--------------LEALLNERASLEEALALLRSELEELS-------EELRELE 907
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87299624   1229 TAMAQIETAASEqLQGLALQSEQVLEGAQKKLLSANEKI-EEFTV---FVKALVNELQSDVHGTRHQIRELKK 1297
Cdd:TIGR02168  908 SKRSELRRELEE-LREKLAQLELRLEGLEVRIDNLQERLsEEYSLtleEAEALENKIEDDEEEARRRLKRLEN 979
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
131-783 2.29e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.48  E-value: 2.29e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    131 RRLQATNPDLTQTVSLVVEREKQKSEAKDRkvleiLQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCD 210
Cdd:TIGR02168  260 AELQELEEKLEELRLEVSELEEEIEELQKE-----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    211 LQKKFKDKSQEVKDAKECVQSKEEQN----------RLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDT 280
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELeeleaeleelESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    281 RVKVLEENLIEAKKEIESAQTKynVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNM 360
Cdd:TIGR02168  415 RRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    361 DTQKVLRNQEDVHT--AESMSYQKLYNELHMCF--------ETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQ 430
Cdd:TIGR02168  493 SLERLQENLEGFSEgvKALLKNQSGLSGILGVLselisvdeGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGR 572
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    431 GTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEIEYLQKKLKVANEKLMANRSCDQDFSEkGTEGKHKEPP-------- 502
Cdd:TIGR02168  573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDN-ALELAKKLRPgyrivtld 651
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    503 ---VKRSRSLSPKSSFMGSEEL---RKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLqmlhtnyravkEQLKQW 576
Cdd:TIGR02168  652 gdlVRPGGVITGGSAKTNSSILerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-----------EQLRKE 720
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    577 EEDSGMAESRQMKRAEPHQLRQEDSDAVWNELayfKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREE 656
Cdd:TIGR02168  721 LEELSRQISALRKDLARLEAEVEQLEERIAQL---SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    657 qlFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKEL 736
Cdd:TIGR02168  798 --LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*..
gi 87299624    737 EQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAKALRGKDEE 783
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
523-1297 2.14e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 78.56  E-value: 2.14e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    523 KLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDsgmaesRQMKRAEPHQLRQEdSD 602
Cdd:TIGR02168  247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ------KQILRERLANLERQ-LE 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    603 AVWNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELN--RCMAEKREEQLFRQHEDAEVKKSTPEKNEKAIS 680
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEaeLEELESRLEELEEQLETLRSKVAQLELQIASLN 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    681 EEtlqkVIELENRLKSFEKNSRKLKEESKRLKKEndFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITAL 760
Cdd:TIGR02168  400 NE----IERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    761 ETEVTTLRRQVTEAKALRGKDEEVvcpEERAHRPTDKAKSEMATTDVRARRCDCKTATTKV--KFKAAKRK-CSVGRHHT 837
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERL---QENLEGFSEGVKALLKNQSGLSGILGVLSELISVdeGYEAAIEAaLGGRLQAV 550
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    838 VLNHSIKVMSHVENLSKdgwedvsegSDSETQTFQNLGTI----IVETSQNISPIEDGRNQKEIDQTEGSCAQQRAMQ-- 911
Cdd:TIGR02168  551 VVENLNAAKKAIAFLKQ---------NELGRVTFLPLDSIkgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyl 621
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    912 ---TYSCEDIKAPQSIShNKNTKKMTFQKKSGSLQKSLHSALPARVNREkcknlpaqkssSSTISLRERIVSLQQQNSLL 988
Cdd:TIGR02168  622 lggVLVVDDLDNALELA-KKLRPGYRIVTLDGDLVRPGGVITGGSAKTN-----------SSILERRREIEELEEKIEEL 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    989 QNARRAAEASAKEYKEANEKLLHQQQVSDHRFQTSRQTIKKLTLDLAELRKEKEDLLKKVESSSDIMSLAEEVSRIMAPQ 1068
Cdd:TIGR02168  690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1069 IKVTTLGPSRSMDlEMKQLQCKLKNATNELTKQSSNVKSLRMELLAKDDHIKEMHERTSRMERDITMKRHLIEDLKFRQK 1148
Cdd:TIGR02168  770 LEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1149 VNSESNESFNEMLETLEKKVKSLTEEcsnkkvsvdslkqrLNVAVKEKSQYEQMYQKTKEELEKKDlkmsvliSKLNDTE 1228
Cdd:TIGR02168  849 ELSEDIESLAAEIEELEELIEELESE--------------LEALLNERASLEEALALLRSELEELS-------EELRELE 907
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87299624   1229 TAMAQIETAASEqLQGLALQSEQVLEGAQKKLLSANEKI-EEFTV---FVKALVNELQSDVHGTRHQIRELKK 1297
Cdd:TIGR02168  908 SKRSELRRELEE-LREKLAQLELRLEGLEVRIDNLQERLsEEYSLtleEAEALENKIEDDEEEARRRLKRLEN 979
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
131-783 2.29e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.48  E-value: 2.29e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    131 RRLQATNPDLTQTVSLVVEREKQKSEAKDRkvleiLQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCD 210
Cdd:TIGR02168  260 AELQELEEKLEELRLEVSELEEEIEELQKE-----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    211 LQKKFKDKSQEVKDAKECVQSKEEQN----------RLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDT 280
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELeeleaeleelESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    281 RVKVLEENLIEAKKEIESAQTKynVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNM 360
Cdd:TIGR02168  415 RRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    361 DTQKVLRNQEDVHT--AESMSYQKLYNELHMCF--------ETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQ 430
Cdd:TIGR02168  493 SLERLQENLEGFSEgvKALLKNQSGLSGILGVLselisvdeGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGR 572
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    431 GTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEIEYLQKKLKVANEKLMANRSCDQDFSEkGTEGKHKEPP-------- 502
Cdd:TIGR02168  573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDN-ALELAKKLRPgyrivtld 651
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    503 ---VKRSRSLSPKSSFMGSEEL---RKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLqmlhtnyravkEQLKQW 576
Cdd:TIGR02168  652 gdlVRPGGVITGGSAKTNSSILerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-----------EQLRKE 720
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    577 EEDSGMAESRQMKRAEPHQLRQEDSDAVWNELayfKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREE 656
Cdd:TIGR02168  721 LEELSRQISALRKDLARLEAEVEQLEERIAQL---SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    657 qlFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKEL 736
Cdd:TIGR02168  798 --LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*..
