|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
26-862 |
1.24e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 26 LLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSlcKARERETESEEhfkaiAQRELGRVKDEIQRLE 105
Cdd:TIGR02168 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL--EVSELEEEIEE-----LQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 106 NEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAhkdsdalTLQKYAQQDDNKIRALTLQLERLTLEC 185
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE-------ELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 186 NQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKEnlvkek 265
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE------ 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 266 ikfLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALrKNISKIKKDIHEETAR 345
Cdd:TIGR02168 449 ---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV-KALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 346 LQktknhnEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLF----KKAQELQTETMKEKAVLS 421
Cdd:TIGR02168 525 LS------ELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLpldsIKGTEIQGNDREILKNIE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 422 EIEGTRSSLKHLNHQLQKL------------DFETLKQQEIMYSQDFHI-----QQVERRMSRLKGEINSEEK-QALEAK 483
Cdd:TIGR02168 599 GFLGVAKDLVKFDPKLRKAlsyllggvlvvdDLDNALELAKKLRPGYRIvtldgDLVRPGGVITGGSAKTNSSiLERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 484 IVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNL 563
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 564 LKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQEREnistEFRERLSKIEKLKNRYE 643
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE----EAANLRERLESLERRIA 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 644 ILTVVMLPPEGEEEKTQAYyVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNscnnnykqsfkkvtpssDEY 723
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALLNERASLEEALALLR-----------------SEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 724 ElkiQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLERVTK-Q 802
Cdd:TIGR02168 897 E---ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrR 973
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157785668 803 CAKLTKEIRLLKDTKDETMEE-QDIKLRE---MKQFHKVID--EMLVDIIEE-NTEIRIILQTYFQQ 862
Cdd:TIGR02168 974 LKRLENKIKELGPVNLAAIEEyEELKERYdflTAQKEDLTEakETLEEAIEEiDREARERFKDTFDQ 1040
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
74-350 |
3.85e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 3.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 74 KARERETESEEHFKAI--AQRELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLkcqmnwdQQALEAWLEESA 151
Cdd:COG1196 219 KEELKELEAELLLLKLreLEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL-------ELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 152 HKDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTI 231
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 232 EQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGEL 311
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270
....*....|....*....|....*....|....*....
gi 157785668 312 DSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTK 350
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
202-557 |
6.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 6.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 202 AQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKrdgdidncALELARIKQETREKENLV--------KEKIKFLESEI 273
Cdd:TIGR02168 177 TERKLERTRENLDRLEDILNELERQLKSLERQAEK--------AERYKELKAELRELELALlvlrleelREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 274 GNNT----EFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKT 349
Cdd:TIGR02168 249 KEAEeeleELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 350 KNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEvdvqlnlikgvLFKKAQELQTEtmkekavlseIEGTRSS 429
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE-----------LESRLEELEEQ----------LETLRSK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 430 LKHLNHQLQKLDfetlKQQEIMYSQdfhIQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLH 509
Cdd:TIGR02168 388 VAQLELQIASLN----NEIERLEAR---LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 157785668 510 NDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDL 557
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-859 |
2.79e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 168 DNKIRALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALE 247
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 248 LARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKatvnrtsSDLEA 327
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE-------KEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 328 LRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEktmsVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQ 407
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISE----LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 408 ELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETL-----KQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQ--AL 480
Cdd:TIGR04523 261 EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIisQL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 481 EAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIE 560
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 561 DNLLKLEVKRTREMLHSKAEEVLSLEKRKQQL---YTAMEERTEEIKVHKTMLASQIRYVDQERENISTEFRERLSKIEK 637
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDLTNQDSVKeliIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKK 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 638 LKnryeiltvvmlppegEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNScnNNYKQSFKKVT 717
Cdd:TIGR04523 501 LN---------------EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF--ELKKENLEKEI 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 718 PSSDEyELKiQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLE 797
Cdd:TIGR04523 564 DEKNK-EIE-ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157785668 798 rvtkqcaKLTKEIRLLKDTKDETMEEQDIKLREMKQFHKVIDEMLVDIIEENTEIRIILQTY 859
Cdd:TIGR04523 642 -------KLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKY 696
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
19-494 |
9.54e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 9.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 19 VANEENKLLEDQLSKLKDERASLQDELREYEErinsmtshfknvkQELSITQSLCKARERETESEEhfkaiAQRELGRVK 98
Cdd:PRK02224 196 IEEKEEKDLHERLNGLESELAELDEEIERYEE-------------QREQARETRDEADEVLEEHEE-----RREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 99 DEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQMN----------WDQQALEAWLEESAHKDSdalTLQKYAQQDD 168
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDdllaeaglddADAEAVEARREELEDRDE---ELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 169 NKIRALTLQLERLTlecnQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALEL 248
Cdd:PRK02224 335 VAAQAHNEEAESLR----EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 249 ARIKQETREKENLVKEKIKFLESEIgnnTEFEKRISVADRKLL--KCRTAYQDHETSRI------------QLKGELDSL 314
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATL---RTARERVEEAEALLEagKCPECGQPVEGSPHvetieedrerveELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 315 KATVNRTSSDLEALrKNISKIKKDIHEetaRLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMlkEEEKDVKEvdvq 394
Cdd:PRK02224 488 EEEVEEVEERLERA-EDLVEAEDRIER---LEERREDLEELIAERRETIEEKRERAEELRERAAEL--EAEAEEKR---- 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 395 lnlikgvlfKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLdfetlkqQEIMYSQDFHIQQVERRMSRLKG--EI 472
Cdd:PRK02224 558 ---------EAAAEAEEEAEEAREEVAELNSKLAELKERIESLERI-------RTLLAAIADAEDEIERLREKREAlaEL 621
|
490 500
....*....|....*....|..
gi 157785668 473 NSEEKQALEAKiVELRKSLEEK 494
Cdd:PRK02224 622 NDERRERLAEK-RERKRELEAE 642
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
140-851 |
1.10e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 140 QQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERlTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNE 219
Cdd:PTZ00121 1122 KKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED-ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 220 RQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQD 299
Cdd:PTZ00121 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 300 HETSRIQLKGELDSLKATvnrtssdlEALRKNISKIKKdiHEETARLQKTKNHNEIIQTKLKEITEKTmsvEEKATNLED 379
Cdd:PTZ00121 1281 DELKKAEEKKKADEAKKA--------EEKKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKA---EEAKKAAEA 1347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 380 MLKEEEKDVKEVDvqlnliKGVLFKKAQELQTETMKEKAvlseiegtrSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQ 459
Cdd:PTZ00121 1348 AKAEAEAAADEAE------AAEEKAEAAEKKKEEAKKKA---------DAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 460 QVERRMSRLKGEINSEEKQALEakivELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDE---KQSLMTKINEL 536
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKAD----EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEakkKAEEAKKADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 537 NLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEE--RTEEIKVHKTMLASQI 614
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElkKAEELKKAEEKKKAEE 1568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 615 RYVDQERENISTEFRERLSKIEKLKNRYEILTVVMLPP-------EGEEEKTQAYYVIKAAQEKEELQREGDCLDAKINK 687
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmkaeeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 688 AEKEIYALENTLQVLNSCNNNYKQSFKKVTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHL 767
Cdd:PTZ00121 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 768 ANNVKE--KLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLLKDT--KDETMEEQDIKLREMKQFHKVIDEMLV 843
Cdd:PTZ00121 1729 KIKAEEakKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAviEEELDEEDEKRRMEVDKKIKDIFDNFA 1808
|
....*...
gi 157785668 844 DIIEENTE 851
Cdd:PTZ00121 1809 NIIEGGKE 1816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
20-633 |
1.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 20 ANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSLCKARERETESEEHFKAIAQRELGRVKD 99
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 100 EIQRLENEMASI---LEKKSDKENGIFKATQKLDGLKCQMNWDQ--QALEAWLEESAHKDSDALTLQKYAQQDDNKIRAL 174
Cdd:TIGR02168 401 EIERLEARLERLedrRERLQQEIEELLKKLEEAELKELQAELEEleEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 175 TLQLERLTLECNQKRKILDNELTETISAqLELDKAAQDFRKIHNERQELIK---QWENTIEQ-MQKRDGDIDNCALELAR 250
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGV-KALLKNQSGLSGILGVLSELISvdeGYEAAIEAaLGGRLQAVVVENLNAAK 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 251 IKQETREKENLvkEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRK 330
Cdd:TIGR02168 560 KAIAFLKQNEL--GRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALEL 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 331 NISK-------------------IKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEV 391
Cdd:TIGR02168 638 AKKLrpgyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 392 DVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGE 471
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 472 INSEEKQ--ALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDK 549
Cdd:TIGR02168 798 LKALREAldELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 550 AKgfkqdlmIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASqiryVDQERENISTEFR 629
Cdd:TIGR02168 878 LL-------NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG----LEVRIDNLQERLS 946
|
....
