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Conserved domains on  [gi|145361962|ref|NP_850980|]
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K-box region and MADS-box transcription factor family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
K-box super family cl03234
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 86-126 2.06e-07

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


The actual alignment was detected with superfamily member pfam01486:

Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 45.92  E-value: 2.06e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 145361962   86 SVDSLISLEEQLETALSVSRARKAELMMEYIESLKEKVSAL 126
Cdd:pfam01486  39 SLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERIL 79
 
Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 86-126 2.06e-07

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 45.92  E-value: 2.06e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 145361962   86 SVDSLISLEEQLETALSVSRARKAELMMEYIESLKEKVSAL 126
Cdd:pfam01486  39 SLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERIL 79
 
Name Accession Description Interval E-value
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 86-126 2.06e-07

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 45.92  E-value: 2.06e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 145361962   86 SVDSLISLEEQLETALSVSRARKAELMMEYIESLKEKVSAL 126
Cdd:pfam01486  39 SLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERIL 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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