gi 87299624    737 EQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAKALRGKDEE 783
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
154-741 5.71e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.72  E-value: 5.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  154 KSEAKDRKVLEILqvkdSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCDLQKKFKDKSQEVKDAKECVQSKE 233
Cdd:COG1196  219 KEELKELEAELLL----LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  234 EQNRLVIKNLEEENERLRtrctDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQLNNK 313
Cdd:COG1196  295 AELARLEQDIARLEERRR----ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  314 QAELLQKDMDITLIRKELQELQN---VYKQNSAHTAQQADLIQQLQALNMDTQKVLRNQEDVHTAESMSYQKLYNELHMC 390
Cdd:COG1196  371 EAELAEAEEELEELAEELLEALRaaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  391 FETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESqgtAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEI----- 465
Cdd:COG1196  451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA---AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagava 527
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  466 ------EYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKE-----------PPVKRSRSLSPKSSFMGSEELRKLKKAE 528
Cdd:COG1196  528 vligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVASD 607
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  529 RKIENLEKTLQLKS-QENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPHQLRQEDSDAVWNE 607
Cdd:COG1196  608 LREADARYYVLGDTlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  608 LAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTPEKNEKAI-SEETLQK 686
Cdd:COG1196  688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpDLEELER 767
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87299624  687 VIE-LENRLKSFEK-NSRKLkEESKRLKKENDFLKSHLkhyqEDSEAREKELEQLLR 741
Cdd:COG1196  768 ELErLEREIEALGPvNLLAI-EEYEELEERYDFLSEQR----EDLEEARETLEEAIE 819
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1147-1269 2.69e-05

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 48.67  E-value: 2.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1147 QKVNSESNESFNEM---LETLEKKVKSLTEECSNKKVSVDSLKQRLNvavKEKSQYEQMYQKTKEELEKKdLKMSVLISK 1223
Cdd:PRK00409  508 KKLIGEDKEKLNELiasLEELERELEQKAEEAEALLKEAEKLKEELE---EKKEKLQEEEDKLLEEAEKE-AQQAIKEAK 583
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 87299624  1224 lndtETAMAQIETAASEQLQGLALQSEQVLEGAQKKLLSANEKIEE 1269
Cdd:PRK00409  584 ----KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625
PRK11281 PRK11281
mechanosensitive channel MscK;
153-358 4.07e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 48.37  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   153 QKSEAKDRKVLEilQVKDSKIQELEQTESVLKQelhdlvklKTLVDEENAFLRKELCDLQKKFKdksqevkdakecvQSK 232
Cdd:PRK11281   44 QLDALNKQKLLE--AEDKLVQQDLEQTLALLDK--------IDRQKEETEQLKQQLAQAPAKLR-------------QAQ 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   233 EEQNRLVIKNLEEENERLRTRC-TDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQLN 311
Cdd:PRK11281  101 AELEALKDDNDEETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87299624   312 NK---------------QAELLQKDMDITLIRKELQ---ELQNVY-KQNSAHTAQQADLIQQLQAL 358
Cdd:PRK11281  181 GGkvggkalrpsqrvllQAEQALLNAQNDLQRKSLEgntQLQDLLqKQRDYLTARIQRLEHQLQLL 246
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
385-805 2.23e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 2.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    385 NELHmcfettKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSE 464
Cdd:pfam15921   98 NELH------EKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQ 171
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    465 IEYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKEPPVK--RSRSLSPKSSFMGSE---ELRKLKKAERKIENLEKTLQ 539
Cdd:pfam15921  172 IEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMStmHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEALK 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    540 LKSQENDE-LRDAHEKRKERLQMLHTnyravkeqlkqwEEDSGMAESRQMKRAEPHQLRQEdsdavwNELAYFKRENQEL 618
Cdd:pfam15921  252 SESQNKIElLLQQHQDRIEQLISEHE------------VEITGLTEKASSARSQANSIQSQ------LEIIQEQARNQNS 313
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    619 MVQKmtlqdELDELKMHMSIDKTTIQELNRcMAEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFE 698
Cdd:pfam15921  314 MYMR-----QLSDLESTVSQLRSELREAKR-MYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH 387
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    699 KNSRKL---KEESKRL---KKENDFLKSHLKHYQEDSEAREKELEQLLRVSKD-----VEHDKSELQTKITALEtEVTTL 767
Cdd:pfam15921  388 KREKELsleKEQNKRLwdrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSecqgqMERQMAAIQGKNESLE-KVSSL 466
                          410       420       430
                   ....*....|....*....|....*....|....*...
gi 87299624    768 RRQVTEAKALRGKDEEVVCPEERAHRPTDKAKSEMATT 805
Cdd:pfam15921  467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
148-775 5.75e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.33  E-value: 5.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    148 VEREKQKSEAKDRKVLEILQVKDSKIQELE-QTESVLKQELHDLVKLKTLVDEENAflRKELCDLQKKFKDKSQEVKDAK 226
Cdd:pfam05483   97 IEAELKQKENKLQENRKIIEAQRKAIQELQfENEKVSLKLEEEIQENKDLIKENNA--TRHLCNLLKETCARSAEKTKKY 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    227 EcvqSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSvdtRVKVLEEnliEAKKEIESAQTKYNVV 306
Cdd:pfam05483  175 E---YEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHE---KIQHLEE---EYKKEINDKEKQVSLL 245
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    307 SQQLNNKQaellQKDMDITLIRKElqelqnvykqnSAHTAQQADLIQQLQALNMdtqKVLRNQEDVHTAEsmsyqklYNE 386
Cdd:pfam05483  246 LIQITEKE----NKMKDLTFLLEE-----------SRDKANQLEEKTKLQDENL---KELIEKKDHLTKE-------LED 300
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    387 LHMCFETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDsdsshsgKAPLSTLETLMISQKSEIE 466
Cdd:pfam05483  301 IKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEF-------EATTCSLEELLRTEQQRLE 373
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    467 YLQKKLKVANEKLMaNRSCDQDFSEKGTEGKHKEppvkrsrsLSPKSSFMGSEElrKLKKAERKIENLEKTLQLKSQEND 546
Cdd:pfam05483  374 KNEDQLKIITMELQ-KKSSELEEMTKFKNNKEVE--------LEELKKILAEDE--KLLDEKKQFEKIAEELKGKEQELI 442
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    547 ELRDAHEKRKERLQMLHTNYRAVKEQ-LKQWEEDSGMAESRQMKRAEphqlrqedsdavwnelayFKRENQELMVQKMTL 625
Cdd:pfam05483  443 FLLQAREKEIHDLEIQLTAIKTSEEHyLKEVEDLKTELEKEKLKNIE------------------LTAHCDKLLLENKEL 504
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    626 QDELDELKMHMsidKTTIQELNRCmaEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKNSRKLK 705
Cdd:pfam05483  505 TQEASDMTLEL---KKHQEDIINC--KKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIE 579
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    706 EESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAK 775
Cdd:pfam05483  580 YEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
519-784 3.07e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 3.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  519 EELR-KLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEdsgmaesrqmkraephqlr 597
Cdd:COG1196  270 EELRlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE------------------- 330
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  598 qedsdavwnELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTpeknek 677
Cdd:COG1196  331 ---------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA------ 395
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  678 aisEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKI 757
Cdd:COG1196  396 ---AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
                        250       260
                 ....*....|....*....|....*..
gi 87299624  758 TALETEVTTLRRQVTEAKALRGKDEEV 784
Cdd:COG1196  473 ALLEAALAELLEELAEAAARLLLLLEA 499
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
523-1297 2.14e-14

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 78.56  E-value: 2.14e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    523 KLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDsgmaesRQMKRAEPHQLRQEdSD 602
Cdd:TIGR02168  247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ------KQILRERLANLERQ-LE 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    603 AVWNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELN--RCMAEKREEQLFRQHEDAEVKKSTPEKNEKAIS 680
Cdd:TIGR02168  320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEaeLEELESRLEELEEQLETLRSKVAQLELQIASLN 399
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    681 EEtlqkVIELENRLKSFEKNSRKLKEESKRLKKEndFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITAL 760
Cdd:TIGR02168  400 NE----IERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    761 ETEVTTLRRQVTEAKALRGKDEEVvcpEERAHRPTDKAKSEMATTDVRARRCDCKTATTKV--KFKAAKRK-CSVGRHHT 837
Cdd:TIGR02168  474 EQALDAAERELAQLQARLDSLERL---QENLEGFSEGVKALLKNQSGLSGILGVLSELISVdeGYEAAIEAaLGGRLQAV 550
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    838 VLNHSIKVMSHVENLSKdgwedvsegSDSETQTFQNLGTI----IVETSQNISPIEDGRNQKEIDQTEGSCAQQRAMQ-- 911
Cdd:TIGR02168  551 VVENLNAAKKAIAFLKQ---------NELGRVTFLPLDSIkgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyl 621
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    912 ---TYSCEDIKAPQSIShNKNTKKMTFQKKSGSLQKSLHSALPARVNREkcknlpaqkssSSTISLRERIVSLQQQNSLL 988
Cdd:TIGR02168  622 lggVLVVDDLDNALELA-KKLRPGYRIVTLDGDLVRPGGVITGGSAKTN-----------SSILERRREIEELEEKIEEL 689
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    989 QNARRAAEASAKEYKEANEKLLHQQQVSDHRFQTSRQTIKKLTLDLAELRKEKEDLLKKVESSSDIMSLAEEVSRIMAPQ 1068
Cdd:TIGR02168  690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1069 IKVTTLGPSRSMDlEMKQLQCKLKNATNELTKQSSNVKSLRMELLAKDDHIKEMHERTSRMERDITMKRHLIEDLKFRQK 1148
Cdd:TIGR02168  770 LEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1149 VNSESNESFNEMLETLEKKVKSLTEEcsnkkvsvdslkqrLNVAVKEKSQYEQMYQKTKEELEKKDlkmsvliSKLNDTE 1228
Cdd:TIGR02168  849 ELSEDIESLAAEIEELEELIEELESE--------------LEALLNERASLEEALALLRSELEELS-------EELRELE 907
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87299624   1229 TAMAQIETAASEqLQGLALQSEQVLEGAQKKLLSANEKI-EEFTV---FVKALVNELQSDVHGTRHQIRELKK 1297
Cdd:TIGR02168  908 SKRSELRRELEE-LREKLAQLELRLEGLEVRIDNLQERLsEEYSLtleEAEALENKIEDDEEEARRRLKRLEN 979
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
131-783 2.29e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.48  E-value: 2.29e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    131 RRLQATNPDLTQTVSLVVEREKQKSEAKDRkvleiLQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCD 210
Cdd:TIGR02168  260 AELQELEEKLEELRLEVSELEEEIEELQKE-----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    211 LQKKFKDKSQEVKDAKECVQSKEEQN----------RLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDT 280
Cdd:TIGR02168  335 LAEELAELEEKLEELKEELESLEAELeeleaeleelESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    281 RVKVLEENLIEAKKEIESAQTKynVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNM 360
Cdd:TIGR02168  415 RRERLQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    361 DTQKVLRNQEDVHT--AESMSYQKLYNELHMCF--------ETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQ 430
Cdd:TIGR02168  493 SLERLQENLEGFSEgvKALLKNQSGLSGILGVLselisvdeGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGR 572
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    431 GTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEIEYLQKKLKVANEKLMANRSCDQDFSEkGTEGKHKEPP-------- 502
Cdd:TIGR02168  573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDN-ALELAKKLRPgyrivtld 651
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    503 ---VKRSRSLSPKSSFMGSEEL---RKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLqmlhtnyravkEQLKQW 576
Cdd:TIGR02168  652 gdlVRPGGVITGGSAKTNSSILerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL-----------EQLRKE 720
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    577 EEDSGMAESRQMKRAEPHQLRQEDSDAVWNELayfKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREE 656
Cdd:TIGR02168  721 LEELSRQISALRKDLARLEAEVEQLEERIAQL---SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    657 qlFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKEL 736
Cdd:TIGR02168  798 --LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*..
gi 87299624    737 EQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAKALRGKDEE 783
Cdd:TIGR02168  876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
154-741 5.71e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 60.72  E-value: 5.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  154 KSEAKDRKVLEILqvkdSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCDLQKKFKDKSQEVKDAKECVQSKE 233
Cdd:COG1196  219 KEELKELEAELLL----LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  234 EQNRLVIKNLEEENERLRtrctDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQLNNK 313
Cdd:COG1196  295 AELARLEQDIARLEERRR----ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  314 QAELLQKDMDITLIRKELQELQN---VYKQNSAHTAQQADLIQQLQALNMDTQKVLRNQEDVHTAESMSYQKLYNELHMC 390
Cdd:COG1196  371 EAELAEAEEELEELAEELLEALRaaaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  391 FETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESqgtAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEI----- 465
Cdd:COG1196  451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA---AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLagava 527
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  466 ------EYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKE-----------PPVKRSRSLSPKSSFMGSEELRKLKKAE 528
Cdd:COG1196  528 vligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVASD 607
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  529 RKIENLEKTLQLKS-QENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPHQLRQEDSDAVWNE 607
Cdd:COG1196  608 LREADARYYVLGDTlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  608 LAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTPEKNEKAI-SEETLQK 686
Cdd:COG1196  688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpDLEELER 767
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 87299624  687 VIE-LENRLKSFEK-NSRKLkEESKRLKKENDFLKSHLkhyqEDSEAREKELEQLLR 741
Cdd:COG1196  768 ELErLEREIEALGPvNLLAI-EEYEELEERYDFLSEQR----EDLEEARETLEEAIE 819
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
149-773 3.55e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 55.07  E-value: 3.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    149 EREKQKSEAKDRKVLEILQVKDSKIQELEQTESVLKQELHDL-VKLKTLVDEENAFLRKELCDL-------QKKFKDKSQ 220
Cdd:TIGR02169  236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEQLRVKEKIGELeaeiaslERSIAEKER 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    221 EVKDAKECVQSKEEQ---NRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIE 297
Cdd:TIGR02169  316 ELEDAEERLAKLEAEidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    298 SAQTKYNVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNMDTQKVLRNQEDVHTAES 377
Cdd:TIGR02169  396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    378 MSYQKLYNELHMC------FETT-----------KSNEVMLR---QSVVNLQGQLFQKEQENVK---------LKEKLEE 428
Cdd:TIGR02169  476 EEYDRVEKELSKLqrelaeAEAQaraseervrggRAVEEVLKasiQGVHGTVAQLGSVGERYATaievaagnrLNNVVVE 555
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    429 SQGTAPSlSPHDSDSSHSGKAPLSTLETLMISQKSE---------------IEYLQKKLKV---------------ANEK 478
Cdd:TIGR02169  556 DDAVAKE-AIELLKRRKAGRATFLPLNKMRDERRDLsilsedgvigfavdlVEFDPKYEPAfkyvfgdtlvvedieAARR 634
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    479 LMANR---SCDQDFSEKG---TEGKHKEP-PVKRSRSLSPKSSFMgSEELRKLKKA-ERKIENLEKTLQLKSQENDELRD 550
Cdd:TIGR02169  635 LMGKYrmvTLEGELFEKSgamTGGSRAPRgGILFSRSEPAELQRL-RERLEGLKRElSSLQSELRRIENRLDELSQELSD 713
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    551 AHEKRKE---RLQMLHTNYRAVKEQLKQWEED-----SGMAESRQMKRAEPHQLRQEDSDAVWNELAYFKRENQELMVQK 622
Cdd:TIGR02169  714 ASRKIGEiekEIEQLEQEEEKLKERLEELEEDlssleQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    623 MTLQDELDELK-MHMSIDKTTI---QELNRCMAEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVI-ELENRLKSF 697
Cdd:TIGR02169  794 PEIQAELSKLEeEVSRIEARLReieQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKeELEEELEEL 873
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87299624    698 EKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLlrvskdvEHDKSELQTKITALETEVTTLRRQVTE 773
Cdd:TIGR02169  874 EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK-------RKRLSELKAKLEALEEELSEIEDPKGE 942
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
151-689 1.06e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.32  E-value: 1.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  151 EKQKSEAKDRKVLEILQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCDLQKKFKDKSQEVKDAKE--- 227
Cdd:COG1196  289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEall 368
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  228 CVQSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVS 307
Cdd:COG1196  369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  308 QQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNMDTQKVLRNQEDVHTAESMS--YQKLYN 385
Cdd:COG1196  449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglAGAVAV 528
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  386 ELHMCFETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEI 465
Cdd:COG1196  529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  466 EYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKEPPVKRSRSLSPKSSFMGSEELRKLKKAERKIENLEKTLQLKSQEN 545
Cdd:COG1196  609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  546 DELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPHQLRQEDSDAVWNELAYfkrENQELMVQKMTL 625
Cdd:COG1196  689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL---EELPEPPDLEEL 765
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 87299624  626 QDELDELKMHM----SIDKTTIQELNRcmAEKREEQLFRQHEDAevkkstpeknEKAIseETLQKVIE 689
Cdd:COG1196  766 ERELERLEREIealgPVNLLAIEEYEE--LEERYDFLSEQREDL----------EEAR--ETLEEAIE 819
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1147-1269 2.69e-05

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 48.67  E-value: 2.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1147 QKVNSESNESFNEM---LETLEKKVKSLTEECSNKKVSVDSLKQRLNvavKEKSQYEQMYQKTKEELEKKdLKMSVLISK 1223
Cdd:PRK00409  508 KKLIGEDKEKLNELiasLEELERELEQKAEEAEALLKEAEKLKEELE---EKKEKLQEEEDKLLEEAEKE-AQQAIKEAK 583
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 87299624  1224 lndtETAMAQIETAASEQLQGLALQSEQVLEGAQKKLLSANEKIEE 1269
Cdd:PRK00409  584 ----KEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625
PRK11281 PRK11281
mechanosensitive channel MscK;
153-358 4.07e-05

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 48.37  E-value: 4.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   153 QKSEAKDRKVLEilQVKDSKIQELEQTESVLKQelhdlvklKTLVDEENAFLRKELCDLQKKFKdksqevkdakecvQSK 232
Cdd:PRK11281   44 QLDALNKQKLLE--AEDKLVQQDLEQTLALLDK--------IDRQKEETEQLKQQLAQAPAKLR-------------QAQ 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   233 EEQNRLVIKNLEEENERLRTRC-TDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQLN 311
Cdd:PRK11281  101 AELEALKDDNDEETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87299624   312 NK---------------QAELLQKDMDITLIRKELQ---ELQNVY-KQNSAHTAQQADLIQQLQAL 358
Cdd:PRK11281  181 GGkvggkalrpsqrvllQAEQALLNAQNDLQRKSLEgntQLQDLLqKQRDYLTARIQRLEHQLQLL 246
PTZ00121 PTZ00121
MAEBL; Provisional
519-1347 7.29e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.44  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   519 EELRKLKKAeRKIENLEKTLQLKSQEndELRDAHEKRKERLQMLHTNYRAVkEQLKQWEEDSGMAESRQMKRAEPHQLRQ 598
Cdd:PTZ00121 1167 EEARKAEDA-KKAEAARKAEEVRKAE--ELRKAEDARKAEAARKAEEERKA-EEARKAEDAKKAEAVKKAEEAKKDAEEA 1242
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   599 EDSDAVWNELAYFKRENQELMVQKMTLQDELDElkmhmsiDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTPEKNEKA 678
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-------EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   679 ISEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLR----VSKDVEHDKSELQ 754
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKkadaAKKKAEEKKKADE 1395
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   755 TKITALET-----EVTTLRRQVTEAKALRGKDEEVVCPEERAHRPTDKAKSEMATtdvrarrcdcKTATTKVKFKAAKRK 829
Cdd:PTZ00121 1396 AKKKAEEDkkkadELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK----------KKAEEAKKAEEAKKK 1465
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   830 CSVGRHHTVLNHSIKVMSHVENLSKDGWEDVSEGSDSETQTfqnlgtiivETSQNISPIEDGRNQKEIDQTEGSCAQQRA 909
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA---------EAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   910 MQTYSCEDIKAPQSISHNKNTKKMTFQKKSGSLQKSlhsalparvnrEKCKNLPAQKSSSSTISLRERIVSLQQQNSLLQ 989
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA-----------EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   990 NARRAAEASAKEYKEANEKLLHQQQVsdhrfqtsRQTIKKLTLDLAELRKEKEDLLKkvesssdimslAEEVSRIMAPQI 1069
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEE--------KKKVEQLKKKEAEEKKKAEELKK-----------AEEENKIKAAEE 1666
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1070 KvttlgpsRSMDLEMKQLQcklknatnELTKQSSNVKSLRMELLAKDDHIKEMHERTSRMERDITMKrhliEDLKFRQKV 1149
Cdd:PTZ00121 1667 A-------KKAEEDKKKAE--------EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA----EELKKAEEE 1727
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1150 NSESNESFNEMLETLEKKVKSLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMyqkTKEELEKKDLKMSVLISKlndtet 1229
Cdd:PTZ00121 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV---IEEELDEEDEKRRMEVDK------ 1798
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1230 amaqietaaseQLQGLALQSEQVLEGAQKKLLSANEKIEEFTVFVKALVNELQSdvhgTRHQIRELKKMQKSRHACKTST 1309
Cdd:PTZ00121 1799 -----------KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM----QLEEADAFEKHKFNKNNENGED 1863
                         810       820       830
                  ....*....|....*....|....*....|....*...