gi 157785668 630 ERLS 633
Cdd:TIGR02168 947 EEYS 950
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
140-399 |
2.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 140 QQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNE 219
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 220 RQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQD 299
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 300 HETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLED 379
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260
....*....|....*....|
gi 157785668 380 MLKEEEKDVKEVDVQLNLIK 399
Cdd:COG1196 478 ALAELLEELAEAAARLLLLL 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
29-829 |
3.13e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 29 DQLSKLKDERA------SLQDELREYE-----ERINSMTSHFKNVKQELS-ITQSLCKARERETESEEHFKAIAQReLGR 96
Cdd:TIGR02169 198 QQLERLRREREkaeryqALLKEKREYEgyellKEKEALERQKEAIERQLAsLEEELEKLTEEISELEKRLEEIEQL-LEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 97 VKDEIQRL-ENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALT 175
Cdd:TIGR02169 277 LNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 176 LQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQET 255
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 256 REKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVnRTSSDLEALRKNISKI 335
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA-RASEERVRGGRAVEEV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 336 KKD----IHEETARLQKTK-NHNEIIQT----KLKEITEKTMSVEEKATNLedmLKEE-----------EKDVKEVDVQL 395
Cdd:TIGR02169 516 LKAsiqgVHGTVAQLGSVGeRYATAIEVaagnRLNNVVVEDDAVAKEAIEL---LKRRkagratflplnKMRDERRDLSI 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 396 NLIKGVLFKKAQELQTETMKEKAVLSEIEGTrsslkhlnhqLQKLDFETLKQQEIMYsqdfhiqqverRMSRLKGEInSE 475
Cdd:TIGR02169 593 LSEDGVIGFAVDLVEFDPKYEPAFKYVFGDT----------LVVEDIEAARRLMGKY-----------RMVTLEGEL-FE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 476 EKQALEAKIVELRKSLEEKKStcglLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQ 555
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRS----EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 556 DLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQEReniSTEFRERLSKI 635
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR---IPEIQAELSKL 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 636 EKLKNRYEILTVVMLPPEGEEEKTQAYyvikAAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNSCNNNYKqsfkk 715
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKEY----LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE----- 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 716 vtpsSDEYELKIQLEEQKRAVDEKyrykQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQK-- 793
Cdd:TIGR02169 875 ----AALRDLESRLGDLKKERDEL----EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEei 946
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 157785668 794 ----PKLERVTKQCAKLTKEIRLLKDTKDETMEEQDIKLR 829
Cdd:TIGR02169 947 peeeLSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
21-611 |
7.36e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 7.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 21 NEENKLLEDQLSK---LKDERASLQDELREYEERINSMTSHFKNVKQELSitqslcKARERETESEEHFKAIAQRELgrv 97
Cdd:PRK03918 175 KRRIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREELE------KLEKEVKELEELKEEIEELEK--- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 98 kdEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQmnwdqqalEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQ 177
Cdd:PRK03918 246 --ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 178 LERLTLECNQKRKILD------NELTETISAQLELDKAAQDFRKIHNERQElIKQWENTIEQMQKRDG-----DIDNCAL 246
Cdd:PRK03918 316 LSRLEEEINGIEERIKeleekeERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRLTgltpeKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 247 ELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRI--QLKGELDSLKATVNRTSSD 324
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 325 LEALRKNISKIKKDIHEETARLqktknhneiiqtKLKEITEKTMSVEEK--ATNLEDmLKEEEKDVKEVDVQLNLIKG-- 400
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELI------------KLKELAEQLKELEEKlkKYNLEE-LEKKAEEYEKLKEKLIKLKGei 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 401 -VLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQ--QEIMYSQDFHIQQVERRMSRLKGEINSEEK 477
Cdd:PRK03918 542 kSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEleERLKELEPFYNEYLELKDAEKELEREEKEL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 478 QALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDlyFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDL 557
Cdd:PRK03918 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKK--YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 157785668 558 miednllklevKRTREMLHSKAEEVLSLEKRKQQlytaMEERTEEIKVHKTMLA 611
Cdd:PRK03918 700 -----------KEELEEREKAKKELEKLEKALER----VEELREKVKKYKALLK 738
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
308-840 |
1.08e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 308 KGELDSLKATVNRTSSDLEALRKNISKIKKdiheETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKD 387
Cdd:PRK03918 199 EKELEEVLREINEISSELPELREELEKLEK----EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 388 VKEVDVQLNLIKGV--LFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRM 465
Cdd:PRK03918 275 IEELEEKVKELKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 466 SRLKGEINS-EEKQALEAKIVELRKSLEEKksTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSE 544
Cdd:PRK03918 355 EELEERHELyEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 545 KELDKAKGFKQDLMIED--NLLK---LEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKtmLASQIRYVDQ 619
Cdd:PRK03918 433 KAKGKCPVCGRELTEEHrkELLEeytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE--LAEQLKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 620 ERENISTEfrerlsKIEKLKNRYEILTVVMLPPEGEEEKtqayyVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTL 699
Cdd:PRK03918 511 KLKKYNLE------ELEKKAEEYEKLKEKLIKLKGEIKS-----LKKELEKLEELKKKLAELEKKLDELEEELAELLKEL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 700 QVLN-SCNNNYKQSFKKVTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEk 778
Cdd:PRK03918 580 EELGfESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE- 658
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157785668 779 qaysfqlsKETEEQKPKLERVTKQCAKLTKEIRLLKDTKDETMEEQDIKLREMKQFHKVIDE 840
Cdd:PRK03918 659 --------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
178-517 |
1.13e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 178 LERLTLECNQKRKILDNELTEtisAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETRE 257
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDE---LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 258 kenlVKEKIKFLESEIGNNTEFEKRI--SVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKI 335
Cdd:TIGR02169 763 ----LEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 336 KKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKgvlfKKAQELQTETMK 415
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE----RKIEELEAQIEK 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 416 EKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQD---FHIQQVERRMSRLkGEINSEEKQalEAKIVELR-KSL 491
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEdvqAELQRVEEEIRAL-EPVNMLAIQ--EYEEVLKRlDEL 991
|
330 340
....*....|....*....|....*.
