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Conserved domains on  [gi|30409972|ref|NP_848485|]
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WD repeat domain phosphoinositide-interacting protein 2 isoform 1 [Mus musculus]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 11455410)

WD40 repeat domain-containing protein similar to proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
PubMed:  10322433|8090199
SCOP:  4002744

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
118-342 4.26e-12

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 67.63  E-value: 4.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 118 SLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypgSASI-GEVQVFDTINLRAANMIPAHDSPLAALAFDASG 196
Cdd:COG2319 143 TVRLWDLATGKLLRTLTG---HSGAVTSVAFSPDGKLLA---SGSDdGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDG 216

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 197 TKLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFSMDGMFLSASSNTETVHIFKLEavrekPPEEPTTWTGY 276
Cdd:COG2319 217 KLLASGSADGTV-RLWDLATGKLLRTLTGHSG---SVRSVAFSPDGRLLASGSADGTVRLWDLA-----TGELLRTLTGH 287

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 277 FGKVLmaSTSYLPSqvtemfnqGRAFA------TVRL----------PFCGHKN-ICSLTTIQKIPRLLVGASDGYLYMY 339
Cdd:COG2319 288 SGGVN--SVAFSPD--------GKLLAsgsddgTVRLwdlatgkllrTLTGHTGaVRSVAFSPDGKTLASGSDDGTVRLW 357


                ...
gi 30409972 340 NLD 342
Cdd:COG2319 358 DLA 360
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
118-342 4.26e-12

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 67.63  E-value: 4.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 118 SLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypgSASI-GEVQVFDTINLRAANMIPAHDSPLAALAFDASG 196
Cdd:COG2319 143 TVRLWDLATGKLLRTLTG---HSGAVTSVAFSPDGKLLA---SGSDdGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDG 216

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 197 TKLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFSMDGMFLSASSNTETVHIFKLEavrekPPEEPTTWTGY 276
Cdd:COG2319 217 KLLASGSADGTV-RLWDLATGKLLRTLTGHSG---SVRSVAFSPDGRLLASGSADGTVRLWDLA-----TGELLRTLTGH 287

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 277 FGKVLmaSTSYLPSqvtemfnqGRAFA------TVRL----------PFCGHKN-ICSLTTIQKIPRLLVGASDGYLYMY 339
Cdd:COG2319 288 SGGVN--SVAFSPD--------GKLLAsgsddgTVRLwdlatgkllrTLTGHTGaVRSVAFSPDGKTLASGSDDGTVRLW 357


                ...
gi 30409972 340 NLD 342
Cdd:COG2319 358 DLA 360
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 13-265 1.03e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 1.03e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972  13 GQLLFANFNQDNTSLAVGSKSGykffSLSSVDKLEQIYECTDTE-DVCIVERLFSSSLVAIVSLKAPRKLKVchFKKGTE 91
Cdd:cd00200  10 GGVTCVAFSPDGKLLATGSGDG----TIKVWDLETGELLRTLKGhTGPVRDVAASADGTYLASGSSDKTIRL--WDLETG 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972  92 ICNYSY---SNTILAVKLNRQRLIVC---LEESLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypGSASIGE 165
Cdd:cd00200  84 ECVRTLtghTSYVSSVAFSPDGRILSsssRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVA--SSSQDGT 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 166 VQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTvIRVFSIPEGQKLFEFRRgvkRCVSICSLAFSMDGMFL 245
Cdd:cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLL 234

                       250       260
                ....*....|....*....|
gi 30409972 246 SASSNTETVHIFKLEAVREK 265
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECV 254
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
118-342 4.26e-12

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 67.63  E-value: 4.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 118 SLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypgSASI-GEVQVFDTINLRAANMIPAHDSPLAALAFDASG 196
Cdd:COG2319 143 TVRLWDLATGKLLRTLTG---HSGAVTSVAFSPDGKLLA---SGSDdGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDG 216

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 197 TKLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFSMDGMFLSASSNTETVHIFKLEavrekPPEEPTTWTGY 276
Cdd:COG2319 217 KLLASGSADGTV-RLWDLATGKLLRTLTGHSG---SVRSVAFSPDGRLLASGSADGTVRLWDLA-----TGELLRTLTGH 287

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 277 FGKVLmaSTSYLPSqvtemfnqGRAFA------TVRL----------PFCGHKN-ICSLTTIQKIPRLLVGASDGYLYMY 339
Cdd:COG2319 288 SGGVN--SVAFSPD--------GKLLAsgsddgTVRLwdlatgkllrTLTGHTGaVRSVAFSPDGKTLASGSDDGTVRLW 357


                ...
gi 30409972 340 NLD 342
Cdd:COG2319 358 DLA 360
WD40 COG2319
WD40 repeat [General function prediction only];
121-280 2.27e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 65.32  E-value: 2.27e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 121 IHNIRDMKVLHTIRetpPNPAGLCALSINNDNCYLAypgSASI-GEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKL 199
Cdd:COG2319 230 LWDLATGKLLRTLT---GHSGSVRSVAFSPDGRLLA---SGSAdGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLL 303

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 200 ATASEKGTViRVFSIPEGQKLFEFRRGVKRcvsICSLAFSMDGMFLSASSNTETVHIFKLEAvrekpPEEPTTWTGYFGK 279
Cdd:COG2319 304 ASGSDDGTV-RLWDLATGKLLRTLTGHTGA---VRSVAFSPDGKTLASGSDDGTVRLWDLAT-----GELLRTLTGHTGA 374


                .
gi 30409972 280 V 280
Cdd:COG2319 375 V 375
WD40 COG2319
WD40 repeat [General function prediction only];
118-260 5.84e-10

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 60.70  E-value: 5.84e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 118 SLYIHNIRDMKVLHTIRetpPNPAGLCALSINNDNCYLAypgSASI-GEVQVFDTINLRAANMIPAHDSPLAALAFDASG 196
Cdd:COG2319 269 TVRLWDLATGELLRTLT---GHSGGVNSVAFSPDGKLLA---SGSDdGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDG 342

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30409972 197 TKLATASEKGTViRVFSIPEGQKLFEFRRGVKRcvsICSLAFSMDGMFLSASSNTETVHIFKLE 260
Cdd:COG2319 343 KTLASGSDDGTV-RLWDLATGELLRTLTGHTGA---VTSVAFSPDGRTLASGSADGTVRLWDLA 402
WD40 COG2319
WD40 repeat [General function prediction only];
161-280 6.78e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 57.61  E-value: 6.78e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 161 ASIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTViRVFSIPEGQKLFEFrRGVKRCVSicSLAFSM 240
Cdd:COG2319  97 SADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTV-RLWDLATGKLLRTL-TGHSGAVT--SVAFSP 172

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 30409972 241 DGMFLSASSNTETVHIFKLEAvrekpPEEPTTWTGYFGKV 280
Cdd:COG2319 173 DGKLLASGSDDGTVRLWDLAT-----GKLLRTLTGHTGAV 207
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 13-265 1.03e-07

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 53.11  E-value: 1.03e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972  13 GQLLFANFNQDNTSLAVGSKSGykffSLSSVDKLEQIYECTDTE-DVCIVERLFSSSLVAIVSLKAPRKLKVchFKKGTE 91
Cdd:cd00200  10 GGVTCVAFSPDGKLLATGSGDG----TIKVWDLETGELLRTLKGhTGPVRDVAASADGTYLASGSSDKTIRL--WDLETG 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972  92 ICNYSY---SNTILAVKLNRQRLIVC---LEESLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypGSASIGE 165
Cdd:cd00200  84 ECVRTLtghTSYVSSVAFSPDGRILSsssRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVA--SSSQDGT 158

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 166 VQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTvIRVFSIPEGQKLFEFRRgvkRCVSICSLAFSMDGMFL 245
Cdd:cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLL 234

                       250       260
                ....*....|....*....|
gi 30409972 246 SASSNTETVHIFKLEAVREK 265
Cdd:cd00200 235 ASGSEDGTIRVWDLRTGECV 254
WD40 COG2319
WD40 repeat [General function prediction only];
160-280 9.39e-06

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 47.60  E-value: 9.39e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 160 SASIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTViRVFSIPEGQKLFEFRRGVKrcvSICSLAFS 239
Cdd:COG2319  54 GAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTV-RLWDLATGLLLRTLTGHTG---AVRSVAFS 129

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 30409972 240 MDGMFLSASSNTETVHIFKLEAvrekpPEEPTTWTGYFGKV 280
Cdd:COG2319 130 PDGKTLASGSADGTVRLWDLAT-----GKLLRTLTGHSGAV 165
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 180-342 2.17e-05

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 46.17  E-value: 2.17e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 180 IPAHDSPLAALAFDASGTKLATASEKGTvIRVFSIPEGQKLFEFR---RGVKRCVSICslafsmDGMFLSASSNTETVHI 256
Cdd:cd00200   5 LKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLRTLKghtGPVRDVAASA------DGTYLASGSSDKTIRL 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 257 FKLEAvrekpPEEPTTWTGYFGKVL---------MASTSYLPSQV----TEMFNQGRAFAtvrlpfcGHKNICSLTTIQK 323
Cdd:cd00200  78 WDLET-----GECVRTLTGHTSYVSsvafspdgrILSSSSRDKTIkvwdVETGKCLTTLR-------GHTDWVNSVAFSP 145

                       170       180
                ....*....|....*....|
gi 30409972 324 IPRLLVGAS-DGYLYMYNLD 342
Cdd:cd00200 146 DGTFVASSSqDGTIKLWDLR 165
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 98-213 1.09e-04

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 43.86  E-value: 1.09e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972  98 SNTILAVKL--NRQRLIVC-LEESLYIHNIRDMKVLHTIREtppNPAGLCALSINNDNCYLAypGSASIGEVQVFDTINL 174
Cdd:cd00200 177 TGEVNSVAFspDGEKLLSSsSDGTIKLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLA--SGSEDGTIRVWDLRTG 251

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 30409972 175 RAANMIPAHDSPLAALAFDASGTKLATASEKGTvIRVFS 213
Cdd:cd00200 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT-IRIWD 289
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
102-217 1.18e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 43.53  E-value: 1.18e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 102 LAVKLNRQRLIVCLEES--LYIHNIRDMKVLHTIrETPPNPAGLcALSINNDNCYLAYPGSASIGE-VQVFDTINLRAAN 178
Cdd:COG3391 115 LAVDPDGGRLYVADSGNgrVSVIDTATGKVVATI-PVGAGPHGI-AVDPDGKRLYVANSGSNTVSViVSVIDTATGKVVA 192

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 30409972 179 MIPAHDSPLaALAFDASGTKL-------ATASEKGTVIRVFSIPEG 217
Cdd:COG3391 193 TIPVGGGPV-GVAVSPDGRRLyvanrgsNTSNGGSNTVSVIDLATL 237
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
164-257 5.64e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 41.22  E-value: 5.64e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409972 164 GEVQVFDTINLRAANMIPAHDSPlAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGvkrcVSICSLAFSMDGM 243
Cdd:COG3391  90 GRVSVIDLATGKVVATIPVGGGP-RGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVG----AGPHGIAVDPDGK 164

                        90
                ....*....|....*
gi 30409972 244 FL-SASSNTETVHIF 257
Cdd:COG3391 165 RLyVANSGSNTVSVI 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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