|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
60-783 |
7.11e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 112.10 E-value: 7.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 60 VTLLEESRSDDATKeyrDSDKDLMRALDMLAAHYVQE--AYREKSKDKKRELFMKATNLYTSadkiiMYDQSHLLGRAYF 137
Cdd:TIGR02917 235 TILIEAGEFEEAEK---HADALLKKAPNSPLAHYLKAlvDFQKKNYEDARETLQDALKSAPE-----YLPALLLAGASEY 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 138 CLlegDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPANVRI-GMAHcfLKMGNPEK 216
Cdd:TIGR02917 307 QL---GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLlGEAY--LALGDFEK 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 217 AKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANP-----MVLNHLANHFFFKkdyqkvhhl 291
Cdd:TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSE---AIADLETAAQLDPELGradllLILSYLRSGQFDK--------- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 292 ALHAFHNTENEAMRAESCYQLARSFH-AQSDYDQAFQYYYQSTQIAPANFVLPHYgLGQMYIYRGDTENAAQCFEKVLKI 370
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYlGKGDLAKAREAFEKALSIEPDFFPAAAN-LARIDIQEGNPDDAIQRFEKVLTI 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 371 QPGNYETMKILGSLYAHSNSQtkrDMAKTHLKKVTEQFPEDIEAWIELAQ-ILEQNDLQASLSAYGTASSILRDkakyei 449
Cdd:TIGR02917 529 DPKNLRAILALAGLYLRTGNE---EEAVAWLEKAAELNPQEIEPALALAQyYLGKGQLKKALAILNEAADAAPD------ 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 450 PAEIQNNVASLHYRLGNLKMAKLTLESALKHATsemDKDVKYYEsiqvtmkynLARLNEAMSSYDVADKLYKEILKEHPN 529
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---DSALALLL---------LADAYAVMKNYAKAITSLKRALELKPD 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 530 YIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTdaySLIALGN 609
Cdd:TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ---NAIKLHR 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 610 FSLQTlhqpsrdkekerKHQEKALAIFKQVLRNDPrniwatngigavlahkgcvieaRDIFAQvreatadfcdvwLNIAH 689
Cdd:TIGR02917 745 ALLAS------------GNTAEAVKTLEAWLKTHP----------------------NDAVLR------------TALAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 690 VYVEQKQYISAIQMYENCMKKfyKHNNVEVMQYLARAYLranKLVDAKAVLL--KARRVAPqdtvllfNIAVVLSRLAMA 767
Cdd:TIGR02917 779 LYLAQKDYDKAIKHYQTVVKK--APDNAVVLNNLAWLYL---ELKDPRALEYaeRALKLAP-------NIPAILDTLGWL 846
|
730
....*....|....*...
gi 28574254 768 IL--KDEKSTLEIVLQAV 783
Cdd:TIGR02917 847 LVekGEADRALPLLRKAV 864
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
513-754 |
4.35e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.49 E-value: 4.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 513 YDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETIL 592
Cdd:COG2956 24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 593 KNPSTSTDAYSLIAlgnfslqTLHQpsrdkekERKHQEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQ 672
Cdd:COG2956 104 ELDPDDAEALRLLA-------EIYE-------QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 673 VREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKKfyKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTV 752
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ--DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
..
gi 28574254 753 LL 754
Cdd:COG2956 248 LL 249
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
151-812 |
6.87e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 99.39 E-value: 6.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 151 QFNFVLNQSPSNIPS--LLGKACIAfnRKDYRGAMAFYKKALRTNPNcPANVRIGMAHCFLKM----------------- 211
Cdd:TIGR02917 44 QLKNALQKDPNDAEArfLLGKIYLA--LGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQgkfqqvldelpgktlld 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 212 ------------------GNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANPMVLN 273
Cdd:TIGR02917 121 degaaellalrglaylglGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDE---ARALIDEVLTADPGNVDALL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 274 HLANHFFFKKDYQkvhhLALHAFhnteNEAMRAE-----SCYQLARSFHAQSDYDQAFQYYYQSTQIAPaNFVLPHYGLG 348
Cdd:TIGR02917 198 LKGDLLLSLGNIE----LALAAY----RKAIALRpnniaVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKA 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 349 QMYIYRGDTENAAQCFEKVLKIQPGNYETMKILG-SLYAHSNSQTkrdmAKTHLKKVTEQFPEDIEAWIELAQIL----E 423
Cdd:TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGaSEYQLGNLEQ----AYQYLNQILKYAPNSHQARRLLASIQlrlgR 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 424 QNDLQASLS-----------AYGTASSILRDKAKYEIPA-------EIQNNVASLHYRLGNLKMAKLTLESALKH--ATS 483
Cdd:TIGR02917 345 VDEAIATLSpalgldpddpaALSLLGEAYLALGDFEKAAeylakatELDPENAAARTQLGISKLSQGDPSEAIADleTAA 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 484 EMDKDVKYYESIQVTMKYNLARLNEAMSSydvadklYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINND 563
Cdd:TIGR02917 425 QLDPELGRADLLLILSYLRSGQFDKALAA-------AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 564 NPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAysLIALGNFSLQT---------LHQPSRDKEKE--------- 625
Cdd:TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLRTgneeeavawLEKAAELNPQEiepalalaq 575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 626 ----RKHQEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAI 701
Cdd:TIGR02917 576 yylgKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 702 QMYENCMKkfYKHNNVEVMQYLARAYLRANKLVDAK---AVLLKARRVAPQDTVLLFNIAVVLSRLAMAI------LKDE 772
Cdd:TIGR02917 656 TSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKkiaKSLQKQHPKAALGFELEGDLYLRQKDYPAAIqayrkaLKRA 733
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 28574254 773 KSTLEIV------LQAVHELELAQKYFQYLSVHGDKNRFNIEVAGI 812
Cdd:TIGR02917 734 PSSQNAIklhralLASGNTAEAVKTLEAWLKTHPNDAVLRTALAEL 779
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
164-771 |
6.90e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 95.92 E-value: 6.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 164 PSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPAnVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKL 243
Cdd:TIGR02917 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAE-ARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 244 NQLEPESnklGVQMLSKAYTIDNANPMVLNHLANHFFF----KKDYQKVHHLALHAfhntenEAMRAESCYQLARSFHAQ 319
Cdd:TIGR02917 102 LQGKFQQ---VLDELPGKTLLDDEGAAELLALRGLAYLglgqLELAQKSYEQALAI------DPRSLYAKLGLAQLALAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 320 SDYDQAFQYYYQSTQIAPANfVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNyetmkiLGSLYAHSN---SQTKRDM 396
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGN-VDALLLKGDLLLSLGNIELALAAYRKAIALRPNN------IAVLLALATiliEAGEFEE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 397 AKTHLKKVTEQFPEDIEAWIELAQI-LEQNDLQASLSaygTASSILRDKAKYeIPAEIqnnVASL-HYRLGNLKMAKLTL 474
Cdd:TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARE---TLQDALKSAPEY-LPALL---LAGAsEYQLGNLEQAYQYL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 475 ESALKHATSEmDKDVKYYESIQVTMKY---NLARLNEAMSSYDVaDKLYKEILKEhpnyidCYLRLGCMARdkglifvAS 551
Cdd:TIGR02917 319 NQILKYAPNS-HQARRLLASIQLRLGRvdeAIATLSPALGLDPD-DPAALSLLGE------AYLALGDFEK-------AA 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 552 DFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAYSLIALGNFslqtlhqpsrdkekeRKHQE- 630
Cdd:TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL---------------RSGQFd 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 631 KALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKk 710
Cdd:TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT- 527
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574254 711 fYKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIAVVLSR-----LAMAILKD 771
Cdd:TIGR02917 528 -IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGkgqlkKALAILNE 592
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
167-426 |
1.55e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.17 E-value: 1.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 167 LGKACIAFNRKDYRGAMAFYKKALRTNPNcPANVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQL 246
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 247 EPESnklGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKVHHLALHAFHNTENEAmraESCYQLARSFHAQSDYDQAF 326
Cdd:COG2956 91 LLDR---AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA---HAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 327 QYYYQSTQIAPaNFVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNsqtKRDMAKTHLKKVTE 406
Cdd:COG2956 165 EALEKALKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG---DPEEALELLRKALE 240
|
250 260
....*....|....*....|
gi 28574254 407 QFPEDiEAWIELAQILEQND 426
Cdd:COG2956 241 LDPSD-DLLLALADLLERKE 259
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
112-761 |
2.76e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 90.91 E-value: 2.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 112 KATNLYTSADKIIMYDQSHLLGRAYFcLLEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALR 191
Cdd:TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGLAQL-ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 192 TNPNCPaNVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESNKLGVQMLSKAytidNANPMV 271
Cdd:TIGR02917 222 LRPNNI-AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS----APEYLP 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 272 LNHLANHFFFkkdYQKVHHLALHAFHNTENeamRAESCYQ----LARSFHAQSDYDQAfqyyyqSTQIAPANFVLPHYG- 346
Cdd:TIGR02917 297 ALLLAGASEY---QLGNLEQAYQYLNQILK---YAPNSHQarrlLASIQLRLGRVDEA------IATLSPALGLDPDDPa 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 347 ----LGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNSQTKrdmAKTHLKKVTEQFPEDIEAWIELA-QI 421
Cdd:TIGR02917 365 alslLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE---AIADLETAAQLDPELGRADLLLIlSY 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 422 LEQNDLQASLSAygtassILRDKAKYEIPAEIQNNVASLHYRLGNLKMAKLTLESALK----------------HATSEM 485
Cdd:TIGR02917 442 LRSGQFDKALAA------AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSiepdffpaaanlaridIQEGNP 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 486 DKDVKYYESIQVTMKYN------LARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALN 559
Cdd:TIGR02917 516 DDAIQRFEKVLTIDPKNlrailaLAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 560 INNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAYSLIAlgnfslqTLHQPSRDKEKERKHQEKALAIfkqv 639
Cdd:TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA-------DAYAVMKNYAKAITSLKRALEL---- 664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 640 lrnDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKKfyKHNNVEV 719
Cdd:TIGR02917 665 ---KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNA 739
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 28574254 720 MqYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIAVVL 761
Cdd:TIGR02917 740 I-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
232-527 |
3.00e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.32 E-value: 3.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 232 VGALIGLAVLKLNQLEPESNKLGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKvhhlALHAFHNT-ENEAMRAESCY 310
Cdd:COG2956 5 VAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDR----AIRIHQKLlERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 311 QLARSFHAQSDYDQAFQYYYQSTQIAPANfVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNs 390
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDD-AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 391 qtKRDMAKTHLKKVTEQFPEDIEAWIELAQI-LEQNDLQASLSAYgtaSSILRDKAKYeipAEIQNNVASLHYRLGNLKM 469
Cdd:COG2956 159 --DYDEAIEALEKALKLDPDCARALLLLAELyLEQGDYEEAIAAL---ERALEQDPDY---LPALPRLAELYEKLGDPEE 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 28574254 470 AKLTLESALKHATSemdkdvkyyesiqVTMKYNLARLNEAMSSYDVADKLYKEILKEH 527
Cdd:COG2956 231 ALELLRKALELDPS-------------DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
335-607 |
1.04e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.70 E-value: 1.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 335 IAPANFVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNsqtKRDMAKTHLKKVTEQFPEDIEA 414
Cdd:COG2956 2 LLPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRG---EYDRAIRIHQKLLERDPDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 415 WIELAQI-LEQNDLQASLSAYGTASSILRDKakyeipAEIQNNVASLHYRLGNLKMAKLTLESALKhatsEMDKDVKYYe 493
Cdd:COG2956 79 LLELAQDyLKAGLLDRAEELLEKLLELDPDD------AEALRLLAEIYEQEGDWEKAIEVLERLLK----LGPENAHAY- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 494 siqvtmkYNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGN 573
Cdd:COG2956 148 -------CELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220
|
250 260 270
....*....|....*....|....*....|....
