NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|30684370|ref|NP_849671|]
View 

WD repeat protein [Arabidopsis thaliana]

Protein Classification

Utp12 domain-containing protein( domain architecture ID 10512682)

Utp12 domain-containing protein similar to Schizosaccharomyces pombe uncharacterized protein C1450.03; lacks the WD repeats found at the N-terminus of other UTP5 family members such as Saccharomyces cerevisiae DIP2/UTP12

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 116-218 7.55e-16

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


:

Pssm-ID: 461125  Cd Length: 106  Bit Score: 71.43  E-value: 7.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684370   116 DDRSLLLDCLYNRDEQVIANSVAKLNSAEVLKLLNALLPILQSRGAILACTIPWIKSLLLTHSSGIMSQESSLLALNTMY 195
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|....
gi 30684370   196 QLIESRVSTIHTAVEVSSG-LDLI 218
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLGaLDYL 104
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 116-218 7.55e-16

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 71.43  E-value: 7.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684370   116 DDRSLLLDCLYNRDEQVIANSVAKLNSAEVLKLLNALLPILQSRGAILACTIPWIKSLLLTHSSGIMSQESSLLALNTMY 195
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|....
gi 30684370   196 QLIESRVSTIHTAVEVSSG-LDLI 218
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLGaLDYL 104
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 116-218 7.55e-16

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 71.43  E-value: 7.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30684370   116 DDRSLLLDCLYNRDEQVIANSVAKLNSAEVLKLLNALLPILQSRGAILACTIPWIKSLLLTHSSGIMSQESSLLALNTMY 195
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYVLRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVSNPDLRPVLRSLQ 80

                          90       100
                  ....*....|....*....|....
gi 30684370   196 QLIESRVSTIHTAVEVSSG-LDLI 218
Cdd:pfam04003  81 KLLRRRLKELKDLLGLNLGaLDYL 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH