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Conserved domains on  [gi|30699022|ref|NP_849884|]
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Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

Protein Classification

F-box/kelch-repeat protein( domain architecture ID 20253241)

F-box/kelch-repeat protein may be a component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins

CATH:  1.20.1280.50|2.120.10.80
Gene Ontology:  GO:0006511|GO:0019005|GO:0005515|GO:0016567
PubMed:  31898225|11178263|10603472|31442578|24959344|10581972
SCOP:  4001927|3000448

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
158-407 3.03e-21

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 93.30  E-value: 3.03e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 158 WEAYDPNGDRWLRVPKMTFNEC--FMcsdkeSLAVGTELLVFG-------KEIMSHVIYRYSILTNTWTSGMQMNVPRCL 228
Cdd:COG3055  40 FEVYDPATNTWSELAPLPGPPRhhAA-----AVAQDGKLYVFGgftganpSSTPLNDVYVYDPATNTWTKLAPMPTPRGG 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 229 FGSASLGEIAVIAGGCDPRGRiLSSAELYNSETGEWTVIPSMNKARKMCSSVFM-DGNFYCIGGIGEGNSkmllcgevyd 307
Cdd:COG3055 115 ATALLLDGKIYVVGGWDDGGN-VAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLpDGKILVIGGRNGSGF---------- 183

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 308 lkKKTWTLIPNMLPERSSGGggdqakeiaaataaseapplVAVVKDELYAA---NYAQQEVKKYDKRLNVWNKVGNLPEr 384
Cdd:COG3055 184 --SNTWTTLAPLPTARAGHA--------------------AAVLGGKILVFggeSGFSDEVEAYDPATNTWTALGELPT- 240

                       250       260
                ....*....|....*....|...
gi 30699022 385 assmNGWGMAFRACGDQLVVVGG 407
Cdd:COG3055 241 ----PRHGHAAVLTDGKVYVIGG 259
F-box_SF super family cl45894
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ...
 105-139 2.91e-04

F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.


The actual alignment was detected with superfamily member cd22152:

Pssm-ID: 459239  Cd Length: 45  Bit Score: 38.32  E-value: 2.91e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 30699022 105 LNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLR 139
Cdd:cd22152  11 LQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
158-407 3.03e-21

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 93.30  E-value: 3.03e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 158 WEAYDPNGDRWLRVPKMTFNEC--FMcsdkeSLAVGTELLVFG-------KEIMSHVIYRYSILTNTWTSGMQMNVPRCL 228
Cdd:COG3055  40 FEVYDPATNTWSELAPLPGPPRhhAA-----AVAQDGKLYVFGgftganpSSTPLNDVYVYDPATNTWTKLAPMPTPRGG 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 229 FGSASLGEIAVIAGGCDPRGRiLSSAELYNSETGEWTVIPSMNKARKMCSSVFM-DGNFYCIGGIGEGNSkmllcgevyd 307
Cdd:COG3055 115 ATALLLDGKIYVVGGWDDGGN-VAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLpDGKILVIGGRNGSGF---------- 183

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 308 lkKKTWTLIPNMLPERSSGGggdqakeiaaataaseapplVAVVKDELYAA---NYAQQEVKKYDKRLNVWNKVGNLPEr 384
Cdd:COG3055 184 --SNTWTTLAPLPTARAGHA--------------------AAVLGGKILVFggeSGFSDEVEAYDPATNTWTALGELPT- 240

                       250       260
                ....*....|....*....|...
gi 30699022 385 assmNGWGMAFRACGDQLVVVGG 407
Cdd:COG3055 241 ----PRHGHAAVLTDGKVYVIGG 259
PHA03098 PHA03098
kelch-like protein; Provisional
 226-407 5.53e-12

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 67.49  E-value: 5.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  226 RCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDGNFYCIGGIGEGNSkmLLCGEV 305
Cdd:PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSIS--LNTVES 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  306 YDLKKKTWTLIPNMLPERSSGGggdqakeiaaataaseapplVAVVKDELYAA------NYAQQEVKKYDKRLNVWNKVG 379
Cdd:PHA03098 363 WKPGESKWREEPPLIFPRYNPC--------------------VVNVNNLIYVIggisknDELLKTVECFSLNTNKWSKGS 422

                        170       180
                 ....*....|....*....|....*...
gi 30699022  380 NLPeraSSMNGWGMAFRacGDQLVVVGG 407
Cdd:PHA03098 423 PLP---ISHYGGCAIYH--DGKIYVIGG 445
Kelch smart00612
Kelch domain;
240-284 5.89e-08

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 48.71  E-value: 5.89e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 30699022    240 IAGGCDPrGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDG 284
Cdd:smart00612   4 VVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 225-271 6.61e-08

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 48.76  E-value: 6.61e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 30699022   225 PRCLFGSASLGEIAVIAGGCDpRGRILSSAELYNSETGEWTVIPSMN 271
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFD-GNQSLNSVEVYDPETNTWSKLPSMP 46
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 105-139 2.91e-04

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 38.32  E-value: 2.91e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 30699022 105 LNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLR 139
Cdd:cd22152  11 LQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
158-407 3.03e-21

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 93.30  E-value: 3.03e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 158 WEAYDPNGDRWLRVPKMTFNEC--FMcsdkeSLAVGTELLVFG-------KEIMSHVIYRYSILTNTWTSGMQMNVPRCL 228
Cdd:COG3055  40 FEVYDPATNTWSELAPLPGPPRhhAA-----AVAQDGKLYVFGgftganpSSTPLNDVYVYDPATNTWTKLAPMPTPRGG 114

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 229 FGSASLGEIAVIAGGCDPRGRiLSSAELYNSETGEWTVIPSMNKARKMCSSVFM-DGNFYCIGGIGEGNSkmllcgevyd 307
Cdd:COG3055 115 ATALLLDGKIYVVGGWDDGGN-VAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLpDGKILVIGGRNGSGF---------- 183

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 308 lkKKTWTLIPNMLPERSSGGggdqakeiaaataaseapplVAVVKDELYAA---NYAQQEVKKYDKRLNVWNKVGNLPEr 384
Cdd:COG3055 184 --SNTWTTLAPLPTARAGHA--------------------AAVLGGKILVFggeSGFSDEVEAYDPATNTWTALGELPT- 240

                       250       260
                ....*....|....*....|...
gi 30699022 385 assmNGWGMAFRACGDQLVVVGG 407
Cdd:COG3055 241 ----PRHGHAAVLTDGKVYVIGG 259
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
215-407 1.95e-17

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 82.13  E-value: 1.95e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 215 TWTSGMQMNVPRCLFGSASLGEIAVIAGGCDPrGRILSSAELYNSETGEWTVIPSMNKARKMCS-SVFMDGNFYCIGGIG 293
Cdd:COG3055   2 TWSSLPDLPTPRSEAAAALLDGKVYVAGGLSG-GSASNSFEVYDPATNTWSELAPLPGPPRHHAaAVAQDGKLYVFGGFT 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 294 EGNSKMLLC--GEVYDLKKKTWTLIPNMLPERSSGGggdqakeiaaataaseapplVAVVKDELYAA-----NYAQQEVK 366
Cdd:COG3055  81 GANPSSTPLndVYVYDPATNTWTKLAPMPTPRGGAT--------------------ALLLDGKIYVVggwddGGNVAWVE 140

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 30699022 367 KYDKRLNVWNKVGNLPERASSMngwgMAFRACGDQLVVVGG 407
Cdd:COG3055 141 VYDPATGTWTQLAPLPTPRDHL----AAAVLPDGKILVIGG 177
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
159-307 4.02e-15

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 75.19  E-value: 4.02e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022 159 EAYDPNGDRWLRVPKMTFNECFMCSdkeSLAVGTELLVFGKeimshviYRYSILTNTWTSGMQMNVPRCLFGSASLGEIA 238
Cdd:COG3055 140 EVYDPATGTWTQLAPLPTPRDHLAA---AVLPDGKILVIGG-------RNGSGFSNTWTTLAPLPTARAGHAAAVLGGKI 209

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30699022 239 VIAGGcdpRGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDGNFYCIGGIGEGN--SKMLLCGEVYD 307
Cdd:COG3055 210 LVFGG---ESGFSDEVEAYDPATNTWTALGELPTPRHGHAAVLTDGKVYVIGGETKPGvrTPLVTSAEVYD 277
PHA03098 PHA03098
kelch-like protein; Provisional
 226-407 5.53e-12

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 67.49  E-value: 5.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  226 RCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDGNFYCIGGIGEGNSkmLLCGEV 305
Cdd:PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSIS--LNTVES 362

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  306 YDLKKKTWTLIPNMLPERSSGGggdqakeiaaataaseapplVAVVKDELYAA------NYAQQEVKKYDKRLNVWNKVG 379
Cdd:PHA03098 363 WKPGESKWREEPPLIFPRYNPC--------------------VVNVNNLIYVIggisknDELLKTVECFSLNTNKWSKGS 422

                        170       180
                 ....*....|....*....|....*...
gi 30699022  380 NLPeraSSMNGWGMAFRacGDQLVVVGG 407
Cdd:PHA03098 423 PLP---ISHYGGCAIYH--DGKIYVIGG 445
PHA03098 PHA03098
kelch-like protein; Provisional
 149-321 3.64e-09

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 58.63  E-value: 3.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  149 IYFSCRLLEWEAYDPNGDRWLRVPKMTFNECFMCSDKeslaVGTELLVFGKEIMSH----VIYRYSILTNTWTSGMQMNV 224
Cdd:PHA03098 351 IYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN----VNNLIYVIGGISKNDellkTVECFSLNTNKWSKGSPLPI 426

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  225 PRCLFGSASLGEIAVIAGGCDPRGRI--LSSAELYNSETGEWTVIPSMNKARKMCSSVFMDGNFYCIGGIGEGNSKMLLc 302
Cdd:PHA03098 427 SHYGGCAIYHDGKIYVIGGISYIDNIkvYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEI- 505

                        170
                 ....*....|....*....
gi 30699022  303 gEVYDLKKKTWTLIPNMLP 321
Cdd:PHA03098 506 -EVYDDKTNTWTLFCKFPK 523
Kelch smart00612
Kelch domain;
240-284 5.89e-08

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 48.71  E-value: 5.89e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 30699022    240 IAGGCDPrGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDG 284
Cdd:smart00612   4 VVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 225-271 6.61e-08

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 48.76  E-value: 6.61e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 30699022   225 PRCLFGSASLGEIAVIAGGCDpRGRILSSAELYNSETGEWTVIPSMN 271
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFD-GNQSLNSVEVYDPETNTWSKLPSMP 46
PHA03098 PHA03098
kelch-like protein; Provisional
 160-382 1.23e-06

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 50.54  E-value: 1.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  160 AYDPNGDRWLRVPKMTFN--ECFMCSDKESL-AVGTEllvfGKEIMSHVIYRYSILTNTWTSGMQMNVPRCLFGSASLGE 236
Cdd:PHA03098 315 SYDTKTKSWNKVPELIYPrkNPGVTVFNNRIyVIGGI----YNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN 390

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30699022  237 IAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDGNFYCIGGIG-EGNSKMLLCGEVYDLKKKTWTL 315
Cdd:PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISyIDNIKVYNIVESYNPVTNKWTE 470

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30699022  316 IPNMLPERSSggggdqakeiaaataaseapPLVAVVKDELYA-----ANYAQQEVKKYDKRLNVWNKVGNLP 382
Cdd:PHA03098 471 LSSLNFPRIN--------------------ASLCIFNNKIYVvggdkYEYYINEIEVYDDKTNTWTLFCKFP 522
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 273-319 1.41e-06

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 44.91  E-value: 1.41e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 30699022   273 ARKMCSSVFMDGNFYCIGGIGEGNSkmLLCGEVYDLKKKTWTLIPNM 319
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQS--LNSVEVYDPETNTWSKLPSM 45
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 105-139 2.91e-04

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 38.32  E-value: 2.91e-04
                        10        20        30
                ....*....|....*....|....*....|....*
gi 30699022 105 LNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLR 139
Cdd:cd22152  11 LQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
Kelch_4 pfam13418
Galactose oxidase, central domain;
225-270 3.11e-04

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 38.36  E-value: 3.11e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 30699022   225 PRCLFGSASLGE-IAVIAGGCDPRGRILSSAELYNSETGEWTVIPSM 270
Cdd:pfam13418   1 PRAYHTSTSIPDdTIYLFGGEGEDGTLLSDLWVFDLSTNEWTRLGSL 47
Kelch_6 pfam13964
Kelch motif;
225-274 3.35e-04

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 38.47  E-value: 3.35e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 30699022   225 PRCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKAR 274
Cdd:pfam13964   1 PRTFHSVVSVGGYIYVFGGYTNASPALNKLEVYNPLTKSWEELPPLPTPR 50
Kelch_6 pfam13964
Kelch motif;
273-319 3.46e-03

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 35.39  E-value: 3.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 30699022   273 ARKMCSSVFMDGNFYCIGGIGEGNSKmLLCGEVYDLKKKTWTLIPNM 319
Cdd:pfam13964   1 PRTFHSVVSVGGYIYVFGGYTNASPA-LNKLEVYNPLTKSWEELPPL 46
Kelch_3 pfam13415
Galactose oxidase, central domain;
235-280 6.43e-03

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 34.57  E-value: 6.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 30699022   235 GEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARkMCSSV 280
Cdd:pfam13415   2 DKLYIFGGLGFDGQTRLNDLYVYDLDTNTWTQIGDLPPPR-SGHSA 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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