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Conserved domains on  [gi|28574640|ref|NP_788550|]
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iso glutaminyl cyclase, isoform B [Drosophila melanogaster]

Protein Classification

glutaminyl-peptide cyclotransferase family protein( domain architecture ID 10133850)

glutaminyl-peptide cyclotransferase (QPCT) family protein such as QPCT that is responsible for the biosynthesis of pyroglutamyl peptides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
M28_QC_like cd03880
M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) ...
56-346 1.76e-160

M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to their receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease.


:

Pssm-ID: 349876 [Multi-domain]  Cd Length: 305  Bit Score: 451.31  E-value: 1.76e-160
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  56 SNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLD--WDVEVNSFHDHAPIkGKLHFHNIIATLNPNAERYLV 133
Cdd:cd03880   8 ELSDDNEHFNNLLAPILIPRVPGSPGHREVRNFIIDFLKSLLagWTVELDNFTEKTPI-GEVTFTNIIATLNPPAKRYLV 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 134 LSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLK----PLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLA 209
Cdd:cd03880  87 LACHYDSKYFPEGEFIGATDSAVPCAMLLYLARSLDAALTrkwpKSKKSDLGLQLIFFDGEEAFEEWSDTDSLYGSRHLA 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 210 KKWH---------HEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSgvaqrdpTRY 280
Cdd:cd03880 167 AKWEstpyppgsrYSGRLDRIDLLVLLDLLGAPNPTFPSYFPNTHGWYKRLADIEKRLRKLGLLESHPSE-------RKY 239
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574640 281 FQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 346
Cdd:cd03880 240 FQPHSKYTPDIEDDHIPFLERGVPVLHLIPSPFPSVWHTLDDDEENLDYPTIRNWNKILRVFVAEY 305
 
Name Accession Description Interval E-value
M28_QC_like cd03880
M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) ...
56-346 1.76e-160

M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to their receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease.


Pssm-ID: 349876 [Multi-domain]  Cd Length: 305  Bit Score: 451.31  E-value: 1.76e-160
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  56 SNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLD--WDVEVNSFHDHAPIkGKLHFHNIIATLNPNAERYLV 133
Cdd:cd03880   8 ELSDDNEHFNNLLAPILIPRVPGSPGHREVRNFIIDFLKSLLagWTVELDNFTEKTPI-GEVTFTNIIATLNPPAKRYLV 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 134 LSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLK----PLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLA 209
Cdd:cd03880  87 LACHYDSKYFPEGEFIGATDSAVPCAMLLYLARSLDAALTrkwpKSKKSDLGLQLIFFDGEEAFEEWSDTDSLYGSRHLA 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 210 KKWH---------HEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSgvaqrdpTRY 280
Cdd:cd03880 167 AKWEstpyppgsrYSGRLDRIDLLVLLDLLGAPNPTFPSYFPNTHGWYKRLADIEKRLRKLGLLESHPSE-------RKY 239
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574640 281 FQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 346
Cdd:cd03880 240 FQPHSKYTPDIEDDHIPFLERGVPVLHLIPSPFPSVWHTLDDDEENLDYPTIRNWNKILRVFVAEY 305
Peptidase_M28 pfam04389
Peptidase family M28;
119-343 2.08e-52

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 171.70  E-value: 2.08e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640   119 NIIATLNPNA-ERYLVLSCHYDSKYMpGVeflGATDSAVPCAMLLNLAQVLQEQLKPlkksKLSLMLLFFDGEEAfeewg 197
Cdd:pfam04389   1 NVIAKLPGKApDEVVLLSAHYDSVGT-GP---GADDNASGVAALLELARVLAAGQRP----KRSVRFLFFDAEEA----- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640   198 pkdSIYGARHLAKKwHHEgkLDRIDMLVLLDLLGAPDPAFYSFFENTESWymriqsvetrlaklqLLERYASSGVAQRDP 277
Cdd:pfam04389  68 ---GLLGSHHFAKS-HPP--LKKIRAVINLDMIGSGGPALLFQSGPKGSS---------------LLEKYLKAAAKPYGV 126
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574640   278 TRYFQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFA 343
Cdd:pfam04389 127 TLAEDPFQERGGPGRSDHAPFIKAGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV 192
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
118-354 6.96e-29