gi 157785668 492 EEKKSTCGLLETQIKKLHNDLYFIKK 517
Cdd:TIGR02169 992 KEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
261-811 |
1.47e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 261 LVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNR---TSSDLEALRKNISKIKK 337
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleeLKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 338 DIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEE--KATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETMK 415
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 416 EKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDfHIQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKK 495
Cdd:PRK03918 333 LEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE-ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 496 STCGLLETQIKKLHNDLYFIKKAHSK--------NSDEKQSLMtkiNELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLE 567
Cdd:PRK03918 412 ARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKELL---EEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 568 VKRTREM--LHSKAEEVLSLE-----------KRKQQLYTAMEE-----------------RTEEIKVHKTMLASQIRYV 617
Cdd:PRK03918 489 LKKESELikLKELAEQLKELEeklkkynleelEKKAEEYEKLKEkliklkgeikslkkeleKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 618 DQERENISTEFRER-LSKIEKLKNRYEILtvvmlppegEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKEIYALE 696
Cdd:PRK03918 569 EEELAELLKELEELgFESVEELEERLKEL---------EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 697 NTLQVLNSCNNNYKQSFKkvtpssdeyelkiqlEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLS 776
Cdd:PRK03918 640 KRLEELRKELEELEKKYS---------------EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
570 580 590
....*....|....*....|....*....|....*
gi 157785668 777 EKQAYSFQLSKeTEEQKPKLERVTKQCAKLTKEIR 811
Cdd:PRK03918 705 EREKAKKELEK-LEKALERVEELREKVKKYKALLK 738
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
20-261 |
2.92e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 20 ANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQS----LCKARERETESEEHFKAIAQR--- 92
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAelarLEQDIARLEERRRELEERLEElee 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 93 ELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIR 172
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 173 ALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIK 252
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
....*....
gi 157785668 253 QETREKENL 261
Cdd:COG1196 484 EELAEAAAR 492
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
14-258 |
4.59e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 14 GFAIPVANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQslckARERETESEEhfkAIAQRE 93
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQEL---AALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 94 LGRVKDEIQRLENEmasiLEKKSDKENGIFKATQKLDglkcqmnwDQQALEAWL--EESAHKDSDALTLQKYAQQDDNKI 171
Cdd:COG4942 85 LAELEKEIAELRAE----LEAQKEELAELLRALYRLG--------RQPPLALLLspEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 172 RALTL---QLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALEL 248
Cdd:COG4942 153 EELRAdlaELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
250
....*....|
gi 157785668 249 ARIKQETREK 258
Cdd:COG4942 233 EAEAAAAAER 242
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
282-813 |
5.86e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 5.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 282 RISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLK 361
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 362 EITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLD 441
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 442 FETLKQQEimysqdfHIQQVERRMSRLKGEINS---------EEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDL 512
Cdd:COG1196 393 RAAAELAA-------QLEELEEAEEALLERLERleeeleeleEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 513 YFIKKAHSKNSDEKQSLMTKINELnlfidRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQL 592
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEA-----AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 593 YTAMEERTEEIKVHKTMLASQ-IRYVDQERENISTEFRERLSKIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIKAAQEK 671
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAaIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 672 EELQREGDCLDAK-----INKAEKEIYALENTLQVLNSCNNNYKQSFKKVTPSS------------DEYELKIQLEEQKR 734
Cdd:COG1196 621 TLLGRTLVAARLEaalrrAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALleaeaeleelaeRLAEEELELEEALL 700
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 157785668 735 AVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLL 813
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
177-494 |
6.12e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 6.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 177 QLERLTLECNQKRK--ILDNELTEtisaqLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQE 254
Cdd:COG1196 201 QLEPLERQAEKAERyrELKEELKE-----LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 255 TREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLlkcrtayQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISK 334
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLEQDIARLEERR-------RELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 335 IKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETM 414
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 415 KEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEInsEEKQALEAKIVELRKSLEEK 494
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL--AEAAARLLLLLEAEADYEGF 506
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
20-550 |
6.50e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 6.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 20 ANEENKLLEDQLSKLKDERASLQDELRE----YEERINSMTSHFKNVKQELSitqslckarERETESEEHfkaiaQRELG 95
