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Conserved domains on  [gi|30694440|ref|NP_850709|]
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hypothetical protein (DUF3133) [Arabidopsis thaliana]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10568316)

zinc ribbon domain-containing protein similar to Arabidopsis thaliana protein ENHANCED DISEASE RESISTANCE 4 that plays a negative role in salicylic acid (SA)-mediated resistance to powdery mildew (e.g. Golovinomyces cichoracearum)

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_12 pfam11331
Probable zinc-ribbon domain; This eukaryotic family of proteins has no known function.
 330-374 4.04e-19

Probable zinc-ribbon domain; This eukaryotic family of proteins has no known function.


:

Pssm-ID: 431819  Cd Length: 45  Bit Score: 81.85  E-value: 4.04e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 30694440    330 AGGAPFATCSYCLELLQLPQVSPQGKRQRYQVRCGSCSGVLKFSI 374
Cdd:pfam11331    1 AGGAPFITCSNCFELLQLPKKFLLFKKKQQKLRCGACSEVLSFSL 45
 
Name Accession Description Interval E-value
zinc_ribbon_12 pfam11331
Probable zinc-ribbon domain; This eukaryotic family of proteins has no known function.
 330-374 4.04e-19

Probable zinc-ribbon domain; This eukaryotic family of proteins has no known function.


Pssm-ID: 431819  Cd Length: 45  Bit Score: 81.85  E-value: 4.04e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 30694440    330 AGGAPFATCSYCLELLQLPQVSPQGKRQRYQVRCGSCSGVLKFSI 374
Cdd:pfam11331    1 AGGAPFITCSNCFELLQLPKKFLLFKKKQQKLRCGACSEVLSFSL 45
 
Name Accession Description Interval E-value
zinc_ribbon_12 pfam11331
Probable zinc-ribbon domain; This eukaryotic family of proteins has no known function.
 330-374 4.04e-19

Probable zinc-ribbon domain; This eukaryotic family of proteins has no known function.


Pssm-ID: 431819  Cd Length: 45  Bit Score: 81.85  E-value: 4.04e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 30694440    330 AGGAPFATCSYCLELLQLPQVSPQGKRQRYQVRCGSCSGVLKFSI 374
Cdd:pfam11331    1 AGGAPFITCSNCFELLQLPKKFLLFKKKQQKLRCGACSEVLSFSL 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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