gi 28574254 574 LHLAKMQFALGQKNFETILKNPSTSTDAYSLIAL 607
Cdd:COG2956 221 LYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
284-447 |
9.43e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 82.35 E-value: 9.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 284 DYQKVHHLALHAFHNTENEAMRAESC---YQLARSFHAQSDYDQAFQYYYQSTQIAPaNFVLPHYGLGQMYIYRGDTENA 360
Cdd:COG3914 53 EAAAAALLALAAGEAAAAAAALLLLAallELAALLLQALGRYEEALALYRRALALNP-DNAEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 361 AQCFEKVLKIQPGNYETMKILGSLYAHSNsqtKRDMAKTHLKKVTEQFPEDIEAWIELAQILE-QNDLQASLSAYGTASS 439
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLG---RLEEAIAALRRALELDPDNAEALNNLGNALQdLGRLEEAIAAYRRALE 208
|
....*...
gi 28574254 440 ILRDKAKY 447
Cdd:COG3914 209 LDPDNADA 216
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
132-331 |
2.10e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 132 LGRAYfclLEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCpANVRIGMAHCFLKM 211
Cdd:COG2956 82 LAQDY---LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-AHAYCELAELYLEQ 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 212 GNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKvhhl 291
Cdd:COG2956 158 GDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE---AIAALERALEQDPDYLPALPRLAELYEKLGDPEE---- 230
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 28574254 292 ALHAFHNTENEAMRAESCYQLARSFHAQSDYDQAFQYYYQ 331
Cdd:COG2956 231 ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
557-836 |
2.64e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.26 E-value: 2.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 557 ALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAYSLIALGNFSLQTLHQpsrdkEKERKHQEKALAIF 636
Cdd:COG3914 27 ALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL-----LQALGRYEEALALY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 637 KQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKkfYKHNN 716
Cdd:COG3914 102 RRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE--LDPDN 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 717 VEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIavvLSRLAMAILKDEKSTLEIVLQAVHELELAQKYFQYL 796
Cdd:COG3914 180 AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL---LFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 28574254 797 SVHGDKNRFNIEVAGIEASTCQDLLSQAQYHVGRARRIDE 836
Cdd:COG3914 257 YLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDPDR 296
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
160-331 |
3.32e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.81 E-value: 3.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 160 PSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNcPANVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLA 239
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 240 VLKLNQLEPESnklGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKvhhlALHAFHNT-ENEAMRAESCYQLARSFHA 318
Cdd:COG0457 84 LALQALGRYEE---ALEDYDKALELDPDDAEALYNLGLALLELGRYDE----AIEAYERAlELDPDDADALYNLGIALEK 156
|
170
....*....|...
gi 28574254 319 QSDYDQAFQYYYQ 331
Cdd:COG0457 157 LGRYEEALELLEK 169
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
303-426 |
1.65e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.98 E-value: 1.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 303 AMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPANFVLpHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILG 382
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 28574254 383 SLYAHSNsqtKRDMAKTHLKKVTEQFPEDIEAWIELAQILEQND 426
Cdd:COG4783 80 LALLKAG---DYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
630-750 |
2.35e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 2.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 630 EKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMK 709
Cdd:COG4783 21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK 100
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 28574254 710 KFYKHnnVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQD 750
Cdd:COG4783 101 LDPEH--PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
524-765 |
6.52e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.95 E-value: 6.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 524 LKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILK-NPStstDAY 602
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALElDPD---DAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 603 SLIALGNfSLQTLHQPsrdkekerkhqEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCD 682
Cdd:COG0457 78 ALNNLGL-ALQALGRY-----------EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 683 VWLNIAHVYVEQKQYISAIQMYENCmKKFYKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIAVVLS 762
Cdd:COG0457 146 ALYNLGIALEKLGRYEEALELLEKL-EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
...
gi 28574254 763 RLA 765
Cdd:COG0457 225 LAL 227
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
132-325 |
1.53e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.80 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 132 LGRAYFCLlegDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCpANVRIGMAHCFLKM 211
Cdd:COG0457 14 LGLAYRRL---GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 212 GNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKvhhl 291
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE---AIEAYERALELDPDDADALYNLGIALEKLGRYEE---- 162
|
170 180 190
....*....|....*....|....*....|....
