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Conserved domains on  [gi|30693980|ref|NP_850701|]
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FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 10370983)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755
SCOP:  4001062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
201-290 1.04e-18

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 81.09  E-value: 1.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980   201 DSRLSVHYKGMLLNeeKTVFYDSKidNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-PPGVSE 279
Cdd:pfam00254   8 GDRVTVHYTGTLED--GTVFDSSY--DRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 30693980   280 GAHVQWEIELL 290
Cdd:pfam00254  84 NATLVFEVELL 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
317-495 2.59e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 2.59e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE----LDPDDAE-----------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARKQFKGLFDKRPGEITEVGSEIREES 474
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRyEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                       170       180
                ....*....|....*....|.
gi 30693980 475 KTIEEVDETKDNDDDETLEEE 495
Cdd:COG0457 194 EVLLALLLALEQALRKKLAIL 214
FKBP_C super family cl19519
FKBP-type peptidyl-prolyl cis-trans isomerase;
1-54 1.02e-08

FKBP-type peptidyl-prolyl cis-trans isomerase;


The actual alignment was detected with superfamily member pfam00254:

Pssm-ID: 473184  Cd Length: 94  Bit Score: 52.58  E-value: 1.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30693980     1 MILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDCpvsAPENFPKDDELHFEIELL 54
Cdd:pfam00254  44 VIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL---AGPVIPPNATLVFEVELL 94
FKBP_C super family cl19519
FKBP-type peptidyl-prolyl cis-trans isomerase;
78-167 1.52e-04

FKBP-type peptidyl-prolyl cis-trans isomerase;


The actual alignment was detected with superfamily member pfam00254:

Pssm-ID: 473184  Cd Length: 94  Bit Score: 40.64  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980    78 GWESPREPYEVKARISAKSGDGHVIFS--HTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRkqylteSPLLHIDQ 155
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSsyDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIP------PELAYGEE 74

                          90       100
                  ....*....|....*....|
gi 30693980   156 DLEE--------VHFEVELV 167
Cdd:pfam00254  75 GLAGpvippnatLVFEVELL 94
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
201-290 1.04e-18

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 81.09  E-value: 1.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980   201 DSRLSVHYKGMLLNeeKTVFYDSKidNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-PPGVSE 279
Cdd:pfam00254   8 GDRVTVHYTGTLED--GTVFDSSY--DRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 30693980   280 GAHVQWEIELL 290
Cdd:pfam00254  84 NATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 186-292 1.54e-12

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 63.66  E-value: 1.54e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 186 IRDGRGEFPMDcplqDSRLSVHYKGMLLNeeKTVFyDSKIDNNdQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPD 265
Cdd:COG0545   6 LKEGTGAKPKA----GDTVTVHYTGTLLD--GTVF-DSSYDRG-EPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPE 77

                        90       100
                ....*....|....*....|....*..
gi 30693980 266 YAYDKFPRPPGVSEGAHVQWEIELLGF 292
Cdd:COG0545  78 LAYGERGAGGVIPPNSTLVFEVELLDV 104
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
317-495 2.59e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 2.59e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE----LDPDDAE-----------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARKQFKGLFDKRPGEITEVGSEIREES 474
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRyEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                       170       180
                ....*....|....*....|.
gi 30693980 475 KTIEEVDETKDNDDDETLEEE 495
Cdd:COG0457 194 EVLLALLLALEQALRKKLAIL 214
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 310-468 1.10e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.15  E-value: 1.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980   310 ADKIRSTGNRLFKEGKFELAKAKYEKVLRefnhvnpQDEDEgkifgdtrnMLHLNVAACLLKMGEWRKSIETCNKVLEAK 389
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIE-------CKPDP---------VYYSNRAACHNALGDWEKVVEDTTAALELD 190

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30693980   390 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKeqEAESKARKQFKGLFDKRPgEITEVGS 468
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK--FAESKAKEILETKPENLP-SVTFVGN 266
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
1-54 1.02e-08