gi 87299624  1310 HKAQTLAASILNISRSDLEEILDTEDELEIEKTKIDIE 1347
Cdd:PTZ00121 1864 GNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIERE 1901
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
150-783 1.67e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 46.21  E-value: 1.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    150 REKQKSEAKDRKVLEILQVKDSKIQELEQTESVLKQELHDLVKLktlVDEENAFLRKELCDLQKKFKDKSQEVKDAKECV 229
Cdd:TIGR02169  230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL---LEELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    230 QSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEE---------------------N 288
Cdd:TIGR02169  307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEeledlraeleevdkefaetrdE 386
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    289 LIEAKKEIESAQTKYNVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKQNSAHTAQQADLIQQLQALNMDTQKVLRN 368
Cdd:TIGR02169  387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    369 QEDVHTAESMSYQKLYNELHMC------FETT-----------KSNEVMLR---QSVVNLQGQLFQKEQENVK------- 421
Cdd:TIGR02169  467 YEQELYDLKEEYDRVEKELSKLqrelaeAEAQaraseervrggRAVEEVLKasiQGVHGTVAQLGSVGERYATaievaag 546
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    422 --LKEKLEESQGTAPSlSPHDSDSSHSGKAPLSTLETLMISQKSE---------------IEYLQKKLKV---------- 474
Cdd:TIGR02169  547 nrLNNVVVEDDAVAKE-AIELLKRRKAGRATFLPLNKMRDERRDLsilsedgvigfavdlVEFDPKYEPAfkyvfgdtlv 625
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    475 -----ANEKLMANR---SCDQDFSEKG---TEGKHKEP-PVKRSRSLSPKSSFMgSEELRKLKKA-ERKIENLEKTLQLK 541
Cdd:TIGR02169  626 vedieAARRLMGKYrmvTLEGELFEKSgamTGGSRAPRgGILFSRSEPAELQRL-RERLEGLKRElSSLQSELRRIENRL 704
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    542 SQENDELRDAHEKRKE---RLQMLHTNYRAVKEQLKQWEEDSgmaesrqmkraephQLRQEDSDAVWNELAYFKRENQEL 618
Cdd:TIGR02169  705 DELSQELSDASRKIGEiekEIEQLEQEEEKLKERLEELEEDL--------------SSLEQEIENVKSELKELEARIEEL 770
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    619 MVQKMTLQDELDELKMH--MSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTPEKN--EKAIsEETLQKVIELENRL 694
Cdd:TIGR02169  771 EEDLHKLEEALNDLEARlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEylEKEI-QELQEQRIDLKEQI 849
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    695 KSFEKnsrklKEESKRLKKENdfLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEA 774
Cdd:TIGR02169  850 KSIEK-----EIENLNGKKEE--LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922

                   ....*....
gi 87299624    775 KALRGKDEE 783
Cdd:TIGR02169  923 KAKLEALEE 931
PTZ00121 PTZ00121
MAEBL; Provisional
172-762 2.02e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   172 KIQELEQTESVLK-QELHDLVKLKTLVDEenafLRKELCDLQKK---FKDKSQEVKDAKECVQSKEEQNRLVIKNLEEEN 247
Cdd:PTZ00121 1291 KADEAKKAEEKKKaDEAKKKAEEAKKADE----AKKKAEEAKKKadaAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   248 ERLRTRCTDLLNDLEKLRNQEAHWRKEKhsvdtrvkvleenliEAKKEIESAQTKynvvSQQLNNKQAEllqkdmditli 327
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKAD---------------EAKKKAEEDKKK----ADELKKAAAA----------- 1416
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   328 RKELQELqnvykQNSAHTAQQADLIQQLQALNMDTQKVLRNQEDVHTAESMsyQKLYNELHMCFETTKSNEvmlrqsvvn 407
Cdd:PTZ00121 1417 KKKADEA-----KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA--KKKAEEAKKADEAKKKAE--------- 1480
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   408 lqgqlfqKEQENVKLKEKLEESQGTAPSLSphdsdsshsgkaplstletlmisQKSEIEYLQKKLKVANEKLMANRSCDQ 487
Cdd:PTZ00121 1481 -------EAKKADEAKKKAEEAKKKADEAK-----------------------KAAEAKKKADEAKKAEEAKKADEAKKA 1530
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   488 DFSEKGTEGKHKEpPVKRSRSLSPKSSFMGSEELRKLKKAERKIEnlEKTLQLKSQEndELRDAHEKRKERLQMLHTNYR 567
Cdd:PTZ00121 1531 EEAKKADEAKKAE-EKKKADELKKAEELKKAEEKKKAEEAKKAEE--DKNMALRKAE--EAKKAEEARIEEVMKLYEEEK 1605
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   568 AVK-EQLKQWEEDSGMAEsrQMKRAEPHQLRQEDSDAVWNELayfKRENQELMVQKMTLQDELDELKMHMSIDKTTIQEL 646
Cdd:PTZ00121 1606 KMKaEEAKKAEEAKIKAE--ELKKAEEEKKKVEQLKKKEAEE---KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   647 NRCMAEKR--EEQLFRQHEDA----EVKKSTPEKNEKA--ISEETLQKVIELENRLKSFEKNSRKlKEESKRLKKENDFL 718
Cdd:PTZ00121 1681 KKAEEDEKkaAEALKKEAEEAkkaeELKKKEAEEKKKAeeLKKAEEENKIKAEEAKKEAEEDKKK-AEEAKKDEEEKKKI 1759
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....
gi 87299624   719 KSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALET 762
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
385-805 2.23e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.88  E-value: 2.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    385 NELHmcfettKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSE 464
Cdd:pfam15921   98 NELH------EKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQ 171
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    465 IEYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKEPPVK--RSRSLSPKSSFMGSE---ELRKLKKAERKIENLEKTLQ 539
Cdd:pfam15921  172 IEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMStmHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEALK 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    540 LKSQENDE-LRDAHEKRKERLQMLHTnyravkeqlkqwEEDSGMAESRQMKRAEPHQLRQEdsdavwNELAYFKRENQEL 618
Cdd:pfam15921  252 SESQNKIElLLQQHQDRIEQLISEHE------------VEITGLTEKASSARSQANSIQSQ------LEIIQEQARNQNS 313
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    619 MVQKmtlqdELDELKMHMSIDKTTIQELNRcMAEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFE 698
Cdd:pfam15921  314 MYMR-----QLSDLESTVSQLRSELREAKR-MYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH 387
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    699 KNSRKL---KEESKRL---KKENDFLKSHLKHYQEDSEAREKELEQLLRVSKD-----VEHDKSELQTKITALEtEVTTL 767
Cdd:pfam15921  388 KREKELsleKEQNKRLwdrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSecqgqMERQMAAIQGKNESLE-KVSSL 466
                          410       420       430
                   ....*....|....*....|....*....|....*...
gi 87299624    768 RRQVTEAKALRGKDEEVVCPEERAHRPTDKAKSEMATT 805
Cdd:pfam15921  467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
512-783 3.67e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 3.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    512 KSSFMGSEELRKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRA 591
Cdd:TIGR02169  220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL 299
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    592 EPHQLRQEDSdavwneLAYFKRENQELMVQKMTLQDELDELKmhmsidkTTIQELNRcmaEKREEQLFRQHEDAEVKKST 671
Cdd:TIGR02169  300 EAEIASLERS------IAEKERELEDAEERLAKLEAEIDKLL-------AEIEELER---EIEEERKRRDKLTEEYAELK 363
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    672 PEKNEKaiseetlqkVIELENRLKSFEKNSRKLKEESKR---LKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEH 748
Cdd:TIGR02169  364 EELEDL---------RAELEEVDKEFAETRDELKDYREKlekLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
                          250       260       270
                   ....*....|....*....|....*....|....*
gi 87299624    749 DKSELQTKITALETEVTTLRRQVTEAKALRGKDEE 783
Cdd:TIGR02169  435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
519-780 3.94e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 45.05  E-value: 3.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   519 EELRKLKKAERKIENL----EKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPH 594
Cdd:PRK03918  179 ERLEKFIKRTENIEELikekEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   595 QLRQEDSDAVwNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRcmAEKREEQLFRQHEDAEVKKSTPEK 674
Cdd:PRK03918  259 EKIRELEERI-EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE--IEKRLSRLEEEINGIEERIKELEE 335
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   675 NEKAIsEETLQKVIELENRLKSFEKNSRKLkEESKRLKKENDFLKSHLKHYQedSEAREKELEQLLRVSKDVEHDKSELQ 754
Cdd:PRK03918  336 KEERL-EELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKIT 411
                         250       260
                  ....*....|....*....|....*.
gi 87299624   755 TKITALETEVTTLRRQVTEAKALRGK 780
Cdd:PRK03918  412 ARIGELKKEIKELKKAIEELKKAKGK 437
PRK11281 PRK11281
mechanosensitive channel MscK;
139-361 4.12e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 44.90  E-value: 4.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   139 DLTQTVSLVVEREKQKSEAKDRKvleilqvkdskiQELEQTESVLKQELHDLVKLKTLVDEENA--FLRKELCDLQKKFK 216
Cdd:PRK11281   64 DLEQTLALLDKIDRQKEETEQLK------------QQLAQAPAKLRQAQAELEALKDDNDEETRetLSTLSLRQLESRLA 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   217 DKSQEVKDAKECVQskeEQNRLVIkNLEEENERLRTRCTDLLNDLEKLRNQeahwrkeKHSVDTRVKVL---EENLIEAK 293
Cdd:PRK11281  132 QTLDQLQNAQNDLA---EYNSQLV-SLQTQPERAQAALYANSQRLQQIRNL-------LKGGKVGGKALrpsQRVLLQAE 200
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 87299624   294 KEIESAQTKYNVVSQQLNNKQAELLQKDMD-----ITLIRKELQELQNV----YKQNSAHTAQQADLIQQLQALNMD 361
Cdd:PRK11281  201 QALLNAQNDLQRKSLEGNTQLQDLLQKQRDyltarIQRLEHQLQLLQEAinskRLTLSEKTVQEAQSQDEAARIQAN 277
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
148-775 5.75e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 44.33  E-value: 5.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    148 VEREKQKSEAKDRKVLEILQVKDSKIQELE-QTESVLKQELHDLVKLKTLVDEENAflRKELCDLQKKFKDKSQEVKDAK 226
Cdd:pfam05483   97 IEAELKQKENKLQENRKIIEAQRKAIQELQfENEKVSLKLEEEIQENKDLIKENNA--TRHLCNLLKETCARSAEKTKKY 174
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    227 EcvqSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSvdtRVKVLEEnliEAKKEIESAQTKYNVV 306
Cdd:pfam05483  175 E---YEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHE---KIQHLEE---EYKKEINDKEKQVSLL 245
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    307 SQQLNNKQaellQKDMDITLIRKElqelqnvykqnSAHTAQQADLIQQLQALNMdtqKVLRNQEDVHTAEsmsyqklYNE 386
Cdd:pfam05483  246 LIQITEKE----NKMKDLTFLLEE-----------SRDKANQLEEKTKLQDENL---KELIEKKDHLTKE-------LED 300
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    387 LHMCFETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDsdsshsgKAPLSTLETLMISQKSEIE 466
Cdd:pfam05483  301 IKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEF-------EATTCSLEELLRTEQQRLE 373
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    467 YLQKKLKVANEKLMaNRSCDQDFSEKGTEGKHKEppvkrsrsLSPKSSFMGSEElrKLKKAERKIENLEKTLQLKSQEND 546
Cdd:pfam05483  374 KNEDQLKIITMELQ-KKSSELEEMTKFKNNKEVE--------LEELKKILAEDE--KLLDEKKQFEKIAEELKGKEQELI 442
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    547 ELRDAHEKRKERLQMLHTNYRAVKEQ-LKQWEEDSGMAESRQMKRAEphqlrqedsdavwnelayFKRENQELMVQKMTL 625
Cdd:pfam05483  443 FLLQAREKEIHDLEIQLTAIKTSEEHyLKEVEDLKTELEKEKLKNIE------------------LTAHCDKLLLENKEL 504
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    626 QDELDELKMHMsidKTTIQELNRCmaEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKNSRKLK 705
Cdd:pfam05483  505 TQEASDMTLEL---KKHQEDIINC--KKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIE 579
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    706 EESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAK 775
Cdd:pfam05483  580 YEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
164-310 9.98e-04

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 42.82  E-value: 9.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    164 EILQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCDLQKKFKDKSQEVKDAKECVQSKEEQNRLVIKNL 243
Cdd:pfam09787   51 ELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEEL 130
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    244 EEENERLRTRCTDLLNDLEKLRNQ---EAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQL 310
Cdd:pfam09787  131 RRSKATLQSRIKDREAEIEKLRNQltsKSQSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQL 200
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
259-478 1.07e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 1.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  259 NDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQLNNKQAELLQKDMDITLIRKELQELQNVY 338
Cdd:COG4942   27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  339 kqnsahtaqqADLIQQLQAL-NMDTQKVLRNQEDVHTAE-SMSYQKLYN----ELHMCFETTKSNEVMLRQSVVNLQGQL 412
Cdd:COG4942  107 ----------AELLRALYRLgRQPPLALLLSPEDFLDAVrRLQYLKYLAparrEQAEELRADLAELAALRAELEAERAEL 176
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87299624  413 FQKEQENVKLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLETLMISQKSEIEYLQKKLKVANEK 478
Cdd:COG4942  177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
519-776 1.12e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 1.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    519 EELRKLKKAERKIENLEKTLQLKSQEN-----DELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEP 593
Cdd:pfam17380  306 EEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQM 385
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    594 HqlRQEDSDAVWNEL-AYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEK-------REEQLFRQHEDA 665
Cdd:pfam17380  386 E--RQQKNERVRQELeAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremervRLEEQERQQQVE 463
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    666 EVKKSTPEKNEKAIS---EETLQKVIELENRL---KSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQl 739
Cdd:pfam17380  464 RLRQQEEERKRKKLElekEKRDRKRAEEQRRKileKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER- 542
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 87299624    740 lRVSKDVEHDK---------SELQTKITALETEVTTLRRQVTEAKA 776
Cdd:pfam17380  543 -RKQQEMEERRriqeqmrkaTEERSRLEAMEREREMMRQIVESEKA 587
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
618-767 1.42e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 42.99  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   618 LMVQKM------TLQDELDElkmhmsidktTIQELnrcmaekREEQLFrQHEDAEVKKSTpEKNEKAISEetLQKVIELE 691
Cdd:PRK05771    1 LAPVRMkkvlivTLKSYKDE----------VLEAL-------HELGVV-HIEDLKEELSN-ERLRKLRSL--LTKLSEAL 59
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 87299624   692 NRLKSFEKNSRKLKEESKRLKKENdflkshlkhYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEVTTL 767
Cdd:PRK05771   60 DKLRSYLPKLNPLREEKKKVSVKS---------LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
241-785 2.08e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 2.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    241 KNLEEENERLrTRCTDLLNDLEK-----------------LRNQEAHWrkEKHSVDTRVKVLEENLIEAKKEIESAQTKY 303
Cdd:TIGR02168  179 RKLERTRENL-DRLEDILNELERqlkslerqaekaerykeLKAELREL--ELALLVLRLEELREELEELQEELKEAEEEL 255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    304 NVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYKqnsAHTAQQADLIQQLQALNMDTQKVLRNQEdvhtaesmsyqkl 383
Cdd:TIGR02168  256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELY---ALANEISRLEQQKQILRERLANLERQLE------------- 319
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    384 ynELHMCFETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLsphdsdsshsgKAPLSTLETLMISQKS 463
Cdd:TIGR02168  320 --ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----------ESRLEELEEQLETLRS 386
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    464 EIEYLQKKLKVANEKL--------MANRSCDQDFSEKGTEGKHKEPPVKRSRSLSPKSSFMGSEELRK-LKKAERKIENL 534
Cdd:TIGR02168  387 KVAQLELQIASLNNEIerlearleRLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEeLERLEEALEEL 466
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    535 EKTLQLKSQENDELRDAHEKRKERLQMLHT-------NYRAVKEQLKQWEEDSGMAE--SRQMKRAEPHQLRQE------ 599
Cdd:TIGR02168  467 REELEEAEQALDAAERELAQLQARLDSLERlqenlegFSEGVKALLKNQSGLSGILGvlSELISVDEGYEAAIEaalggr 546
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    600 -------DSDAVWNELAYFKRENQ------------------ELMVQKMTLQDELDELKMHMSIDK-------------- 640
Cdd:TIGR02168  547 lqavvveNLNAAKKAIAFLKQNELgrvtflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPklrkalsyllggvl 626
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    641 --TTIQELNRCMAEKREEQLF---------------RQHEDAEV----KKSTPEKNEKAIsEETLQKVIELENRLKSFEK 699
Cdd:TIGR02168  627 vvDDLDNALELAKKLRPGYRIvtldgdlvrpggvitGGSAKTNSsileRRREIEELEEKI-EELEEKIAELEKALAELRK 705
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    700 NSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAKALRG 779
Cdd:TIGR02168  706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

                   ....*.
gi 87299624    780 KDEEVV 785
Cdd:TIGR02168  786 ELEAQI 791
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
154-734 2.26e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.36  E-value: 2.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   154 KSEAKDRKVLEILQVKDSKIQELE---QTESVLKQELHDLVKLKTLVDEENAFLRKELCDLQKKFKDKSQEVKD---AKE 227
Cdd:PRK03918  159 DYENAYKNLGEVIKEIKRRIERLEkfiKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleeLKE 238
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   228 CVQSKEEQNRLVIKNLEEENERLR---TRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLE--ENLIEAKKEIESAQTK 302
Cdd:PRK03918  239 EIEELEKELESLEGSKRKLEEKIReleERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyEEYLDELREIEKRLSR 318
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   303 YNVVSQQLNNKQAELLQKDMDITLIRKELQELQNVYkqnsahtaqqADLIQQLQALNMDTQKVLRNQEDVHTAESMSYQK 382
Cdd:PRK03918  319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRL----------EELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   383 LYNELHMcFETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLETLMIS-Q 461
Cdd:PRK03918  389 LEKELEE-LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEkE 467
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   462 KSEIEYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKEPPVKRSRSLSPKSSFMGSEELRKLKKAERKIENLEKTLQLK 541
Cdd:PRK03918  468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE 547
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   542 SQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPHQLRqedsdavWNELAYFKRENQELMVQ 621
Cdd:PRK03918  548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNE-------YLELKDAEKELEREEKE 620
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   622 KMTLQDELDELKMHMSIDKTTIQELnrcmaEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIE-LENRLKSFEKN 700
Cdd:PRK03918  621 LKKLEEELDKAFEELAETEKRLEEL-----RKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEeLEKRREEIKKT 695
                         570       580       590
                  ....*....|....*....|....*....|....
gi 87299624   701 SRKLKEESKRLKKENDFLKSHLKHYQEDSEAREK 734
Cdd:PRK03918  696 LEKLKEELEEREKAKKELEKLEKALERVEELREK 729
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
528-1303 2.40e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 42.65  E-value: 2.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    528 ERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTN---YRAVKEQLKQWEEDSGMAESRQMKRAEphQLRQEDSDAV 604
Cdd:pfam02463  169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAkkaLEYYQLKEKLELEEEYLLYLDYLKLNE--ERIDLLQELL 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    605 WNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKstpEKNEKAISEETL 684
Cdd:pfam02463  247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLKESEKEK 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    685 QKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEV 764
Cdd:pfam02463  324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    765 TTLRRQVTEAKALRGKDEEVVCPEERAHRPTDKAKSEMATTDVRARRCDCKTATTKVKFKAAKRKCSVGRHHTVLNHSIK 844
Cdd:pfam02463  404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    845 VMSHVENLSKDGWEDVSEGSDSETQTFQNLGTIIVETSQNISPIEDGRNQKEIDQTEGSCAQQRAMQTYSCEDIKAPQSI 924
Cdd:pfam02463  484 EQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEER 563
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    925 SHNKNTKKMTFQKKSGSLQKSLHSALPARVNREKCKNLPAQKSSSSTISLRERiVSLQQQNSLLQNARRAAEASAKEYKE 1004
Cdd:pfam02463  564 QKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD-EDDKRAKVVEGILKDTELTKLKESAK 642
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1005 ANEKLLhQQQVSDHRFQTSRQTIKKLTLDLAELRKEKEDLLKKVESSSDIMSLAEEVSRIMAPQIKVTTlgpsrsmdlEM 1084
Cdd:pfam02463  643 AKESGL-RKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE---------EL 712
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1085 KQLQCKLKNATNELTKQSSNVKSLRMELLAKDDHIKEMHERTSRMERDITMKRHLIEDLKFRQKVNSESNESFNEMLETL 1164
Cdd:pfam02463  713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1165 EKKVKSLTEECSNKKVSVDSLKQRLNVAVKEKSQYEQMYQKTKEELEkKDLKMSVLISKLNDTETAMAQIETAASEQLQG 1244
Cdd:pfam02463  793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA-LELKEEQKLEKLAEEELERLEEEITKEELLQE 871
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 87299624   1245 LALQSEQVLEGAQKKLLSanEKIEEFTVFVKALVNELQSDVHGTRHQIRELKKMQKSRH 1303
Cdd:pfam02463  872 LLLKEEELEEQKLKDELE--SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAE 928
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
285-795 2.80e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.26  E-value: 2.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    285 LEENLIEAKKEIESAQTKYnvvsQQLNNKQAELLQKDMDITLIRKELQELQNvykQNSAHTAQQADLIQQLQALnmdtqK 364
Cdd:TIGR00618  227 ELKHLREALQQTQQSHAYL----TQKREAQEEQLKKQQLLKQLRARIEELRA---QEAVLEETQERINRARKAA-----P 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    365 VLRNQEDVHTAEsMSYQKLYNELhmcfettksnevmlrQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDSDSS 444
Cdd:TIGR00618  295 LAAHIKAVTQIE-QQAQRIHTEL---------------QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    445 HSGKAPLSTLETLMiSQKSEIEYLQKKLKVANEKLMANRSCDQDFSEKGTEGKHKEPPVKRSRSLSPKSSFMGSEELRKL 524
Cdd:TIGR00618  359 DAHEVATSIREISC-QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQ 437
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    525 KKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTnyravKEQLKQWEEDSGMAESrqmKRAEPHQLRQEDSDAV 604
Cdd:TIGR00618  438 RYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT-----KEQIHLQETRKKAVVL---ARLLELQEEPCPLCGS 509
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    605 WNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELnrcmaekreeqlfrqheDAEVKKSTPEKNEKAISEETL 684
Cdd:TIGR00618  510 CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQL-----------------TSERKQRASLKEQMQEIQQSF 572
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    685 QKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETEV 764
Cdd:TIGR00618  573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQ 652
                          490       500       510
                   ....*....|....*....|....*....|.