gi 28574254 292 ALHAFHNTENEAMRAESCYQLARSFHAQSDYDQA 325
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVL 196
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
339-537 |
2.06e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.41 E-value: 2.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 339 NFVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNsqtKRDMAKTHLKKVTEQFPEDIEAWIEL 418
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG---RYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 419 AQIL-EQNDLQASLSAYGTASSILRDKakyeipAEIQNNVASLHYRLGNLKMAKLTLESALkhatsEMDKDVkyyesiqV 497
Cdd:COG0457 83 GLALqALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERAL-----ELDPDD-------A 144
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 28574254 498 TMKYNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRL 537
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALG 184
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
190-429 |
2.32e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.41 E-value: 2.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 190 LRTNPNCpANVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANP 269
Cdd:COG0457 1 LELDPDD-AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEE---ALADYEQALELDPDDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 270 MVLNHLANHFFFKKDYQKvhhlALHAFHN-TENEAMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPaNFVLPHYGLG 348
Cdd:COG0457 77 EALNNLGLALQALGRYEE----ALEDYDKaLELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP-DDADALYNLG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 349 QMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNSQTKRDMAKTHLKKVTEQFPEDIEAWIELAQILEQNDLQ 428
Cdd:COG0457 152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
.
gi 28574254 429 A 429
Cdd:COG0457 232 A 232
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
344-783 |
6.92e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 66.65 E-value: 6.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 344 HYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYahsNSQTKRDMAKTHLKKVTEQFPEDIEAWIELAQI-L 422
Cdd:TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIY---LALGDYAAAEKELRKALSLGYPKNQVLPLLARAyL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 423 EQNDLQASLSAYGTASSILRDKAkyeipAEIQNNVASLHYRLGNLKMAKLTLESALKHATSEMDKdvkyyesiqvtmKYN 502
Cdd:TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGA-----AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA------------KLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 503 LARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQFA 582
Cdd:TIGR02917 165 LAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 583 LGQKNFETILKNPSTSTDAYSLIALGNFSlqtlhqpsrdkekeRKHQEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGC 662
Cdd:TIGR02917 245 EAEKHADALLKKAPNSPLAHYLKALVDFQ--------------KKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGN 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 663 VIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKKfyKHNNVEVMQYLARAYLRANKLVDAKAVLLK 742
Cdd:TIGR02917 311 LEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAK 388
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 28574254 743 ARRVAPqdtvllfNIAVVLSRLAMAILK--DEKSTLEIVLQAV 783
Cdd:TIGR02917 389 ATELDP-------ENAAARTQLGISKLSqgDPSEAIADLETAA 424
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
63-479 |
2.02e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.10 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 63 LEESRSDDATKEYRD------SDKDLMRALDMLAAHYVQEAyrekskdkkrelfmKATNLYTSADKIIMYDQSHLLGRAY 136
Cdd:TIGR02917 510 IQEGNPDDAIQRFEKvltidpKNLRAILALAGLYLRTGNEE--------------EAVAWLEKAAELNPQEIEPALALAQ 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 137 FCLLEGDkMDQADAQFNFVLNQSPSN--IPSLLGKACIAfnRKDYRGAMAFYKKALRTNP-NCPANVRIgmAHCFLKMGN 213
Cdd:TIGR02917 576 YYLGKGQ-LKKALAILNEAADAAPDSpeAWLMLGRAQLA--AGDLNKAVSSFKKLLALQPdSALALLLL--ADAYAVMKN 650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 214 PEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESNKLGVQMLSKAYTIDNANPMVLNHLAnhfFFKKDYQkvhhLAL 293
Cdd:TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY---LRQKDYP----AAI 723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 294 HAFHNTENEAMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPANFVLPHYgLGQMYIYRGDTENAAQCFEKVLKIQPG 373
Cdd:TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA-LAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 374 NYETMKILGSLYAhsnsQTKRDMAKTHLKKVTEQFPE-----DIEAWIelaqILEQNDLQASLSAYGTASSILRDKAkye 448
Cdd:TIGR02917 803 NAVVLNNLAWLYL----ELKDPRALEYAERALKLAPNipailDTLGWL----LVEKGEADRALPLLRKAVNIAPEAA--- 871
|
410 420 430
....*....|....*....|....*....|.
gi 28574254 449 ipaEIQNNVASLHYRLGNLKMAKLTLESALK 479
Cdd:TIGR02917 872 ---AIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
558-796 |
3.62e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.56 E-value: 3.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 558 LNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAYSLIALGNFSLqtlhqpsrdkekerKHQEKALAIFK 637
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL--------------GRYEEALADYE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 638 QVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKkfYKHNNV 717
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE--LDPDDA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28574254 718 EVMQYLARAYLRANKLVDAKAVLLKARRVAPQdtvLLFNIAVVLSRLAMAILKDEKSTLEIVLQAVHELELAQKYFQYL 796
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLEKLEAAALA---ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
131-249 |
1.52e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 131 LLGRAYFCLLEGDkMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPAnVRIGMAHCFLK 210
Cdd:COG4783 7 LYALAQALLLAGD-YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-ARLNLGLALLK 84
|
90 100 110
....*....|....*....|....*....|....*....
gi 28574254 211 MGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPE 249
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
126-376 |
1.65e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.93 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 126 YDQSHLLGRAYFCLLEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPAnVRIGMA 205
Cdd:COG3914 41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE-ALFNLG 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 206 HCFLKMGNPEKAKLAFERALQLDqqcvgaliglavlklnqlePESnklgvqmlskaytidnanpmvlnhlanhfffkkdy 285
Cdd:COG3914 120 NLLLALGRLEEALAALRRALALN-------------------PDF----------------------------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 286 qkvhhlalhafhnteneamrAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPaNFVLPHYGLGQMYIYRGDTENAAQCFE 365
Cdd:COG3914 146 --------------------AEAYLNLGEALRRLGRLEEAIAALRRALELDP-DNAEALNNLGNALQDLGRLEEAIAAYR 204
|
250
....*....|.
gi 28574254 366 KVLKIQPGNYE 376
Cdd:COG3914 205 RALELDPDNAD 215
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
414-605 |
1.34e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.24 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 414 AWIELAQILEQNDLQASLSAYGTASSILRDKAKYEIPAEIQNNVASLHYRLGNLKMAKLTLESALKHatsemdkDVKYYE 493
Cdd:COG3914 41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL-------NPDNAE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 494 SIqvtmkYNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGN 573
Cdd:COG3914 114 AL-----FNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGN 188
|
170 180 190
....*....|....*....|....*....|..
gi 28574254 574 LHLAKMQFALGQKNFETILKNPSTSTDAYSLI 605
Cdd:COG3914 189 ALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
344-434 |
3.28e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.47 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 344 HYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNSQTKrdmAKTHLKKVTEQFPEDIEAWIELAQIL- 422
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE---AEELLERALALDPDNPEALYLLGLAAf 96
|
90
....*....|..
gi 28574254 423 EQNDLQASLSAY 434
Cdd:COG4235 97 QQGDYAEAIAAW 108
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
156-245 |
3.55e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 3.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 156 LNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNcPANVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGAL 235
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD-NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90
....*....|
gi 28574254 236 IGLAVLKLNQ 245
Cdd:COG4235 89 YLLGLAAFQQ 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
138-228 |
3.40e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 3.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 138 CLLEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFyKKALRTNPNCPaNVRIGMAHCFLKMGNPEKA 217
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNA-EALLNLAELLLELGDYDEA 78
|
90
....*....|.
gi 28574254 218 KLAFERALQLD 228
Cdd:COG3063 79 LAYLERALELD 89
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
138-276 |
3.84e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 54.23 E-value: 3.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 138 CLLEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPAnVRIGMAHCFLKMGNPEKA 217
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE-ALNNLGNALQDLGRLEEA 199
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 218 KLAFERALQLDQQCVGALIGLAVLKLNQLE-PESNKLGVQMLSKAYTIDNANPMVLNHLA 276
Cdd:COG3914 200 IAAYRRALELDPDNADAHSNLLFALRQACDwEVYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
76-228 |
8.37e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 8.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 76 RDSDKDLMRALDMLAAHYVQEAYREKSKDKKRELFMKATNLYTSADKIIMYDQSHLLGRAYFCLLEGDKMDQADAQFNFV 155
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 28574254 156 LNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPaNVRIGMAHCFLKMGNPEKAKLAFERALQLD 228
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP-NAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
682-764 |
1.15e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 682 DVWLNIAHVYVEQKQYISAIQMYENCMKkfYKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIAVVL 761
Cdd:COG4235 18 EGWLLLGRAYLRLGRYDEALAAYEKALR--LDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
...
gi 28574254 762 SRL 764
Cdd:COG4235 96 FQQ 98
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
501-646 |
2.45e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.26 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 501 YNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQ 580
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574254 581 FALGQKNFETILKNPSTSTDAYSLIALgnfSLQTLHQPsrdkekerkhqEKALAIFKQVLRNDPRN 646
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLAR---AYRALGRP-----------DEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
631-767 |
2.84e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 2.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 631 KALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKK 710
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 28574254 711 fyKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTvllfNIAVVLSRLAMA 767
Cdd:COG4235 81 --DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA----PARLLEASIAEA 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
126-245 |
3.93e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 126 YDQSHLLGRAYFCLLEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPAnVRIGMA 205
Cdd:COG5010 17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE-LYYNLA 95
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 28574254 206 HCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQ 245
Cdd:COG5010 96 LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
316-410 |
4.34e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.32 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 316 FHAQSDYDQAFQYYYQSTQIAPaNFVLPHYGLGQMYIYRGDTENAAQcFEKVLKIQPGNYETMKILGSLYAHSNsqtKRD 395
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDP-DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG---DYD 76
|
90
....*....|....*
gi 28574254 396 MAKTHLKKVTEQFPE 410
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
302-409 |
5.65e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 302 EAMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPANFVLpHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKIL 381
Cdd:COG5010 50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL-YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL 128
|
90 100
....*....|....*....|....*...
gi 28574254 382 GSLYAHSNsqtKRDMAKTHLKKVTEQFP 409
Cdd:COG5010 129 AALLLSLG---QDDEAKAALQRALGTSP 153
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
166-228 |
6.34e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.55 E-value: 6.34e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28574254 166 LLGKACIAFNRKDYRGAMAFYKKALRTNPNcpaNVRI--GMAHCFLKMGNPEKAKLAFERALQLD 228
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPN---NVEAleLLGEILLELGDVEEAREVLLRAIELD 64
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
625-710 |
7.43e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 7.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 625 ERKHQEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDiFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMY 704
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
....*.
gi 28574254 705 ENCMKK 710
Cdd:COG3063 83 ERALEL 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
131-228 |
1.22e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 131 LLGRAYFCLlegDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPaNVRIGMAHCFLK 210
Cdd:COG4235 22 LLGRAYLRL---GRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP-EALYLLGLAAFQ 97
|
90
....*....|....*...
gi 28574254 211 MGNPEKAKLAFERALQLD 228
Cdd:COG4235 98 QGDYAEAIAAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
229-374 |
2.21e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 229 QQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKvhhlALHAFHntenEAMR--- 305
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDE---AEALLEKALELDPDNPEAFALLGEILLQLGDLDE----AIVLLH----EALEldp 69
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28574254 306 --AESCYQLARSFHAQSDYDQAFQYYYQSTQIAPaNFVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGN 374
Cdd:COG4783 70 dePEARLNLGLALLKAGDYDEALALLEKALKLDP-EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
397-529 |
2.63e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 397 AKTHLKKVTEQFPEDIEAWIELAQI-LEQNDLQASLSAYGTASSILRDKakyeipAEIQNNVASLHYRLGNLKMAKLTLE 475
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAyLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 28574254 476 SALKHAtsemDKDVKYYesiqvtmkYNLARLNEAMSSYDVADKLYKEILKEHPN 529
Cdd:COG4235 76 RALALD----PDNPEAL--------YLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
314-414 |
3.25e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 314 RSFHAQSDYDQAFQYYYQSTQIAPANFVLP--HYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYetmKILGSLYAHSNSQ 391
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSP---KAPDALLKLGLSY 77
|
90 100
....*....|....*....|....*.
gi 28574254 392 TK---RDMAKTHLKKVTEQFPEDIEA 414
Cdd:COG1729 78 LElgdYDKARATLEELIKKYPDSEAA 103
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
137-226 |
3.52e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 3.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 137 FCLLEGDKMDQADAQFNFVLNQSPSNI---PSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCP--ANVRIGMAHCFLKM 211
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkaPDALLKLGLSYLEL 80
|
90
....*....|....*
gi 28574254 212 GNPEKAKLAFERALQ 226
Cdd:COG1729 81 GDYDKARATLEELIK 95
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
301-376 |
4.35e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 4.35e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28574254 301 NEAMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPANFVLP--HYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYE 376
Cdd:COG1729 25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdaLLKLGLSYLELGDYDKARATLEELIKKYPDSEA 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
310-425 |
7.37e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 7.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 310 YQLARSFHAQSDYDQAFQYYYQSTQIAPANFVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSN 389
Cdd:COG5010 23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100 110
....*....|....*....|....*....|....*.
gi 28574254 390 sqtKRDMAKTHLKKVTEQFPEDIEAWIELAQILEQN 425
Cdd:COG5010 103 ---DKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
625-709 |
8.42e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 8.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 625 ERKHQEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMY 704
Cdd:COG5010 66 KLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145
|
....*
gi 28574254 705 ENCMK 709
Cdd:COG5010 146 QRALG 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
566-710 |
1.46e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 566 DARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAYSLiaLGNFSLQTlhqpsrdkekerKHQEKALAIFKQVLRNDPR 645
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFAL--LGEILLQL------------GDLDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28574254 646 NIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMKK 710
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
177-230 |
1.58e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 40.65 E-value: 1.58e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 28574254 177 KDYRGAMAFYKKALRTNPNCPAnVRIGMAHCFLKMGNPEKAKLAFERALQLDQQ 230
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAE-ARLGLAEALLALGRLDEAEALLAALPAADPD 54
|
|
| NRDE-2 |
pfam08424 |
NRDE-2, necessary for RNA interference; This is a family of eukaryotic proteins. Eukaryotic ... |
401-532 |
1.71e-04 |
|
NRDE-2, necessary for RNA interference; This is a family of eukaryotic proteins. Eukaryotic cells express a wide variety of endogenous small regulatory RNAs that regulate heterochromatin formation, developmental timing, defence against parasitic nucleic acids, and genome rearrangement. Many small regulatory RNAs are thought to function in nuclei, and in plants and fungi small interfering (si)RNAs associate with nascent transcripts and direct chromatin and/or DNA modifications. This family protein, NRDE-2, is required for small interfering (si)RNA-mediated silencing in nuclei. NRDE-2 associates with the Argonaute protein NRDE-3 within nuclei and is recruited by NRDE-3/siRNA complexes to nascent transcripts that have been targeted by RNA interference, RNAi, the process whereby double-stranded RNA (dsRNA) directs the sequence-specific degradation of mRNA.
Pssm-ID: 462472 Cd Length: 316 Bit Score: 45.01 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 401 LKKVTEQFPEDIEAWIELAqileqnDLQASLSAYGTASSILRDKAKYEIPAEIQnnvaslhyrlgnLKMakltLESALKH 480
Cdd:pfam08424 2 LNRRVKENPEDIDAWLELI------EHQDTLLRAGSDSDRSLTKAERRALAEIK------------LSI----LEKALKA 59
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 28574254 481 ATSEMDKDvkyyesiQVTmkynLARLNEAMSSYD--VADKLYKEILKEHPNYID 532
Cdd:pfam08424 60 NPSNPDRE-------RLL----LGYLKEGAKIWDskKLAKEWEELLKEHPNSIE 102
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
198-339 |
2.34e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 198 ANVRIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANPMVLNHLAN 277
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDE---AIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28574254 278 HFFFKKDYQKvhhlALHAFhnteNEAMR-----AESCYQLARSFHAQSDYDQAFQYYYQSTQIAPAN 339
Cdd:COG4783 81 ALLKAGDYDE----ALALL----EKALKldpehPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
173-278 |
2.67e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 44.80 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 173 AFNRKDYRGAMAFYKKALRTNPNCpANVRIGMAHCFLKMGNPEKAKLAFERALQLDQqcvgALIGLAVLKLNQLEPESNK 252
Cdd:PRK11788 190 ALARGDLDAARALLKKALAADPQC-VRASILLGDLALAQGDYAAAIEALERVEEQDP----EYLSEVLPKLMECYQALGD 264
|
90 100
....*....|....*....|....*...
gi 28574254 253 L--GVQMLSKAYTiDNANPMVLNHLANH 278
Cdd:PRK11788 265 EaeGLEFLRRALE-EYPGADLLLALAQL 291
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
275-384 |
3.14e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 275 LANHFFFKKDYQKvhhlALHAFHN-TENEAMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPANfVLPHYGLGQMYIY 353
Cdd:COG4235 23 LGRAYLRLGRYDE----ALAAYEKaLRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-PEALYLLGLAAFQ 97
|
90 100 110
....*....|....*....|....*....|.
gi 28574254 354 RGDTENAAQCFEKVLKIQPGNYETMKILGSL 384
Cdd:COG4235 98 QGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
139-434 |
3.63e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 44.13 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 139 LLEGDkMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPANVRIGMAHCFLKMGNPEKAk 218
Cdd:COG3071 27 LAEGR-YARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQGQAEQA- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 219 laferalqldqqcvgaligLAVLK-LNQLEPeSNKLGVQMLSKAYTIDNANPMVLN---HLANHFFFKKDY--QKVHHLA 292
Cdd:COG3071 105 -------------------LATLEaLRAGAP-RHPQVLRLLLQAYRQLGDWEELLEllpALRKHKALSAEEaqALERRAY 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 293 LHAFHNTENEAMRAESCYQ---------------LARSFHAQSDYDQAFQYYYQSTQIAPANFVLPHYGLGQMyiyrGDT 357
Cdd:COG3071 165 LGLLRQAARDAEALKALWKalpraerrdpelaaaYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRLQG----GDP 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28574254 358 ENAAQCFEKVLKIQPGNYETMKILGSLYAHSNsqtKRDMAKTHLKKVTEQFPeDIEAWIELAQILEQ-NDLQASLSAY 434
Cdd:COG3071 241 AKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQ---LWGKAREYLEAALALRP-SAEAYAELARLLEQlGDPEEAAEHY 314
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
665-748 |
4.98e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 4.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 665 EARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQmYENCMKkfYKHNNVEVMQYLARAYLRANKLVDAKAVLLKAR 744
Cdd:COG3063 10 EAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALK--LDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
|
....
gi 28574254 745 RVAP 748
Cdd:COG3063 87 ELDP 90
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
682-794 |
5.07e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 682 DVWLNIAHVYVEQKQYISAIQMYENCMKKfyKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIAVVL 761
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALEL--DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 28574254 762 SRL-----AMAILK----------DEKSTLEIVLQAVHELELAQKYFQ 794
Cdd:COG4783 83 LKAgdydeALALLEkalkldpehpEAYLRLARAYRALGRPDEAIAALE 130
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
351-443 |
5.88e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 351 YIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAhsnSQTKRDMAKThLKKVTEQFPEDIEAWIELAQIL-EQNDLQA 429
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLL---EQGRYDEAIA-LEKALKLDPNNAEALLNLAELLlELGDYDE 77
|
90
....*....|....
gi 28574254 430 SLSAYGTASSILRD 443
Cdd:COG3063 78 ALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
690-764 |
6.00e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 6.00e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28574254 690 VYVEQKQYISAIQMYENCMKKFykHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQDTVLLFNIAVVLSRL 764
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLD--PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
630-709 |
6.51e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 630 EKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCMK 709
Cdd:COG4235 34 DEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
360-479 |
6.97e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 6.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 360 AAQCFEKVLKIQPGNYETMKILGSLYAHSNsqtKRDMAKTHLKKVTEQFPEDIEAWIELAQIL-EQNDLQASLSAYGTAS 438
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLG---RYDEALAAYEKALRLDPDNADALLDLAEALlAAGDTEEAEELLERAL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 28574254 439 SILRDkakyeiPAEIQNNVASLHYRLGNLKMAKLTLESALK 479
Cdd:COG4235 79 ALDPD------NPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
306-376 |
7.08e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 7.08e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28574254 306 AESCYQLARSFHAQSDYDQAFQYYyQSTQIAPaNFVLPHYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYE 376
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAIALE-KALKLDP-NNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
629-748 |
7.32e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 629 QEKALAIFKQVLRNDPRNIWATNGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISAIQMYENCM 708
Cdd:COG5010 36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 28574254 709 KkfYKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAP 748
Cdd:COG5010 116 A--LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
144-247 |
1.06e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.82 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 144 KMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNcPANVRIGMAHCFLKMGNPEKAKLAFER 223
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD-YAYAYLNRGIALYYLGRYELAIADLEK 166
|
90 100
....*....|....*....|....*.
gi 28574254 224 ALQLDQQCVGALI--GLAVLKLNQLE 247
Cdd:COG4785 167 ALELDPNDPERALwlYLAERKLDPEK 192
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
207-287 |
1.10e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 207 CFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklgVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQ 286
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE----AIALEKALKLDPNNAEALLNLAELLLELGDYD 76
|
.
gi 28574254 287 K 287
Cdd:COG3063 77 E 77
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
132-245 |
1.32e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 41.55 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 132 LGRAYFCLLEGDkMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTnPNCP----ANVRIGMahC 207
Cdd:TIGR02521 69 LALALYYQQLGE-LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPqparSLENAGL--C 144
|
90 100 110
....*....|....*....|....*....|....*...
gi 28574254 208 FLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQ 245
Cdd:TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
501-604 |
1.40e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 501 YNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQ 580
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100
|
90 100
....*....|....*....|....
gi 28574254 581 FALGQKNFETILKNPSTSTDAYSL 604
Cdd:COG4235 101 YAEAIAAWQKLLALLPADAPARLL 124
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
140-230 |
1.71e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 42.76 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 140 LEGDKMDQADAQFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPANVRiGMAHCFlKMGNPEKAkL 219
Cdd:PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR-GLANLY-RQQSPEKA-L 438
|
90 100
....*....|....*....|....*....
gi 28574254 220 AF---------------ERALQLD---QQ 230
Cdd:PRK11447 439 AFiaslsasqrrsiddiERSLQNDrlaQQ 467
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
467-675 |
1.88e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 42.28 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 467 LKMAKLTLEsaLKHATsemdkdvKYYESIQVTMK---------YNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRL 537
Cdd:TIGR00990 369 IKRASMNLE--LGDPD-------KAEEDFDKALKlnsedpdiyYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 538 GCMARDKGLIFVASDFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTDAYSLIA-LGNFSLqTLH 616
Cdd:TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLpLINKAL-ALF 518
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 28574254 617 QPSRDKEKERKHQEKALAIfkqvlrnDPRNIWATNGIGAVLAHKGCVIEARDIFAQVRE 675
Cdd:TIGR00990 519 QWKQDFIEAENLCEKALII-------DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
513-594 |
2.03e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 513 YDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKdALNINNDNPDARSLLGNLHLAKMQFALGQKNFETIL 592
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
|
..
gi 28574254 593 KN 594
Cdd:COG3063 87 EL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
410-564 |
2.15e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.79 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 410 EDIEAWIELAQIL-EQNDLQASLSAYGTASSILRDKAkyeipaEIQNNVASLHYRLGNLKMAKLTLESALKHATSEmdkd 488
Cdd:COG4783 2 ACAEALYALAQALlLAGDYDEAEALLEKALELDPDNP------EAFALLGEILLQLGDLDEAIVLLHEALELDPDE---- 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574254 489 vkyyesiqVTMKYNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVASDFFKDALNINNDN 564
Cdd:COG4783 72 --------PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
280-644 |
2.97e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.05 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 280 FFKKDYQKVHHLALHAFHNTENEAMRAEScyqLARSFHAQSDYDQAFQYYYQSTQIAPANFVLPHYGLGQMYIYRGDTEN 359
Cdd:COG3071 27 LAEGRYARAEKLLSKAAEHSEAPLLAYLL---AARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQGQAEQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 360 AAQCFEKVLKIQPGNYETMKILGSLYAHSNsqtkrdmakthlkkvteqfpedieAWIELAQILEQndlqaslsaygtass 439
Cdd:COG3071 104 ALATLEALRAGAPRHPQVLRLLLQAYRQLG------------------------DWEELLELLPA--------------- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 440 iLRdKAKYEIPAEIQNNVASLHyrLGNLKMAKLTLEsALKHATSEMDKDVKYYESIQVTMKYNLARLNEamssYDVADKL 519
Cdd:COG3071 145 -LR-KHKALSAEEAQALERRAY--LGLLRQAARDAE-ALKALWKALPRAERRDPELAAAYARALIALGD----HDEAERL 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 520 YKEILKEHPN--YIDCYLRLGCMARDKGLifvasDFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNpst 597
Cdd:COG3071 216 LREALKRQWDprLVRLYGRLQGGDPAKQL-----KRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALAL--- 287
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 28574254 598 STDAYSLIALGnfslQTLHQpsrdkekeRKHQEKALAIFKQVLRNDP 644
Cdd:COG3071 288 RPSAEAYAELA----RLLEQ--------LGDPEEAAEHYRKALALAL 322
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
318-442 |
3.46e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.61 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 318 AQSDYDQAFQYYYQSTQIAPAN-FVLphYGLGQMYIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYaHSNSQTKRDM 396
Cdd:PRK11447 363 KANNLAQAERLYQQARQVDNTDsYAV--LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALA 439
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 28574254 397 AKTHLKKVTEQFPEDIEAWIELAQILEQNDLQASLSAYGTASSILR 442
Cdd:PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
207-287 |
5.32e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 207 CFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPESnklGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQ 286
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE---AKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
.
gi 28574254 287 K 287
Cdd:COG5010 140 E 140
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
198-231 |
6.93e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 6.93e-03
10 20 30
....*....|....*....|....*....|....
gi 28574254 198 ANVRIGMAHCFLKMGNPEKAKLAFERALQLDQQC 231
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
344-374 |
7.01e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 7.01e-03
10 20 30
....*....|....*....|....*....|.
gi 28574254 344 HYGLGQMYIYRGDTENAAQCFEKVLKIQPGN 374
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
74-227 |
8.56e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 40.35 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 74 EYRDSDKDLMRALDMLAAH---YVQ---EAYREKSKDKKRELFMKATNLYTSADKIIMYDQShllgrayfCLLEGDKMDQ 147
Cdd:TIGR00990 414 EFAQAGKDYQKSIDLDPDFifsHIQlgvTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE--------LLLDQNKFDE 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 148 ADAQFNFVLNQSPS------NIPSLLGKACIAFNRK-DYRGAMAFYKKALRTNPNCPANVrIGMAHCFLKMGNPEKAKLA 220
Cdd:TIGR00990 486 AIEKFDTAIELEKEtkpmymNVLPLINKALALFQWKqDFIEAENLCEKALIIDPECDIAV-ATMAQLLLQQGDVDEALKL 564
|
....*..
gi 28574254 221 FERALQL 227
Cdd:TIGR00990 565 FERAAEL 571
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
684-853 |
8.91e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.09 E-value: 8.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 684 WLNIAHVYVEQKQYISAIQMYENCMKKFYKhNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAP----QDTVLLFniav 759
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALTGIFA-DDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfksSDAHLLY---- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574254 760 vlsrlAMAILKDEKstleiVLQAVHELELAQKYF----------QYLSVHGDKNrfnievagiEA-STCQDLLSQAQYHV 828
Cdd:COG4700 167 -----ARALEALGD-----LEAAEAELEALARRYsgpearyryaKFLARQGRTA---------EAkELLEEILDEAKHMP 227
|
170 180
....*....|....*....|....*
gi 28574254 829 GRARRIdeeERSLRRKQEEEREAFK 853
Cdd:COG4700 228 KHYRRL---NREWIREAKKLLKSLR 249
|
|
| |