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 52.58  E-value: 1.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30693980     1 MILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDCpvsAPENFPKDDELHFEIELL 54
Cdd:pfam00254  44 VIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL---AGPVIPPNATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
78-167 1.52e-04

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 40.64  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980    78 GWESPREPYEVKARISAKSGDGHVIFS--HTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRkqylteSPLLHIDQ 155
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSsyDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIP------PELAYGEE 74

                          90       100
                  ....*....|....*....|
gi 30693980   156 DLEE--------VHFEVELV 167
Cdd:pfam00254  75 GLAGpvippnatLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 1-56 3.95e-04

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 39.78  E-value: 3.95e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 30693980   1 MILGLLEGIPTMHKGEIAMFKMKPEMHYAEIdcpvSAPENFPKDDELHFEIELLDF 56
Cdd:COG0545  53 VIPGWDEGLQGMKVGGKRRLVIPPELAYGER----GAGGVIPPNSTLVFEVELLDV 104
TPR_1 pfam00515
Tetratricopeptide repeat;
393-423 8.58e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 8.58e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 30693980   393 VKGLYRRGMAYIAGGEYDDARNDFNMMIKVD 423
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
201-290 1.04e-18

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 81.09  E-value: 1.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980   201 DSRLSVHYKGMLLNeeKTVFYDSKidNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-PPGVSE 279
Cdd:pfam00254   8 GDRVTVHYTGTLED--GTVFDSSY--DRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 30693980   280 GAHVQWEIELL 290
Cdd:pfam00254  84 NATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 186-292 1.54e-12

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 63.66  E-value: 1.54e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 186 IRDGRGEFPMDcplqDSRLSVHYKGMLLNeeKTVFyDSKIDNNdQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPD 265
Cdd:COG0545   6 LKEGTGAKPKA----GDTVTVHYTGTLLD--GTVF-DSSYDRG-EPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPE 77

                        90       100
                ....*....|....*....|....*..
gi 30693980 266 YAYDKFPRPPGVSEGAHVQWEIELLGF 292
Cdd:COG0545  78 LAYGERGAGGVIPPNSTLVFEVELLDV 104
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
317-495 2.59e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 2.59e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE----LDPDDAE-----------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARKQFKGLFDKRPGEITEVGSEIREES 474
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRyEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                       170       180
                ....*....|....*....|.
gi 30693980 475 KTIEEVDETKDNDDDETLEEE 495
Cdd:COG0457 194 EVLLALLLALEQALRKKLAIL 214
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
307-453 1.09e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.55  E-value: 1.09e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 307 MDEADKIRSTGNRLFKEGKFELAKAKYEKVLREfnhvNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVL 386
Cdd:COG4785  70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALEL----DPDLAE-----------AYNNRGLAYLLLGDYDAALEDFDRAL 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 387 EAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKS------------SEADATAALLKLKQKEQEAE------SKA 448
Cdd:COG4785 135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylaeRKLDPEKALALLLEDWATAYllqgdtEEA 214


                ....*
gi 30693980 449 RKQFK 453
Cdd:COG4785 215 RELFK 219
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
308-442 3.61e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 3.61e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 308 DEADKIRSTGNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLE 387
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE----LDPDDAE-----------ALYNLGLAYLRLGRYEEALADYEQALE 70

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30693980 388 AKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSseaDATA------ALLKLKQKEQ 442
Cdd:COG0457  71 LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD---DAEAlynlglALLELGRYDE 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 317-436 5.54e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 5.54e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALR----LDPDNAD-----------ALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVDkssEADATAALLK 436
Cdd:COG4235  89 YLLGLAAFQQGDYAEAIAAWQKLLALL---PADAPARLLE 125
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 317-462 1.32e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.05  E-value: 1.32e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG2956  15 GLNYLLNGQPDKAIDLLEEALE----LDPETVE-----------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVDKSSEaDATAALLKLKQKEQEAEsKARKQFKGLFDKRPGE 462
Cdd:COG2956  80 LELAQDYLKAGLLDRAEELLEKLLELDPDDA-EALRLLAEIYEQEGDWE-KAIEVLERLLKLGPEN 143
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 321-460 5.89e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 5.89e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 321 FKEGKFELAKAKYEKVLREfnhvNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRG 400
Cdd:COG2956  87 LKAGLLDRAEELLEKLLEL----DPDDAE-----------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA 151