gi 87299624    765 TTLRRQVTEAKALRGKDEEVVCPEERAHRPT 795
Cdd:TIGR00618  653 LTLTQERVREHALSIRVLPKELLASRQLALQ 683
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
157-335 2.95e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.06  E-value: 2.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  157 AKDRKVLEILQVKDSKIQELEQTESVLKQELHDLvklktlvdeenaflRKELCDLQKKFKDKSQEVKDAKECVQSKEEQn 236
Cdd:COG1579    3 PEDLRALLDLQELDSELDRLEHRLKELPAELAEL--------------EDELAALEARLEAAKTELEDLEKEIKRLELE- 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  237 rlvIKNLEEENERLRTRctdlLNDLEKLRNQEAHwRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQQLNNKQAE 316
Cdd:COG1579   68 ---IEEVEARIKKYEEQ----LGNVRNNKEYEAL-QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE 139
                        170       180
                 ....*....|....*....|...
gi 87299624  317 LLQK----DMDITLIRKELQELQ 335
Cdd:COG1579  140 LEEKkaelDEELAELEAELEELE 162
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1036-1387 2.96e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.97  E-value: 2.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1036 ELRKEKEDLLKKVESSSDIMSLAEEVSRIMAPQIKVTTLGPSRSMDLEMKqlQCKLKNATNELTKQSSNVKSLRMELLAK 1115
Cdd:PRK03918  173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREE--LEKLEKEVKELEELKEEIEELEKELESL 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1116 DDHIKEMHERTSRMERDITMKRHLIEDLKFRQKvNSESNESFNEMLETLEKKVKSLTEECSNKKVSVDSLKQRLNV---A 1192
Cdd:PRK03918  251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVK-ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGieeR 329
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1193 VKEKSQYEQMYQKTKEELEKKDLKMSVLISKLNDTETAMaQIETAASEQLQGLALQSEQVLEGAQKKLLSANEKIEEFTV 1272
Cdd:PRK03918  330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK-AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  1273 FVKALVNELQSDVHGTRHQIRELKKMQKSRHACK---TSTHKAQTLAASILNISR--SDLEEILDTEDELEIEKTKIDIE 1347
Cdd:PRK03918  409 KITARIGELKKEIKELKKAIEELKKAKGKCPVCGrelTEEHRKELLEEYTAELKRieKELKEIEEKERKLRKELRELEKV 488
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 87299624  1348 NDKEWMLYIQKLLEGQLPFASYLLEAV-LEKIKENKKLTEG 1387
Cdd:PRK03918  489 LKKESELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEK 529
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
519-784 3.07e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 3.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  519 EELR-KLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEdsgmaesrqmkraephqlr 597
Cdd:COG1196  270 EELRlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE------------------- 330
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  598 qedsdavwnELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMAEKREEQLFRQHEDAEVKKSTpeknek 677
Cdd:COG1196  331 ---------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA------ 395
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  678 aisEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKI 757
Cdd:COG1196  396 ---AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
                        250       260
                 ....*....|....*....|....*..
gi 87299624  758 TALETEVTTLRRQVTEAKALRGKDEEV 784
Cdd:COG1196  473 ALLEAALAELLEELAEAAARLLLLLEA 499
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
149-1065 3.72e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 3.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    149 EREKQKSEAKDRKVLEIL----QVKDSKIQELEQTESVLKQELHDLVKLKTLVDEENAFLRKELCDLQKKFKDKSQEVKD 224
Cdd:TIGR02168  213 ERYKELKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    225 AKECVQSKEEQNRLV---IKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQT 301
Cdd:TIGR02168  293 LANEISRLEQQKQILrerLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    302 KYNVVSQQLNNKQAELLQKDMDITLIRKELQELQNvYKQNSAHTAQQADLIQQLQALNMDTQKVLRNQEDVhtaesmsyq 381
Cdd:TIGR02168  373 RLEELEEQLETLRSKVAQLELQIASLNNEIERLEA-RLERLEDRRERLQQEIEELLKKLEEAELKELQAEL--------- 442
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    382 klyNELHMCFETTKSNEVMLRQSVVNLQGQLFQKEQENVKLKEKLEESQGTAPSLSPHDSDSSHSGKAPLSTLE-----T 456
Cdd:TIGR02168  443 ---EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglS 519
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    457 LMISQKSEIEYLQKKLKVANEKLMANRSCD------------QDFSEKGTEGK----------HKEPPVKRSRSLSPKSS 514
Cdd:TIGR02168  520 GILGVLSELISVDEGYEAAIEAALGGRLQAvvvenlnaakkaIAFLKQNELGRvtflpldsikGTEIQGNDREILKNIEG 599
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    515 FMGSeeLRKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKErlqmLHTNYRAVKEQLKQWEEDSGMAESRQMKRAEPH 594
Cdd:TIGR02168  600 FLGV--AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKK----LRPGYRIVTLDGDLVRPGGVITGGSAKTNSSIL 673
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    595 QLRQEdSDAVWNELAYFKRENQELMVQKMTLQDELDELkmhmsidkttiqelnrcmaEKREEQLFRQHEDAEvkkstpek 674
Cdd:TIGR02168  674 ERRRE-IEELEEKIEELEEKIAELEKALAELRKELEEL-------------------EEELEQLRKELEELS-------- 725
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    675 nekaiseetlQKVIELENRLKSFEKNSRKLKEESKRLKKEndflkshLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQ 754
Cdd:TIGR02168  726 ----------RQISALRKDLARLEAEVEQLEERIAQLSKE-------LTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    755 TKITALETEVTTLRRQVTEAKAlrgkdeEVVCPEERAHRPTDKAKSEmattdvrarrcdcktattkvkfkaAKRKCSVGR 834
Cdd:TIGR02168  789 AQIEQLKEELKALREALDELRA------ELTLLNEEAANLRERLESL------------------------ERRIAATER 838
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    835 HHTVLNHSIKVMSHVENLSKDGWEDVSEGSDSETQTFQNLGTIIVETSQNISPIEDGRNQKEIDQTEGSCAQQRAMQtys 914
Cdd:TIGR02168  839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR--- 915
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    915 ceDIKAPQSISHNKNTKKMTFQKKSGSLQKSLHSAlpARVNREKCKNLPAQKSSSSTiSLRERIVSLQQQNSLLQNARRA 994
Cdd:TIGR02168  916 --ELEELREKLAQLELRLEGLEVRIDNLQERLSEE--YSLTLEEAEALENKIEDDEE-EARRRLKRLENKIKELGPVNLA 990
                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 87299624    995 AEAsakEYKEANEkllhqqqvsdhRFQtsrqtikkltldlaELRKEKEDLLKKVEsssDIMSLAEEVSRIM 1065
Cdd:TIGR02168  991 AIE---EYEELKE-----------RYD--------------FLTAQKEDLTEAKE---TLEEAIEEIDREA 1030
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
149-320 3.92e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 3.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  149 EREKQKSEAKDRKVLEILQVKDSKIQELEQTESVLKQELHDLVKLKTLVDEEnaflRKELCDLQKKFKDKSQEVKDAKEC 228
Cdd:COG1196  322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LAEAEEELEELAEELLEALRAAAE 397
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  229 VQSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQ 308
Cdd:COG1196  398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
                        170
                 ....*....|..
gi 87299624  309 QLNNKQAELLQK 320
Cdd:COG1196  478 ALAELLEELAEA 489
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
150-322 4.29e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.68  E-value: 4.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  150 REKQKSEAKDRKVLEILQVKDSKIQELEQTESVLKQELHDLVKLKTLVDeenafLRKELCDLQKKFKDKSQEVKDAkecv 229
Cdd:COG4717   81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERLEEL---- 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  230 qskeEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQ-EAHWRKEKHSVDTRVKVLEENLIEAKKEIESAQTKYNVVSQ 308
Cdd:COG4717  152 ----EERLEELRELEEELEELEAELAELQEELEELLEQlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
                        170
                 ....*....|....
gi 87299624  309 QLNNKQAELLQKDM 322
Cdd:COG4717  228 ELEQLENELEAAAL 241
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
522-761 4.46e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 41.35  E-value: 4.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    522 RKLKKAERKIENLEKTLQLKSQENDELrdahekrKERLQMLHTNYRAVKEQLKQWEEdsGMAESRQMKRAEPHQLRQEDS 601
Cdd:pfam10174  394 RKINVLQKKIENLQEQLRDKDKQLAGL-------KERVKSLQTDSSNTDTALTTLEE--ALSEKERIIERLKEQREREDR 464
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    602 DAVwNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNRCMaekreeqlfrqhedaeVKKSTPEKNEKAISE 681
Cdd:pfam10174  465 ERL-EELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSG----------------LKKDSKLKSLEIAVE 527
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    682 ETLQKVIELENRLK---SFEKNSRKLKEESKRLKKendfLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKIT 758
Cdd:pfam10174  528 QKKEECSKLENQLKkahNAEEAVRTNPEINDRIRL----LEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIA 603

                   ...