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 112.15  E-value: 6.96e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 118 HNIIATLNP--NAERYLVLSCHYDSKympGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSklsLMLLFFDGEEafee 195
Cdd:COG2234  47 RNVIAEIPGtdPPDEVVVLGAHYDSV---GSIGPGADDNASGVAALLELARALAALGPKPKRT---IRFVAFGAEE---- 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 196 WGpkdsIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTEswymriqsveTRLAKLQLLERYASSGVAQR 275
Cdd:COG2234 117 QG----LLGSRYYAE--NLKAPLEKIVAVLNLDMIGRGGPRNYLYVDGDG----------GSPELADLLEAAAKAYLPGL 180
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 276 D-PTRYFQSQAMRSsfiedDHIPFLRRNVPILHLIPVPFPS--VWHTPDDNASVIDYattDNLALIIRL-FALEYLLAGT 351
Cdd:COG2234 181 GvDPPEETGGYGRS-----DHAPFAKAGIPALFLFTGAEDYhpDYHTPSDTLDKIDL---DALAKVAQLlAALVYELANA 252

                ...
gi 28574640 352 EAK 354
Cdd:COG2234 253 DER 255
 
Name Accession Description Interval E-value
M28_QC_like cd03880
M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) ...
56-346 1.76e-160

M28 Zn-peptidase glutaminyl cyclase; Peptidase M28 family, glutaminyl cyclase (QC; EC 2.3.2.5) subfamily. QC is involved in N-terminal glutamine cyclization of many endocrine peptides and is typically abundant in brain tissue. N-terminal glutamine residue cyclization is an important post-translational event in the processing of numerous bioactive proteins, including neuropeptides, hormones, and cytokines during their maturation in the secretory pathway. The N-terminal pGlu protects them from exopeptidase degradation and/or enables them to have proper conformation for binding to their receptors. QCs are highly conserved from yeast to human. In humans, several genetic diseases, such as osteoporosis, appear to result from mutations of the QC gene. N-terminal glutamate cyclization into pyroglutamate (pGlu) is a reaction that may be related to the formation of several plaque-forming peptides, such as amyloid-(A) peptides and collagen-like Alzheimer amyloid plaque component, which play a pivotal role in Alzheimer's disease.


Pssm-ID: 349876 [Multi-domain]  Cd Length: 305  Bit Score: 451.31  E-value: 1.76e-160
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  56 SNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLD--WDVEVNSFHDHAPIkGKLHFHNIIATLNPNAERYLV 133
Cdd:cd03880   8 ELSDDNEHFNNLLAPILIPRVPGSPGHREVRNFIIDFLKSLLagWTVELDNFTEKTPI-GEVTFTNIIATLNPPAKRYLV 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 134 LSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLK----PLKKSKLSLMLLFFDGEEAFEEWGPKDSIYGARHLA 209
Cdd:cd03880  87 LACHYDSKYFPEGEFIGATDSAVPCAMLLYLARSLDAALTrkwpKSKKSDLGLQLIFFDGEEAFEEWSDTDSLYGSRHLA 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 210 KKWH---------HEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSgvaqrdpTRY 280
Cdd:cd03880 167 AKWEstpyppgsrYSGRLDRIDLLVLLDLLGAPNPTFPSYFPNTHGWYKRLADIEKRLRKLGLLESHPSE-------RKY 239
                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574640 281 FQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 346
Cdd:cd03880 240 FQPHSKYTPDIEDDHIPFLERGVPVLHLIPSPFPSVWHTLDDDEENLDYPTIRNWNKILRVFVAEY 305
Peptidase_M28 pfam04389
Peptidase family M28;
119-343 2.08e-52

Peptidase family M28;


Pssm-ID: 461288 [Multi-domain]  Cd Length: 192  Bit Score: 171.70  E-value: 2.08e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640   119 NIIATLNPNA-ERYLVLSCHYDSKYMpGVeflGATDSAVPCAMLLNLAQVLQEQLKPlkksKLSLMLLFFDGEEAfeewg 197
Cdd:pfam04389   1 NVIAKLPGKApDEVVLLSAHYDSVGT-GP---GADDNASGVAALLELARVLAAGQRP----KRSVRFLFFDAEEA----- 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640   198 pkdSIYGARHLAKKwHHEgkLDRIDMLVLLDLLGAPDPAFYSFFENTESWymriqsvetrlaklqLLERYASSGVAQRDP 277
Cdd:pfam04389  68 ---GLLGSHHFAKS-HPP--LKKIRAVINLDMIGSGGPALLFQSGPKGSS---------------LLEKYLKAAAKPYGV 126
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28574640   278 TRYFQSQAMRSSFIEDDHIPFLRRNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFA 343
Cdd:pfam04389 127 TLAEDPFQERGGPGRSDHAPFIKAGIPGLDLAFTDFGYRYHTPADTIDNIDPGTLQRIGDLVLALV 192
M28 cd02690
M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also ...
117-346 4.75e-33

M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Peptidase M28 family (also called aminopeptidase Y family) contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Plasma glutamate carboxypeptidase (PGCP) and glutamate carboxypeptidase II (NAALADase) hydrolyze dipeptides. Several members of the M28 peptidase family have PA domain inserts which may participate in substrate binding and/or in promoting conformational changes, which influence the stability and accessibility of the site to substrate. These include prostate-specific membrane antigen (PSMA), yeast aminopeptidase S (SGAP), human transferrin receptors (TfR1 and TfR2), plasma glutamate carboxypeptidase (PGCP) and several predicted aminopeptidases where relatively little is known about them. Also included in the M28 family are glutaminyl cyclases (QC), which are involved in N-terminal glutamine cyclization of many endocrine peptides. Nicastrin and nicalin belong to this family but lack the amino-acid conservation required for catalytically active aminopeptidases.


Pssm-ID: 349868 [Multi-domain]  Cd Length: 202  Bit Score: 121.68  E-value: 4.75e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 117 FHNIIATLNP--NAERYLVLSCHYDSKYmpgvEFLGATDSAVPCAMLLNLAQVLQE-QLKPlkksKLSLMLLFFDGEEAF 193
Cdd:cd02690   1 GYNVIATIKGsdKPDEVILIGAHYDSVP----LSPGANDNASGVAVLLELARVLSKlQLKP----KRSIRFAFWDAEELG 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 194 eewgpkdsIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFY--SFFENTESWYMRIQSVETRLAKLQLLERYassg 271
Cdd:cd02690  73 --------LLGSKYYAE--QLLSSLKNIRAALNLDMIGGAGPDLYlqTAPGNDALVEKLLRALAHELENVVYTVVY---- 138
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28574640 272 VAQRDPTRyfqsqamrssfieDDHIPFLRRNVPILHLIPVP--FPSVWHTPDDNASVIDYATTDNLALIIRLFALEY 346
Cdd:cd02690 139 KEDGGTGG-------------SDHRPFLARGIPAASLIQSEsyNFPYYHTTQDTLENIDKDTLKRAGDILASFLYRL 202
Iap COG2234
Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein ...
118-354 6.96e-29

Zn-dependent amino- or carboxypeptidase, M28 family [Posttranslational modification, protein turnover, chaperones, Amino acid transport and metabolism];


Pssm-ID: 441835 [Multi-domain]  Cd Length: 257  Bit Score: 112.15  E-value: 6.96e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 118 HNIIATLNP--NAERYLVLSCHYDSKympGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSklsLMLLFFDGEEafee 195
Cdd:COG2234  47 RNVIAEIPGtdPPDEVVVLGAHYDSV---GSIGPGADDNASGVAALLELARALAALGPKPKRT---IRFVAFGAEE---- 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 196 WGpkdsIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTEswymriqsveTRLAKLQLLERYASSGVAQR 275
Cdd:COG2234 117 QG----LLGSRYYAE--NLKAPLEKIVAVLNLDMIGRGGPRNYLYVDGDG----------GSPELADLLEAAAKAYLPGL 180
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 276 D-PTRYFQSQAMRSsfiedDHIPFLRRNVPILHLIPVPFPS--VWHTPDDNASVIDYattDNLALIIRL-FALEYLLAGT 351
Cdd:COG2234 181 GvDPPEETGGYGRS-----DHAPFAKAGIPALFLFTGAEDYhpDYHTPSDTLDKIDL---DALAKVAQLlAALVYELANA 252

                ...
gi 28574640 352 EAK 354
Cdd:COG2234 253 DER 255
M28_like cd08656
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
74-331 1.49e-16

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349943 [Multi-domain]  Cd Length: 287  Bit Score: 78.72  E-value: 1.49e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  74 PRVVGTTNHSIVREYIVQSLRDLDWDVEvNSFHDHAPIKG-KLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVE----- 147
Cdd:cd08656  16 PRVPNTAAHKACGEYLAGKLEAFGAKVY-NQYADLIAYDGtILKARNIIGAYNPESKKRVLLCAHWDSRPYADNDadpkk 94
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 148 ----FLGATDSAVPCAMLLNLAQVLQEQlkplkKSKLSLMLLFFDGEE----AFEEWGPKDSIY--GARHLAKKWHHEGK 217
Cdd:cd08656  95 hhtpILGANDGASGVGALLEIARQIQQQ-----APAIGIDIIFFDAEDygtpEFYEGKYKSDTWclGSQYWARNPHVQGY 169
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 218 LDRIDmlVLLDLLGAPDPAFYsffenteswymriqsvetrlaKLQLLERYAssgvaqRDPTRYFQSQAMRSSF------- 290
Cdd:cd08656 170 NARYG--ILLD*VGGKNATFL---------------------KEQYSLRTA------RDIVKKIWKTAKRLGYgkyfvpe 220
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 28574640 291 ----IEDDHIPFLR-RNVPILHLI------PVPFPSVWHTPDDNASVIDYAT 331
Cdd:cd08656 221 aggtITDDHLYVNQlARIPTIDIInydperPTGFPSYWHTIQDN*ENIDKET 272
M28_like cd03877
M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family ...
118-342 3.96e-13

M28 Zn-peptidase, many containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Some proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349874 [Multi-domain]  Cd Length: 206  Bit Score: 67.65  E-value: 3.96e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 118 HNIIATLNPN--AERYLVLSCHYDS-KYMPGVEFL----GATDSAVPCAMLLNLAQVLQEQLKPlkksKLSLMLLFFDGE 190
Cdd:cd03877   2 HNVVGVLEGSdlPDETIVIGAHYDHlGIGGGDSGDkiynGADDNASGVAAVLELARYFAKQKTP----KRSIVFAAFTAE 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 191 EAfeewgpkdSIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESwymriqsveTRLAK-LQLLERYAS 269
Cdd:cd03877  78 EK--------GLLGSKYFAE--NPKFPLDKIVAMLNLDMIGRLGRSKDVYLIGSGS---------SELENlLKKANKAAG 138
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 28574640 270 SGV--AQRDPTRYFQSqamrssfiedDHIPFLRRNVPILHLIPVPFPSvWHTPDDNASVIDYattDNLALIIRLF 342
Cdd:cd03877 139 RVLskDPLPEWGFFRS----------DHYPFAKAGVPALYFFTGLHDD-YHKPSDDYEKIDY---EGMARVVNLI 199
M28_Fxna_like cd03875
M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic ...
63-193 2.95e-12

M28 Zn-peptidase Endoplasmic reticulum metallopeptidase 1; Peptidase family M28; Endoplasmic reticulum metallopeptidase 1 (ERMP1; Felix-ina, FXNA or Fxna peptidase; KIAA1815) subfamily. ERMP1 is a multi-pass membrane protein located in the endoplasmic reticulum membrane. In humans, Fxna may play a crucial role in processing proteins required for the organization of somatic cells and oocytes into discrete follicular structures, although which proteins are hydrolyzed has not yet been determined. Another member of this subfamily is the 24-kDa vacuolar protein (VP24) which is probably involved in the formation of intravacuolar pigmented globules (cyanoplasts) in highly anthocyanin-containing vacuoles; however, the biological function of the C-terminal region which includes the putative transmembrane metallopeptidase domain is unknown.


Pssm-ID: 349872 [Multi-domain]  Cd Length: 307  Bit Score: 66.46  E-value: 2.95e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  63 HLREAIDKIliPRVVGTTNHSIVREYIVQSLRDL-------DWDVEV-----NSFHDHAPIKGKLHFH---NIIATLNP- 126
Cdd:cd03875  12 DLQVLISIG--PHPYGSHNNDKVRDYLLARVEEIkerananGLEVEVqddtgSGSFNFLSSGMTLVYFevtNIVVRISGk 89
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28574640 127 --NAERYLVLSCHYDSKyMPGVeflGATDSAVPCAMLLNLAQVLQEQLKPLKKsklSLMLLFFDGEEAF 193
Cdd:cd03875  90 nsNSLPALLLNAHFDSV-PTSP---GATDDGMGVAVMLEVLRYLSKSGHQPKR---DIIFLFNGAEENG 151
M28_like_PA_PDZ_associated cd05663
M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ ...
75-342 1.11e-11

M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ domain; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.


Pssm-ID: 349913 [Multi-domain]  Cd Length: 266  Bit Score: 64.40  E-value: 1.11e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  75 RVVGTTNHSIVREYIVQSLRDLDW---DVEVNSFHDHAPIKGKLHfhNIIATL---NPNAERYLVLSCHYDSKYMPGVEF 148
Cdd:cd05663  12 RLTGTKGEKLAADYIAQRFEELGLepgLDNGTYFQPFEFTTGTGR--NVIGVLpgkGDVADETVVVGAHYDHLGYGGEGS 89
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 149 L----------GATDSAVPCAMLLNLAQVLQEQLKPLKKSKlSLMLLFFDGEEAfeewgpkdSIYGARHLAKKWHHEGKl 218
Cdd:cd05663  90 LargdeslihnGADDNASGVAAMLELAAKLVDSDTSLALSR-NLVFIAFSGEEL--------GLLGSKHFVKNPPFPIK- 159
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 219 dRIDMLVLLDLLGapdpafySFFENTeswyMRIQSVETRLAKLQLLERYASsgvaqrdpTRYFQSQAMRSSFIEDDHIPF 298
Cdd:cd05663 160 -NTVYMINMDMVG-------RLRDNK----LIVQGTGTSPGWEQLVQARNK--------ATGFKLILDPTGYGPSDHTSF 219
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 28574640 299 LRRNVPILHLipvpFP---SVWHTPDDNASVIDYattDNLALIIRLF 342
Cdd:cd05663 220 YLDDVPVLHF----FTgahSDYHRPSDDSDKLNY---DGMADIADFA 259
M28_like_PA cd05661
M28 Zn-peptidase containing a PA domain insert; Peptidase family M28 (also called ...
74-339 2.35e-11

M28 Zn-peptidase containing a PA domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.


Pssm-ID: 349911 [Multi-domain]  Cd Length: 262  Bit Score: 63.36  E-value: 2.35e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  74 PRVVGTTNHSIVREYIVQSLRDLDWDVEVNSFHDhapikgklhfHNIIATLNPNA----ERYLVLSCHYDSkympgVEFL 149
Cdd:cd05661  27 IGVAGTPEELKAARYIEQQLKSLGYEVEVQPFTS----------HNVIATKKPDNnknnNDIIIVTSHYDS-----VVKA 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 150 -GATDSAVPCAMLLNLAQVLQEQlkplkKSKLSLMLLFFDGEEAfeewGPKDSIYGARHLAKKwhhegKLDRIDMLVLLD 228
Cdd:cd05661  92 pGANDNASGTAVTLELARVFKKV-----KTDKELRFIAFGAEEN----GLLGSKYYVASLSED-----EIKRTIGVFNLD 157
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 229 LLGAPDPAFYSFFENTeswymrIQSVETRLAKlqlleryASSGVAQRDPTRYFQSQAMRSsfiedDHIPFLRRNVP---I 305
Cdd:cd05661 158 MVGTSDAKAGDLYAYT------IDGKPNLVTD-------SGAAASKRLSGVLPLVQQGSS-----DHVPFHEAGIPaalF 219
                       250       260       270
                ....*....|....*....|....*....|....*.
gi 28574640 306 LHLIPVPFP--SVWHTPDDNASVIDYATTDNLALII 339
Cdd:cd05661 220 IHMDPETEPvePWYHTPNDTVENISKERLDNALDIV 255
M28_like cd05662
M28 Zn-Peptidases; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized ...
119-329 8.78e-10

M28 Zn-Peptidases; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins that do not contain a protease-associated (PA) domain.


Pssm-ID: 349912 [Multi-domain]  Cd Length: 268  Bit Score: 58.63  E-value: 8.78e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 119 NIIATL--NPNAERYLVLSCHYDSKYMPGVEFL-GATDSAVPCAMLLNLAQVLQEQlkplkKSKLSLMLLFFDGEEAfee 195
Cdd:cd05662  64 NVLAVIkgSEPPTKWRVVSAHYDHLGIRGGKIYnGADDNASGVAALLALAEYFKKH-----PPKHNVIFAATDAEEP--- 135
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 196 wgpkdSIYGARHLAKKWhhEGKLDRIDMLVLLDLLGAPDPAfYSFFENTE--SWYMRIQSVETRLAKLQLLERYASSGVA 273
Cdd:cd05662 136 -----GLRGSYAFVEAL--KVPRAQIELNINLDMISRPERN-ELYVEGASqfPQLTSILENVKGTCIKALHPKDTDGSIG 207
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 28574640 274 QRDPTRyfQSqamrssfiedDHIPFLRRNVPILHLiPVPFPSVWHTPDDNASVIDY 329
Cdd:cd05662 208 SIDWTR--AS----------DHYPFHKAKIPWLYF-GVEDHPDYHKPTDDFETIDQ 250
M28_like_PA cd05660
M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 ...
118-306 1.40e-07

M28 Zn-peptidase containing a protease-associated (PA) domain insert; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.


Pssm-ID: 349910 [Multi-domain]  Cd Length: 290  Bit Score: 52.36  E-value: 1.40e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 118 HNIIATLnPNAER---YLVLSCHYD-----SKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKsklSLMLLFFDG 189
Cdd:cd05660  60 HNVVAIL-PGSKLpdeYIVLSAHWDhlgigPPIGGDEIYNGAVDNASGVAAVLELARVFAAQDQRPKR---SIVFLAVTA 135
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640 190 EEAfeewgpkdSIYGARHLAKkwHHEGKLDRIDMLVLLDLLGAPDPAFYSFfenteswymRIQSVETRLAklQLLERYAS 269
Cdd:cd05660 136 EEK--------GLLGSRYYAA--NPIFPLDKIVANLNIDMIGRIGPTKDVL---------LIGSGSSELE--NILKEAAK 194
                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 28574640 270 sgvAQR---DPTRYFQsqamRSSFIEDDHIPFLRRNVPIL 306
Cdd:cd05660 195 ---AVGrvvDYDPNPE----NGSFYRSDHYNFAKKGVPVL 227
Nicastrin pfam05450
Nicastrin; Nicastrin and presenilin are two major components of the gamma-secretase complex, ...
130-333 1.91e-06

Nicastrin; Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesized in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin). A region featured in this family has a fold similar to human transferrin receptor (TfR) and a bacterial aminopeptidase. It is implicated in the pathogenesis of Alzheimer's disease.


Pssm-ID: 310213 [Multi-domain]  Cd Length: 227  Bit Score: 48.31  E-value: 1.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640   130 RYLVLSCHYDSKYM-PGVEfLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGeEAFEEWGPKDSIY----G 204
Cdd:pfam05450   1 KVVLVTARMDSTSMfDGVS-LGAMSSLSGFIVLLAAADALSKALPDISNLKRNVLFAFFNG-ESYDYIGSQRFVYdmenG 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640   205 ARHLAKKWHHEGKLDRIDMLVLLDLLG-APDPAFYSFFENTeswymRIQSVETRLakLQLLERYASSGVaqrdptryFQS 283
Cdd:pfam05450  79 KFPSDRTHTHPISPDNIDYMLEIGQVGkATSRKFYLHVDAA-----RNQSVKTQT--LDLLDRIEKSLR--------SGN 143
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28574640   284 QAMRSSFIEDDHIP------FLRRNVPILHLIPVPFPSV-----WHTPDDNASVIDYATTD 333
Cdd:pfam05450 144 FKVLPASTSNPGLPpsslqsFLRANPNFSAVVLADRPTEfenrfYHSILDDAENINSDTED 204
M28_PMSA_TfR_like cd03874
M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor ...
58-191 9.48e-04

M28 Zn-peptidase Transferrin Receptor-like family; Peptidase M28 family; Transferrin Receptor (TfR) and prostate-specific membrane antigen (PSMA, also called glutamate carboxypeptidase or GCP-II) subfamily. TfR and PSMA are homodimeric type II transmembrane proteins containing three distinct domains: protease-like, apical or protease-associated (PA) and helical domains. The protease-like domain is a large extracellular portion (ectodomain). In TfR, it contains a binding site for the transferrin molecule and has 28% identity to membrane glutamate carboxypeptidase II (mGCP-II or PSMA). The PA domain is inserted between the first and second strands of the central beta sheet in the protease-like domain. TfR1 is widely expressed, and is a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and the complex is then internalized. TfR1 may also participate in cell growth and proliferation. TfR2 binds Tf but with a significantly lower affinity than TfR1. It is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis; in humans, mutations in TfR2 are associated with a form of hemochromatosis (HFE3). PSMA is over-expressed predominantly in prostate cancer (PCa) as well as in the neovasculature of most solid tumors, but not in the vasculature of normal tissues. PSMA is considered a biomarker for PCa and possibly for use as an imaging and therapeutic target. The extracellular domain of PSMA possesses two unique enzymatic functions: N-acetylated, alpha-linked acidic dipeptidase (NAALADase) which cleaves terminal glutamate from the neurodipeptide N-acetyl-aspartyl-glutamate (NAAG), and folate hydrolase (FOLH) which cleaves the terminal glutamates from gamma-linked polyglutamates (carboxypeptidase). A mutation in this gene may be associated with impaired intestinal absorption of dietary folates, resulting in low blood folate levels and consequent hyperhomocysteinemia. Expression of this protein in the brain may be involved in a number of pathological conditions associated with glutamate excitotoxicity. This gene likely arose from a duplication event of a nearby chromosomal region. Alternative splicing gives rise to multiple transcript variants. While related in sequence to peptidase M28 GCP-II, TfR lacks the metal ion coordination centers and protease activity.


Pssm-ID: 349871 [Multi-domain]  Cd Length: 278  Bit Score: 40.36  E-value: 9.48e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28574640  58 LSDKLHLREAIDKIL-IPRVVGTTNHSIVREYIVQSLRDLDWDvEVnSFHDHAPIkgklhfHNIIATLNPN--AERYLVL 134
Cdd:cd03874   5 LVDLAKIKEDLEYLSsMPHMAGTKGDAALAKYIENSFKNNGLF-EV-ELEEYSPI------TNVVGKIEGIeqPDRAIII 76
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28574640 135 SCHYDSKYMpgveflGATDSAVPCAMLLNLAQVLQE-----QLKPLKksklSLMLLFFDGEE 191
Cdd:cd03874  77 GAHRDSWGY------GAGYPNSGTAVLLEIARLFQQlkkkfGWKPLR----TIYFISWDGSE 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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