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 401 MAYIAGGEYDDARNDFNMMIKVDKSSeADATAALLKLKQKEQEAEsKARKQFKGLFDKRP 460
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDC-ARALLLLAELYLEQGDYE-EAIAALERALEQDP 209
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 310-468 1.10e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.15  E-value: 1.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980   310 ADKIRSTGNRLFKEGKFELAKAKYEKVLRefnhvnpQDEDEgkifgdtrnMLHLNVAACLLKMGEWRKSIETCNKVLEAK 389
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIE-------CKPDP---------VYYSNRAACHNALGDWEKVVEDTTAALELD 190

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30693980   390 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKeqEAESKARKQFKGLFDKRPgEITEVGS 468
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK--FAESKAKEILETKPENLP-SVTFVGN 266
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 320-439 4.26e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 54.23  E-value: 4.26e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 320 LFKEGKFELAKAKYEKVLREFnhvnPQDEDEGKIfgdtrnmlHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVK---GL 396
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRY----PNSPLAPDA--------LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdAL 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVDKSSEAdATAALLKLKQ 439
Cdd:COG1729  71 LKLGLSYLELGDYDKARATLEELIKKYPDSEA-AKEARARLAR 112
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
1-54 1.02e-08

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 52.58  E-value: 1.02e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30693980     1 MILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDCpvsAPENFPKDDELHFEIELL 54
Cdd:pfam00254  44 VIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL---AGPVIPPNATLVFEVELL 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 317-453 1.22e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 1.22e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALK----LDPDCAR-----------ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVDKSSEA-DATAALLKLKQKEQEAESKARKQFK 453
Cdd:COG2956 216 PRLAELYEKLGDPEEALELLRKALELDPSDDLlLALADLLERKEGLEAALALLERQLR 273
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
320-425 1.97e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.71  E-value: 1.97e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 320 LFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIEtCNKVLEAKPGHVKGLYRR 399
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALE----LDPDNAD-----------ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65

                        90       100
                ....*....|....*....|....*.
gi 30693980 400 GMAYIAGGEYDDARNDFNMMIKVDKS 425
Cdd:COG3063  66 AELLLELGDYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 320-424 7.16e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 7.16e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 320 LFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRR 399
Cdd:COG5010  64 YNKLGDFEESLALLEQALQ----LDPNNPE-----------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL 128

                        90       100
                ....*....|....*....|....*
gi 30693980 400 GMAYIAGGEYDDARNDFNMMIKVDK 424
Cdd:COG5010 129 AALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 328-460 2.43e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 2.43e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 328 LAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGG 407
Cdd:COG5010  23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 30693980 408 EYDDARNDFNMMIKVD-KSSEADATAALLKLKQKEQEAeskARKQFKGLFDKRP 460
Cdd:COG5010 103 DKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDE---AKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 317-450 3.10e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 3.10e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG3914  85 ALLLQALGRYEEALALYRRALA----LNPDNAE-----------ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARK 450
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDpDNAEALNNLGNALQDLGRlEEAIAAYRR 205
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 317-423 4.21e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 4.21e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALE----LDPDEPE-----------ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAY 109

                        90       100
                ....*....|....*....|....*..
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVD 423
Cdd:COG4783 110 LRLARAYRALGRPDEAIAALEKALELD 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
368-460 8.35e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 8.35e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 368 CLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARnDFNMMIKVD-KSSEADATAALLKLKQKEQEaes 446
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDpNNAEALLNLAELLLELGDYD--- 76

                        90
                ....*....|....
gi 30693980 447 KARKQFKGLFDKRP 460
Cdd:COG3063  77 EALAYLERALELDP 90
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 362-460 1.36e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 1.36e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 362 HLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQK 440
Cdd:COG4783   7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKAG 86

                        90       100
                ....*....|....*....|
gi 30693980 441 EQEaesKARKQFKGLFDKRP 460
Cdd:COG4783  87 DYD---EALALLEKALKLDP 103
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 317-460 1.41e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.41e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhvnpQDEDegkifgdtRNMLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 396
Cdd:COG2956  49 GNLYRRRGEYDRAIRIHQKLLE-------RDPD--------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL 113

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30693980 397 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKEQEaesKARKQFKGLFDKRP 460
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYD---EAIEALEKALKLDP 175
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
78-167 1.52e-04

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 40.64  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980    78 GWESPREPYEVKARISAKSGDGHVIFS--HTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRkqylteSPLLHIDQ 155
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSsyDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIP------PELAYGEE 74

                          90       100
                  ....*....|....*....|
gi 30693980   156 DLEE--------VHFEVELV 167
Cdd:pfam00254  75 GLAGpvippnatLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 1-56 3.95e-04

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 39.78  E-value: 3.95e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 30693980   1 MILGLLEGIPTMHKGEIAMFKMKPEMHYAEIdcpvSAPENFPKDDELHFEIELLDF 56
Cdd:COG0545  53 VIPGWDEGLQGMKVGGKRRLVIPPELAYGER----GAGGVIPPNSTLVFEVELLDV 104
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 200-284 8.29e-04

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 39.70  E-value: 8.29e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 200 QDSRLSVHYKGMLlnEEKTVFYDSKidnNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAY----------- 268
Cdd:COG1047   3 KGDVVTLHYTLKL--EDGEVFDSTF---EGEPLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYgerdpelvqtv 77

                        90
                ....*....|....*...
gi 30693980 269 --DKFPRPPGVSEGAHVQ 284
Cdd:COG1047  78 prEQFPEDEELEVGMQVE 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 323-443 1.05e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980   323 EGKFELAKAKYEKVLREfnhvNPQDEDEgkifgdtrnmlhLNVAACLLKM-GEWRKSIETCNKVLEAKPGHVKGLYRRGM 401
Cdd:TIGR02917 172 ENRFDEARALIDEVLTA----DPGNVDA------------LLLKGDLLLSlGNIELALAAYRKAIALRPNNIAVLLALAT 235

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 30693980   402 AYIAGGEYDDARNDFNMMIK-VDKSSEADATAALLKLKQKEQE 443
Cdd:TIGR02917 236 ILIEAGEFEEAEKHADALLKkAPNSPLAHYLKALVDFQKKNYE 278
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
387-423 6.20e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 6.20e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 30693980 387 EAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVD 423
Cdd:COG4785  67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 379-450 7.00e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 7.00e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30693980 379 IETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADAT--AALLKLKQKEQEAESKARK 450
Cdd:COG4235   3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLdlAEALLAAGDTEEAEELLER 76
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
317-458 7.82e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.32  E-value: 7.82e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30693980 317 GNRLFKEGKFELAKAKYEKVLRefnhvnpqdedegKIFGDTRNMLhLNVAACLLKMGEWRKSIETCNKVLEAKP----GH 392
Cdd:COG4700  96 ADALLELGRYDEAIELYEEALT-------------GIFADDPHIL-LGLAQALFELGRYAEALETLEKLIAKNPdfksSD 161

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30693980 393 VKGLYrrGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAeskARKQFKGLFDK 458
Cdd:COG4700 162 AHLLY--ARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAE---AKELLEEILDE 222
TPR_1 pfam00515
Tetratricopeptide repeat;
393-423 8.58e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 8.58e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 30693980   393 VKGLYRRGMAYIAGGEYDDARNDFNMMIKVD 423
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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