gi 87299624    759 ALE 761
Cdd:pfam10174  604 ELE 606
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
558-1270 5.11e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 41.36  E-value: 5.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    558 RLQMLHTNYRA--VKEQLKQWEEDSGMAESRQ---MKRAEPHQLRQE---DSDAVWNELAYFKRENQELMVQKMTLQDE- 628
Cdd:pfam12128  259 RLSHLHFGYKSdeTLIASRQEERQETSAELNQllrTLDDQWKEKRDElngELSAADAAVAKDRSELEALEDQHGAFLDAd 338
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    629 LDELKMHMSIDKTTIQELNrcMAEKREEQLFRQHEDAEVKKstpEKNEKAISEETLQKVIELENRL-KSFEKNSRKLKEE 707
Cdd:pfam12128  339 IETAAADQEQLPSWQSELE--NLEERLKALTGKHQDVTAKY---NRRRSKIKEQNNRDIAGIKDKLaKIREARDRQLAVA 413
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    708 SKRLKKENDFLKShlKHYQEDSEAREKELEQLLRVSkdvehDKSELQTKITALETEVTTLRRQVTEAKALRGKDEEVVCP 787
Cdd:pfam12128  414 EDDLQALESELRE--QLEAGKLEFNEEEYRLKSRLG-----ELKLRLNQATATPELLLQLENFDERIERAREEQEAANAE 486
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    788 EERAHRPTDKAKSEMATTDVRARRCDcktattkvkFKAAKRKCSVGRHHTVLNHSIKVMSHVENLSKDGWEdvsegsdse 867
Cdd:pfam12128  487 VERLQSELRQARKRRDQASEALRQAS---------RRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWE--------- 548
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    868 tqtfQNLGTIIvetsqniSPIEDGRNQKEIDQTEGSCAQQRAMQ--TYSCEDIKAPQSISHNKNTKKMTFQKKSG----- 940
Cdd:pfam12128  549 ----QSIGKVI-------SPELLHRTDLDPEVWDGSVGGELNLYgvKLDLKRIDVPEWAASEEELRERLDKAEEAlqsar 617
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    941 SLQKSLHSAL-PARVNREKCK---NLPAQKSSSSTISLRERIVSLQQQNSLLQNARRAAEASAKEYKEaneKLLHQQQVS 1016
Cdd:pfam12128  618 EKQAAAEEQLvQANGELEKASreeTFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLN---SLEAQLKQL 694
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1017 DHRFQTSRQTIKKltlDLAELRKEKEDLLKKVESSSDImSLAEEVSRIMAPQIkvttlgpsrSMDLEMKQLQCKLKNATN 1096
Cdd:pfam12128  695 DKKHQAWLEEQKE---QKREARTEKQAYWQVVEGALDA-QLALLKAAIAARRS---------GAKAELKALETWYKRDLA 761
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1097 ELTKQSSNVKSLRMEllakddhIKEMHERTSRMERditmkrhliedlkFRQKVNsesnESFNEMLETLEKKVKSLTEECS 1176
Cdd:pfam12128  762 SLGVDPDVIAKLKRE-------IRTLERKIERIAV-------------RRQEVL----RYFDWYQETWLQRRPRLATQLS 817
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624   1177 NKKVSVDSLKQRLNVAVKEKSQYEQMYQKTKEELEKKDLKMSVLISKLNDTETAMAQI-ETAASEQLQGLALQSEQVLEG 1255
Cdd:pfam12128  818 NIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLkEDANSEQAQGSIGERLAQLED 897
                          730
                   ....*....|....*
gi 87299624   1256 AQKKLLSANEKIEEF 1270
Cdd:pfam12128  898 LKLKRDYLSESVKKY 912
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
150-389 5.78e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 41.26  E-value: 5.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    150 REKQKSEAKDRKVLEILQVKDSKIQELE-------QTESVLKQELHDLVKLKTLVDEEnaflrkelcdlQKKFKDKSQEV 222
Cdd:pfam17380  354 RQEERKRELERIRQEEIAMEISRMRELErlqmerqQKNERVRQELEAARKVKILEEER-----------QRKIQQQKVEM 422
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    223 KDA-KECVQSKEEQNRLVIKNLEEENERLRTRCTDLLNDLEKLRNQEAHWRKEKHSVDTrvkvleenliEAKKEIESAQT 301
Cdd:pfam17380  423 EQIrAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEK----------EKRDRKRAEEQ 492
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    302 KYNVVSQQLNNKQAELLQKDMDITLIRKELQELQN-VYKQNSAHTAQQADLIQQlqalNMDTQKVLRNQEDVHTAESMSY 380
Cdd:pfam17380  493 RRKILEKELEERKQAMIEEERKRKLLEKEMEERQKaIYEEERRREAEEERRKQQ----EMEERRRIQEQMRKATEERSRL 568

                   ....*....
gi 87299624    381 QKLYNELHM 389
Cdd:pfam17380  569 EAMEREREM 577
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
510-742 6.03e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.91  E-value: 6.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  510 SPKSSFMGSEELRKLKKAERKIENLEKTLQLKSQENDELRDAHEKRKERLQMLHTNYRAVKEQLKQWEEDSGMAESRQmK 589
Cdd:COG4717   34 AGKSTLLAFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-E 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  590 RAEPHQLRQEDSDAVWNELAYFKRENQELMvqkmTLQDELDELKMHMsidkTTIQELNRCMAEKREEQLFRQHEDAEVKK 669
Cdd:COG4717  113 ELREELEKLEKLLQLLPLYQELEALEAELA----ELPERLEELEERL----EELRELEEELEELEAELAELQEELEELLE 184
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 87299624  670 STPEKNEKAIsEETLQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEdsEAREKELEQLLRV 742
Cdd:COG4717  185 QLSLATEEEL-QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLLLI 254
COG4026 COG4026
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ...
684-763 6.49e-03

Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];


Pssm-ID: 443204 [Multi-domain]  Cd Length: 287  Bit Score: 40.10  E-value: 6.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  684 LQKVIELENRLKSFEKNSRKLKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQLLRVSKDVEHDKSELQTKITALETE 763
Cdd:COG4026  127 IPEYNELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
584-778 6.60e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 40.65  E-value: 6.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    584 ESRQMKRAEPHQLRQEDSDAVWNELAYFKRENQELMVQKMTLQDELDELKMHMSIDKTTIQELNR----------CMAEK 653
Cdd:pfam07888   37 EECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEkykelsasseELSEE 116
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624    654 ReEQLFRQHEDAEVKKSTPEKNEKAISEETLQKVIELENRLKSFEKNSRKLKEEskrlKKENDFLKSHLKHYQEDSEARE 733
Cdd:pfam07888  117 K-DALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEE----EAERKQLQAKLQQTEEELRSLS 191
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 87299624    734 KELEQLLRVSKDVEHDKSELQTKITALETEVTTLRRQVTEAKALR 778
Cdd:pfam07888  192 KEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALL 236
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
546-794 9.28e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 9.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  546 DELRDAHEKRK--ERLQMLHTNYRAVKEQLkqweedsgmAESRQMKRAEPHQLRQEDSDAVWNELAYFKRENQELMVQKM 623
Cdd:COG4913  242 EALEDAREQIEllEPIRELAERYAAARERL---------AELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELE 312
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  624 TLQDELDElkmhmsidkttiqelnrcmAEKREEQLFRQHEDAEVKKSTPEKNEKAISEETLQkviELENRLKSFEKNSRK 703
Cdd:COG4913  313 RLEARLDA-------------------LREELDELEAQIRGNGGDRLEQLEREIERLERELE---ERERRRARLEALLAA 370
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 87299624  704 LKEESKRLKKENDFLKSHLKHYQEDSEAREKELEQ----LLRVSKDVEHDKSELQTKITALET-------EVTTLRRQVt 772
Cdd:COG4913  371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEalaeAEAALRDLRRELRELEAEIASLERrksnipaRLLALRDAL- 449
                        250       260       270
                 ....*....|....*....|....*....|
gi 87299624  773 eAKALRGKDEEV--------VCPEERAHRP 794
Cdd:COG4913  450 -AEALGLDEAELpfvgelieVRPEEERWRG 478
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH