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Conserved domains on  [gi|28893353|ref|NP_796249|]
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amphoterin-induced protein 3 precursor [Mus musculus]

Protein Classification

LRR and Ig domain-containing protein( domain architecture ID 11471382)

LRR and Ig domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
65-221 1.48e-15

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.44  E-value: 1.48e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  65 ELDLSHNALKRLhPGWLAPLSRLRALHLGYNKLEVLGhGAFTNASGLRTLDLSSNMLRmlhthDLDGLEELEklllfnNS 144
Cdd:COG4886 117 SLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLT-----DLPEELGNL------TN 183
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353 145 LMHLDL---------DAFQGLRMLSHLYLSCNELSSFSFNhlhgLG-LTRLRTLDLSSNWLKhiSIPELAALPTyLKnRL 214
Cdd:COG4886 184 LKELDLsnnqitdlpEPLGNLTNLEELDLSGNQLTDLPEP----LAnLTNLETLDLSNNQLT--DLPELGNLTN-LE-EL 255

                ....*..
gi 28893353 215 YLHNNPL 221
Cdd:COG4886 256 DLSNNQL 262
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
279-355 2.64e-05

Immunoglobulin domain; This family contains immunoglobulin-like domains.


:

Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 42.55  E-value: 2.64e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28893353   279 PGLELPEEQLHAQVGQSLRLFCN-TSVPATRVAWVspKNELLVAPASQDGSIAVLADGSLAIGRVQEQHAGVFVCLAS 355
Cdd:pfam13927   2 PVITVSPSSVTVREGETVTLTCEaTGSPPPTITWY--KNGEPISSGSTRSRSLSGSNSTLTISNVTRSDAGTYTCVAS 77
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
65-221 1.48e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.44  E-value: 1.48e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  65 ELDLSHNALKRLhPGWLAPLSRLRALHLGYNKLEVLGhGAFTNASGLRTLDLSSNMLRmlhthDLDGLEELEklllfnNS 144
Cdd:COG4886 117 SLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLT-----DLPEELGNL------TN 183
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353 145 LMHLDL---------DAFQGLRMLSHLYLSCNELSSFSFNhlhgLG-LTRLRTLDLSSNWLKhiSIPELAALPTyLKnRL 214
Cdd:COG4886 184 LKELDLsnnqitdlpEPLGNLTNLEELDLSGNQLTDLPEP----LAnLTNLETLDLSNNQLT--DLPELGNLTN-LE-EL 255

                ....*..
gi 28893353 215 YLHNNPL 221
Cdd:COG4886 256 DLSNNQL 262
LRR_8 pfam13855
Leucine rich repeat;
65-121 1.17e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.07  E-value: 1.17e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 28893353    65 ELDLSHNALKRLHPGWLAPLSRLRALHLGYNKLEVLGHGAFTNASGLRTLDLSSNML 121
Cdd:pfam13855   5 SLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
66-193 2.13e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 51.71  E-value: 2.13e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  66 LDLSHNALKRLHPgwLAPLSRLRALHLGYNKLEVLGHgaFTNASGLRTLDLSSNMLRMLHTHDLDGLEELEKLllfnNSL 145
Cdd:cd21340  51 LYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIENQRLPPGEKLTFDPRSLAALS----NSL 122
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 28893353 146 MHL--------DLDAFQGLRMLSHLYLSCNELSSFS--FNHLhgLGLTRLRTLDLSSN 193
Cdd:cd21340 123 RVLnisgnnidSLEPLAPLRNLEQLDASNNQISDLEelLDLL--SSWPSLRELDLTGN 178
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
45-231 2.59e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 47.00  E-value: 2.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353   45 LSCAGRGLQDLPVALPTTAAELDLSHNALKRLhPGWLAplSRLRALHLGYNKLEVLGHgafTNASGLRTLDLSSNMLRML 124
Cdd:PRK15370 225 LYANSNQLTSIPATLPDTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISCLPE---NLPEELRYLSVYDNSIRTL 298
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  125 HTHDLDGleeLEKLLLFNNSLMHLDLDAFQGLRML--SHLYLSCNELS--------SFSFNHLHGLGLT---RLRTLDLS 191
Cdd:PRK15370 299 PAHLPSG---ITHLNVQSNSLTALPETLPPGLKTLeaGENALTSLPASlppelqvlDVSKNQITVLPETlppTITTLDVS 375
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 28893353  192 SNWLkhISIPElaALPTYLKNRLYLHNNPLPCDCSLYHLL 231
Cdd:PRK15370 376 RNAL--TNLPE--NLPAALQIMQASRNNLVRLPESLPHFR 411
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
279-355 2.64e-05

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 42.55  E-value: 2.64e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28893353   279 PGLELPEEQLHAQVGQSLRLFCN-TSVPATRVAWVspKNELLVAPASQDGSIAVLADGSLAIGRVQEQHAGVFVCLAS 355
Cdd:pfam13927   2 PVITVSPSSVTVREGETVTLTCEaTGSPPPTITWY--KNGEPISSGSTRSRSLSGSNSTLTISNVTRSDAGTYTCVAS 77
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
286-371 6.45e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 38.64  E-value: 6.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353    286 EQLHAQVGQSLRLFCN-TSVPATRVAWVSPKNELLVAP----ASQDGSIAvladgSLAIGRVQEQHAGVFVCLASGPrlH 360
Cdd:smart00410   2 PSVTVKEGESVTLSCEaSGSPPPEVTWYKQGGKLLAESgrfsVSRSGSTS-----TLTISNVTPEDSGTYTCAATNS--S 74
                           90
                   ....*....|.
gi 28893353    361 HNQTLEYNVSV 371
Cdd:smart00410  75 GSASSGTTLTV 85
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
65-221 1.48e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.44  E-value: 1.48e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  65 ELDLSHNALKRLhPGWLAPLSRLRALHLGYNKLEVLGhGAFTNASGLRTLDLSSNMLRmlhthDLDGLEELEklllfnNS 144
Cdd:COG4886 117 SLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDLP-EPLGNLTNLKSLDLSNNQLT-----DLPEELGNL------TN 183
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353 145 LMHLDL---------DAFQGLRMLSHLYLSCNELSSFSFNhlhgLG-LTRLRTLDLSSNWLKhiSIPELAALPTyLKnRL 214
Cdd:COG4886 184 LKELDLsnnqitdlpEPLGNLTNLEELDLSGNQLTDLPEP----LAnLTNLETLDLSNNQLT--DLPELGNLTN-LE-EL 255

                ....*..
gi 28893353 215 YLHNNPL 221
Cdd:COG4886 256 DLSNNQL 262
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
44-231 1.65e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.44  E-value: 1.65e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  44 VLSCAGRGLQDLPVALPTTAA--ELDLSHNALKRLhPGWLAPLSRLRALHLGYNKLEVLGHgAFTNASGLRTLDLSSNM- 120
Cdd:COG4886 140 ELDLSNNQLTDLPEPLGNLTNlkSLDLSNNQLTDL-PEELGNLTNLKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQl 217
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353 121 ---------LRMLHTHDLDgleeleklllfNNSLmhLDLDAFQGLRMLSHLYLSCNELSSFSFNhlhgLGLTRLRTLDLS 191
Cdd:COG4886 218 tdlpeplanLTNLETLDLS-----------NNQL--TDLPELGNLTNLEELDLSNNQLTDLPPL----ANLTNLKTLDLS 280
                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 28893353 192 SNWLKHISIPELAALPTYLKNRLYLHNNPLPCDCSLYHLL 231
Cdd:COG4886 281 NNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLL 320
LRR_8 pfam13855
Leucine rich repeat;
65-121 1.17e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.07  E-value: 1.17e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 28893353    65 ELDLSHNALKRLHPGWLAPLSRLRALHLGYNKLEVLGHGAFTNASGLRTLDLSSNML 121
Cdd:pfam13855   5 SLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
85-169 2.34e-09

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 53.30  E-value: 2.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353    85 SRLRALHLGYNKLEVLGHGAFTNASGLRTLDLSSNMLRmlhthdldgleeleklllfnnslmHLDLDAFQGLRMLSHLYL 164
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLT------------------------TLSPGAFSGLPSLRYLDL 56

                  ....*
gi 28893353   165 SCNEL 169
Cdd:pfam13855  57 SGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
142-193 1.14e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.67  E-value: 1.14e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 28893353   142 NNSLMHLDLDAFQGLRMLSHLYLSCNELSSFSFNHLHglGLTRLRTLDLSSN 193
Cdd:pfam13855  10 NNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFS--GLPSLRYLDLSGN 59
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
66-193 2.13e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 51.71  E-value: 2.13e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  66 LDLSHNALKRLHPgwLAPLSRLRALHLGYNKLEVLGHgaFTNASGLRTLDLSSNMLRMLHTHDLDGLEELEKLllfnNSL 145
Cdd:cd21340  51 LYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIENQRLPPGEKLTFDPRSLAALS----NSL 122
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 28893353 146 MHL--------DLDAFQGLRMLSHLYLSCNELSSFS--FNHLhgLGLTRLRTLDLSSN 193
Cdd:cd21340 123 RVLnisgnnidSLEPLAPLRNLEQLDASNNQISDLEelLDLL--SSWPSLRELDLTGN 178
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
81-221 4.13e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 52.24  E-value: 4.13e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  81 LAPLSRLRALHLGYNKlevlghgAFTNASGLRTLDLSSNM----------LRMLHTHDLDgleeleklllfNNSLMHLDl 150
Cdd:COG4886  92 LGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQltdlpeelanLTNLKELDLS-----------NNQLTDLP- 152
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353 151 DAFQGLRMLSHLYLSCNELSSF---------------SFNHLHGL-----GLTRLRTLDLSSNWLKHISiPELAALPTyL 210
Cdd:COG4886 153 EPLGNLTNLKSLDLSNNQLTDLpeelgnltnlkeldlSNNQITDLpeplgNLTNLEELDLSGNQLTDLP-EPLANLTN-L 230
                       170
                ....*....|.
gi 28893353 211 KnRLYLHNNPL 221
Cdd:COG4886 231 E-TLDLSNNQL 240
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
45-231 2.59e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 47.00  E-value: 2.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353   45 LSCAGRGLQDLPVALPTTAAELDLSHNALKRLhPGWLAplSRLRALHLGYNKLEVLGHgafTNASGLRTLDLSSNMLRML 124
Cdd:PRK15370 225 LYANSNQLTSIPATLPDTIQEMELSINRITEL-PERLP--SALQSLDLFHNKISCLPE---NLPEELRYLSVYDNSIRTL 298
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  125 HTHDLDGleeLEKLLLFNNSLMHLDLDAFQGLRML--SHLYLSCNELS--------SFSFNHLHGLGLT---RLRTLDLS 191
Cdd:PRK15370 299 PAHLPSG---ITHLNVQSNSLTALPETLPPGLKTLeaGENALTSLPASlppelqvlDVSKNQITVLPETlppTITTLDVS 375
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 28893353  192 SNWLkhISIPElaALPTYLKNRLYLHNNPLPCDCSLYHLL 231
Cdd:PRK15370 376 RNAL--TNLPE--NLPAALQIMQASRNNLVRLPESLPHFR 411
Ig_3 pfam13927
Immunoglobulin domain; This family contains immunoglobulin-like domains.
279-355 2.64e-05

Immunoglobulin domain; This family contains immunoglobulin-like domains.


Pssm-ID: 464046 [Multi-domain]  Cd Length: 78  Bit Score: 42.55  E-value: 2.64e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28893353   279 PGLELPEEQLHAQVGQSLRLFCN-TSVPATRVAWVspKNELLVAPASQDGSIAVLADGSLAIGRVQEQHAGVFVCLAS 355
Cdd:pfam13927   2 PVITVSPSSVTVREGETVTLTCEaTGSPPPTITWY--KNGEPISSGSTRSRSLSGSNSTLTISNVTRSDAGTYTCVAS 77
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
286-371 6.45e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 38.64  E-value: 6.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353    286 EQLHAQVGQSLRLFCN-TSVPATRVAWVSPKNELLVAP----ASQDGSIAvladgSLAIGRVQEQHAGVFVCLASGPrlH 360
Cdd:smart00410   2 PSVTVKEGESVTLSCEaSGSPPPEVTWYKQGGKLLAESgrfsVSRSGSTS-----TLTISNVTPEDSGTYTCAATNS--S 74
                           90
                   ....*....|.
gi 28893353    361 HNQTLEYNVSV 371
Cdd:smart00410  75 GSASSGTTLTV 85
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
49-221 4.81e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 39.26  E-value: 4.81e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  49 GRGLQDLPVALPTTAA--ELDLSHNALKRLHPGWLAPLSR---LRALHLGYNKLE-----VLGHGAFTNASGLRTLDLSS 118
Cdd:cd00116  67 PRGLQSLLQGLTKGCGlqELDLSDNALGPDGCGVLESLLRsssLQELKLNNNGLGdrglrLLAKGLKDLPPALEKLVLGR 146
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353 119 NMLrmlhthdldgleeleklllfNNSLMHLDLDAFQGLRMLSHLYLSCNELSSFSFNHL-HGL-GLTRLRTLDLSSNWLK 196
Cdd:cd00116 147 NRL--------------------EGASCEALAKALRANRDLKELNLANNGIGDAGIRALaEGLkANCNLEVLDLNNNGLT 206
                       170       180
                ....*....|....*....|....*..
gi 28893353 197 HISIPELAALPTYLKN--RLYLHNNPL 221
Cdd:cd00116 207 DEGASALAETLASLKSleVLNLGDNNL 233
LRR_8 pfam13855
Leucine rich repeat;
159-221 9.12e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.81  E-value: 9.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28893353   159 LSHLYLSCNELSSF---SFNHLHGLgltrlRTLDLSSNWLKHISIPELAALP--TYlknrLYLHNNPL 221
Cdd:pfam13855   3 LRSLDLSNNRLTSLddgAFKGLSNL-----KVLDLSNNLLTTLSPGAFSGLPslRY----LDLSGNRL 61
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
61-193 9.74e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 38.11  E-value: 9.74e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28893353  61 TTAAELDLSHNALKRLHPGWLA-----PLSRLRALHLGYNKLEVLG----HGAFTNASGLRTLDLSSNMLRMlhthdlDG 131
Cdd:cd00116 108 SSLQELKLNNNGLGDRGLRLLAkglkdLPPALEKLVLGRNRLEGAScealAKALRANRDLKELNLANNGIGD------AG 181
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 28893353 132 LEELEKLLLFNNSLMHLDLD--------------AFQGLRMLSHLYLSCNELSSFSFNHLH---GLGLTRLRTLDLSSN 193
Cdd:cd00116 182 IRALAEGLKANCNLEVLDLNnngltdegasalaeTLASLKSLEVLNLGDNNLTDAGAAALAsalLSPNISLLTLSLSCN 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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