Cdd:pfam15921 308 ARNQNSMYMRQLSDLESTVSQLRSELREakrmYEDKIEELEKQLVLANSELT---------EARTERDQF-----SQESG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 96 RVKDEIQRL-----ENEMASILEKKSDKE--NGIFKATQKLDGLKCQM---NWDQQALEAWLEESAHKDSDALTLQKYAQ 165
Cdd:pfam15921 374 NLDDQLQKLladlhKREKELSLEKEQNKRlwDRDTGNSITIDHLRRELddrNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 166 QDDN----KIRALTLQLErltlecnQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDI 241
Cdd:pfam15921 454 QGKNesleKVSSLTAQLE-------STKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 242 DNCALELARIKQETREKENLVKEkikfLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRT 321
Cdd:pfam15921 527 DLKLQELQHLKNEGDHLRNVQTE----CEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 322 SSDLEALRknISKIKKD--IHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIK 399
Cdd:pfam15921 603 RLELQEFK--ILKDKKDakIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 400 GVLFKKAQELQTET----MKEKAVLSEIEGTRSSLKHlnhqlqkldfetlkqqeiMYSQDFHIQQVERRMSRlkgEINSE 475
Cdd:pfam15921 681 RNFRNKSEEMETTTnklkMQLKSAQSELEQTRNTLKS------------------MEGSDGHAMKVAMGMQK---QITAK 739
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157785668 476 EKQ--ALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKA 550
Cdd:pfam15921 740 RGQidALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
21-566 |
9.65e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 9.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 21 NEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSlckarereteseehfkaiaqrELGRVKDE 100
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD---------------------EQNKIKKQ 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 101 IQRLENEMASILEKKSDKENGIFKATQKLDGLKcqmnwdQQALEAWLEESahkDSDALTLQKYAQQDDNKIRALTLQLER 180
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLN------NQKEQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQ 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 181 LTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKEN 260
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 261 LVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEalrknisKIKKDIH 340
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE-------QKQKELK 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 341 EETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLfkKAQELQTETMKEKAVL 420
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL--KKENLEKEIDEKNKEI 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 421 SEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQdfhIQQVERRMSRLKGEINSEEKQalEAKIVELRKSLEEKKSTcgl 500
Cdd:TIGR04523 571 EELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKE---IEEKEKKISSLEKELEKAKKE--NEKLSSIIKNIKSKKNK--- 642
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 157785668 501 LETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKL 566
Cdd:TIGR04523 643 LKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPK 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
361-661 |
1.17e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 361 KEITEKTM-SVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTE----TMKEKAVLSEIEGTRSSLKHLNH 435
Cdd:TIGR02168 174 RKETERKLeRTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELElallVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 436 QLQKLDFE-TLKQQEIMYSQDFHiQQVERRMSRLKGEINS--EEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDL 512
Cdd:TIGR02168 254 ELEELTAElQELEEKLEELRLEV-SELEEEIEELQKELYAlaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 513 YFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQL 592
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157785668 593 YTAMEERTEEIKVH--------KTMLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILTVVMLPPEGEEEKTQA 661
Cdd:TIGR02168 413 EDRRERLQQEIEELlkkleeaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
299-762 |
1.62e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 299 DHETSRIQLKGELDSLKATVNRTSSDLEALR-----------KNISKIKKDIHEETARLQKTKNHNEiiqTKLKEITEKT 367
Cdd:pfam15921 275 EHEVEITGLTEKASSARSQANSIQSQLEIIQeqarnqnsmymRQLSDLESTVSQLRSELREAKRMYE---DKIEELEKQL 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 368 MSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQ 447
Cdd:pfam15921 352 VLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 448 QEIMYSQDFHIQ-QVERRMSRLKGEINSEEK-----------------------------QALEAKIVELRKSLEEKKST 497
Cdd:pfam15921 432 EALLKAMKSECQgQMERQMAAIQGKNESLEKvssltaqlestkemlrkvveeltakkmtlESSERTVSDLTASLQEKERA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 498 CGLLETQIKKLHN--DLYFIKKAHSKNSDEK-QSLMTKINELNLFIDRSEKELDKAKGFKQDLM--------------IE 560
Cdd:pfam15921 512 IEATNAEITKLRSrvDLKLQELQHLKNEGDHlRNVQTECEALKLQMAEKDKVIEILRQQIENMTqlvgqhgrtagamqVE 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 561 DNLLKLEVKRTREMLhskaEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQ-------IRYVDQERENISTEFRERLS 633
Cdd:pfam15921 592 KAQLEKEINDRRLEL----QEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgserlraVKDIKQERDQLLNEVKTSRN 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 634 KIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIKAAQEKEELQREGDCLDA-----------------KINKAEKEIYALE 696
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegsdghamkvamgmqkQITAKRGQIDALQ 747
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157785668 697 NTLQVLNSC--NNNYKQSFKKVTPSSDEYELKIQLEEQKRAVDEkYRYKQRQIRELQEDIQSMENTLD 762
Cdd:pfam15921 748 SKIQFLEEAmtNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE-LEVLRSQERRLKEKVANMEVALD 814
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
427-704 |
1.75e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 427 RSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKKSTCGLLETQIK 506
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 507 KLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLE 586
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 587 KRKQQLYTAMEERTEEIKVhktmLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILTVVMLpPEGEEEKTQAYYVIK 666
Cdd:COG1196 379 EELEELAEELLEALRAAAE----LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAE 453
|
250 260 270
....*....|....*....|....*....|....*...
gi 157785668 667 AAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNS 704
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
168-479 |
2.04e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 168 DNKIRALTLQLERLTLECNQKRK--ILDNELTETISAQL--ELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDN 243
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELlkEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 244 CALEL----ARIKQETREKENLVKEKIKFLESEI----GNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLK 315
Cdd:TIGR02169 270 IEQLLeelnKKIKDLGEEEQLRVKEKIGELEAEIasleRSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 316 ATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQL 395
Cdd:TIGR02169 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 396 NLIKGvlfkKAQELQTETMKEKAVLSEIEGTRSSLKHlnhqlqklDFETLKQQEIMYSQDfhIQQVERRMSRLKGEINSE 475
Cdd:TIGR02169 430 AGIEA----KINELEEEKEDKALEIKKQEWKLEQLAA--------DLSKYEQELYDLKEE--YDRVEKELSKLQRELAEA 495
|
....
gi 157785668 476 EKQA 479
Cdd:TIGR02169 496 EAQA 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
39-391 |
2.16e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 39 ASLQDELREYEERINSMtshfknvKQELSITQSlcKARERETESEEHFKAI--AQRELGRVKDEIQRLENEMASILEKKS 116
Cdd:TIGR02169 670 RSEPAELQRLRERLEGL-------KRELSSLQS--ELRRIENRLDELSQELsdASRKIGEIEKEIEQLEQEEEKLKERLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 117 DKENGIFKATQKLDGLKCQMNwDQQALEAWLEESAHKDSDALTlQKYAQQDDNKIRALTLQLERLTLECNQKRKILDnel 196
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALN-DLEARLSHSRIPEIQAELSKLEEEVSRIEARLR--- 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 197 tetiSAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNN 276
Cdd:TIGR02169 816 ----EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 277 TEFEKRISVADRKLLKCRTAYQDHETSRIQLK-------GELDSLKATVNRTSSDLEALrKNISKIKKDIHEETARLQKT 349
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKaklealeEELSEIEDPKGEDEEIPEEE-LSLEDVQAELQRVEEEIRAL 970
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 157785668 350 KNHN-------EIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEV 391
Cdd:TIGR02169 971 EPVNmlaiqeyEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
27-646 |
5.54e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 27 LEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSLCKARERETESEEHFKAIAQRELGRVKDEIQRLEN 106
Cdd:TIGR04523 73 SNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 107 EMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKDSDALTLQKYAQqddnKIRALTLQLERLTLECN 186
Cdd:TIGR04523 153 ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 187 QKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENlvkeki 266
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN------ 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 267 kflESEIGNNTEFEKRISVADRKLlkcrtayQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARL 346
Cdd:TIGR04523 303 ---QKEQDWNKELKSELKNQEKKL-------EEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 347 QKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKgvlfKKAQELQTETMKEKAVLSEIEGT 426
Cdd:TIGR04523 373 EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLE----KEIERLKETIIKNNSEIKDLTNQ 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 427 RSSLKHLNHQLqkldfetlkqqeimysqDFHIQQVERRMSRLKGEINSeEKQALEAKivelRKSLEEKKSTCGLLETQIK 506
Cdd:TIGR04523 449 DSVKELIIKNL-----------------DNTRESLETQLKVLSRSINK-IKQNLEQK----QKELKSKEKELKKLNEEKK 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 507 KLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNllKLEVKRTREMLHSKAEEVLSLE 586
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE--IDEKNKEIEELKQTQKSLKKKQ 584
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 587 KRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILT 646
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-551 |
7.03e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 322 SSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIkgv 401
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 402 lfKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLkqqeIMYSQDFhIQQVERRMSRLKGEIN--SEEKQA 479
Cdd:COG4942 96 --RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRR----LQYLKYL-APARREQAEELRADLAelAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 157785668 480 LEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAK 551
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
170-440 |
7.50e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 7.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 170 KIRALTLQLERLtlecNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQElikqwenTIEQMQKRDGDIDNCALELA 249
Cdd:COG1196 233 KLRELEAELEEL----EAELEELEAELEELEAELAELEAELEELRLELEELEL-------ELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 250 RIKQETREKENLVKEKIKFLESEIgnnTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALR 329
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 330 KNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQEL 409
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270
....*....|....*....|....*....|.
gi 157785668 410 QTETMKEKAVLSEIEGTRSSLKHLNHQLQKL 440
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
27-758 |
1.28e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 27 LEDQLSKLKDERASLQDELREYEERINSMTshfknvkqelsitqslckareretesEEHFKAIaQRELGRVKDEIQRLEN 106
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLG--------------------------EEEQLRV-KEKIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 107 EMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAhkdsdaltlqkyaqqddnkirALTLQLERLTLECN 186
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD---------------------KLTEEYAELKEELE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 187 QKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKI 266
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 267 KFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVnRTSSDLEALRKNISKIKKD----IHEE 342
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA-RASEERVRGGRAVEEVLKAsiqgVHGT 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 343 TARLQKTK-NHNEIIQT----KLKEITEKTMSVEEKATNLedmLKEE-----------EKDVKEVDVQLNLIKGVLFKKA 406
Cdd:TIGR02169 527 VAQLGSVGeRYATAIEVaagnRLNNVVVEDDAVAKEAIEL---LKRRkagratflplnKMRDERRDLSILSEDGVIGFAV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 407 QELQTETMKEKA---------VLSEIEGTRSSLkhLNHQLQKLDFETLKQQEIMY--------------SQDFHIQQVER 463
Cdd:TIGR02169 604 DLVEFDPKYEPAfkyvfgdtlVVEDIEAARRLM--GKYRMVTLEGELFEKSGAMTggsraprggilfsrSEPAELQRLRE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 464 RMSRLKGEINSeekqaLEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRS 543
Cdd:TIGR02169 682 RLEGLKRELSS-----LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 544 EKELDKAKGFKQDLMIEDNLLKLEV-KRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQERE 622
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 623 NISTEFRERLSKIEKLKNRYEILTVVMLPPEGEEEKTQAyYVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTLQVL 702
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 157785668 703 NSCNNNYKQSFKKVTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSME 758
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE 971
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
93-646 |
1.83e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 93 ELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIR 172
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 173 ALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELaRIK 252
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL-LKL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 253 QETREKENLVKEKIKFLESEIGN----NTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEAL 328
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISElkkqNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 329 RKNISKIKKDIHEETARLQKTKNHNEiiQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVL------ 402
Cdd:TIGR04523 280 NKKIKELEKQLNQLKSEISDLNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELtnsese 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 403 -FKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEInseekQALE 481
Cdd:TIGR04523 358 nSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI-----ERLK 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 482 AKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDlmied 561
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKE----- 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 562 nlLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLasqiryvdqERENISTEFRERLSKIEKLKNR 641
Cdd:TIGR04523 508 --LEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL---------KKENLEKEIDEKNKEIEELKQT 576
|
....*
gi 157785668 642 YEILT 646
Cdd:TIGR04523 577 QKSLK 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-615 |
2.01e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 22 EENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSLCKARERETESEEHFKAIAQRELGRVKDEI 101
Cdd:TIGR02169 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 102 QRLENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERL 181
Cdd:TIGR02169 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 182 TLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQK-RDGDIDNCALEL------------ 248
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAsEERVRGGRAVEEvlkasiqgvhgt 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 249 --------------------ARIKQETREKENLVKEKIKFLESEIG-------------------------------NNT 277
Cdd:TIGR02169 527 vaqlgsvgeryataievaagNRLNNVVVEDDAVAKEAIELLKRRKAgratflplnkmrderrdlsilsedgvigfavDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 278 EFEKRISVADRKLLKCRTAYQDHETSR------------------------------------IQLKGELDSLKATVNRT 321
Cdd:TIGR02169 607 EFDPKYEPAFKYVFGDTLVVEDIEAARrlmgkyrmvtlegelfeksgamtggsraprggilfsRSEPAELQRLRERLEGL 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 322 SSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGV 401
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 402 LfkkaQELQTETMKEKAVLSEIEG--TRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQ- 478
Cdd:TIGR02169 767 I----EELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQr 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 479 -ALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEkqslmtkinelnlfIDRSEKELDKAKGFKQDL 557
Cdd:TIGR02169 843 iDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE--------------RDELEAQLRELERKIEEL 908
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 157785668 558 MIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIR 615
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
473-692 |
2.62e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 473 NSEEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKG 552
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 553 FKQDLMieDNLLKLEvKRTREMLHSKAEEVLSLEKRK---QQLYTAMEERTEEIKVHKTMLASQIRYVDQERENISTEFR 629
Cdd:COG4942 105 ELAELL--RALYRLG-RQPPLALLLSPEDFLDAVRRLqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 157785668 630 ERLSKIEKLKNRYEILTVVMLPPEGEEEKTQayyvikaaQEKEELQREGDCLDAKINKAEKEI 692
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELA--------AELAELQQEAEELEALIARLEAEA 236
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
19-493 |
3.34e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 19 VANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQslcKARERETESEEHFKAIAQRELGRVK 98
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE---AELAEAEEALLEAEAELAEAEEELE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 99 DEIQRLENEMASILEKKSDKENGIFKATQKLDglkcqmnwDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQL 178
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLE--------RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 179 ERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNC-------------- 244
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavligvea 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 245 -------ALELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKAT 317
Cdd:COG1196 535 ayeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 318 ----------VNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKD 387
Cdd:COG1196 615 yyvlgdtllgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 388 VKEVDVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMysqDFHIQQVERRMSR 467
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE---PPDLEELERELER 771
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 157785668 468 LKGEIN----------------SEEKQALEAKIVELRKSLEE 493
Cdd:COG1196 772 LEREIEalgpvnllaieeyeelEERYDFLSEQREDLEEARET 813
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
74-759 |
3.61e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 74 KARERETESEEHFKAIAQRELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLE-ESAH 152
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKaEEAK 1328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 153 KDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQKRKILDNELTEtisaqlELDKAAQDFRKIHNERQElikqwentIE 232
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE------EAKKKADAAKKKAEEKKK--------AD 1394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 233 QMQKRDGDIDNCALELARIKQETREKENLVK--EKIKFLEsEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGE 310
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKkaEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 311 LDSLKATVNRTSsdlEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKE 390
Cdd:PTZ00121 1474 EAKKKAEEAKKA---DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 391 VdvqlnlikgvlfKKAQELQTETMKEKAvlseiEGTRSSLKHLNHQLQKLdfETLKQQEimysqDFHIQQVERRMSRLKG 470
Cdd:PTZ00121 1551 L------------KKAEELKKAEEKKKA-----EEAKKAEEDKNMALRKA--EEAKKAE-----EARIEEVMKLYEEEKK 1606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 471 EINSEEKQALEAKIV--ELRKSLEEKKSTCGLLETQIKKlhndlyfIKKAHSKNSDEKQSLMTKINELNlfidRSEKELD 548
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKaeELKKAEEEKKKVEQLKKKEAEE-------KKKAEELKKAEEENKIKAAEEAK----KAEEDKK 1675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 549 KAKGFKQDlmiednllKLEVKRTREMLHSKAEEvlslEKRKQQLYTAMEERTEEikvhktmlASQIRYVDQER----ENI 624
Cdd:PTZ00121 1676 KAEEAKKA--------EEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKK--------AEELKKAEEENkikaEEA 1735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 625 STEFRERLSKIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNS 704
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGK 1815
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 157785668 705 CNNNYKQSFKKvTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMEN 759
Cdd:PTZ00121 1816 EGNLVINDSKE-MEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEAD 1869
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-275 |
3.61e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 40 SLQDELREY-------EERINSMTSHFKNVK---QELSITQ----------SLCKARERETESEEHFKAI--------AQ 91
Cdd:COG4913 208 DLDDFVREYmleepdtFEAADALVEHFDDLErahEALEDAReqiellepirELAERYAAARERLAELEYLraalrlwfAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 92 RELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLKcqmnwdqqaleawleesahkdsdaltlQKYAQQDDNKI 171
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELE---------------------------AQIRGNGGDRL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 172 RALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDncalelARI 251
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE------AAL 414
|
250 260
....*....|....*....|....
gi 157785668 252 KQETREKENLVKEkIKFLESEIGN 275
Cdd:COG4913 415 RDLRRELRELEAE-IASLERRKSN 437
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
458-765 |
5.66e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 5.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 458 IQQVERRMSRLKGEINSEEK-QALEAKIVELRKS--LEEKKStcglLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKIN 534
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERyQALLKEKREYEGYelLKEKEA----LERQKEAIERQLASLEEELEKLTEEISELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 535 ELNLFIDRSEKELdKAKGFKQDLMIEDNLLKLEVK--RTREMLHSKAEEVLSLEKRKQQLytamEERTEEIKVHKTMLAS 612
Cdd:TIGR02169 269 EIEQLLEELNKKI-KDLGEEEQLRVKEKIGELEAEiaSLERSIAEKERELEDAEERLAKL----EAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 613 QIRYVDQERENISTEFRERLSKIEKLKNRYEiltvvmlppegEEEKTQAYYVIKAAQ----------EKEELQREGDCLD 682
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELE-----------EVDKEFAETRDELKDyrekleklkrEINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 683 AKINKAEKEIYALENTLQVLNSCNNNYKQSFKKVTPSSDEYELKI-QLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTL 761
Cdd:TIGR02169 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLeQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
....
gi 157785668 762 DVIE 765
Cdd:TIGR02169 493 AEAE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
74-855 |
5.71e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 74 KARERETESEEHFKAI--AQRELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDglkcqmnwdqqalEAWLEESA 151
Cdd:TIGR02169 217 LKEKREYEGYELLKEKeaLERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE-------------ELNKKIKD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 152 HKDSDALTLQKyaqqddnKIRALTLQLERL---TLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWE 228
Cdd:TIGR02169 284 LGEEEQLRVKE-------KIGELEAEIASLersIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 229 NTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGnntEFEKRISVADRKLLKCRTAYQDHETSRIQLK 308
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN---ELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 309 GELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDmlkEEEKDV 388
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE---RVRGGR 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 389 KEVDVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVeRRMSRL 468
Cdd:TIGR02169 511 AVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKM-RDERRD 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 469 KGEINSEEKQALEAKIVE-----------------LRKSLEEKKSTCGllETQIKKLHNDLYFIKKAHSKNSDEKQSLMT 531
Cdd:TIGR02169 590 LSILSEDGVIGFAVDLVEfdpkyepafkyvfgdtlVVEDIEAARRLMG--KYRMVTLEGELFEKSGAMTGGSRAPRGGIL 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 532 KINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKvhktMLA 611
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE----ELE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 612 SQIRYVDQERENISTEFRERLSKIEKLknryeiltvvmlppegeEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKE 691
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEEL-----------------EEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 692 IYALENTLQVLNSCNNnykqsfkkvtpssdEYELKIQLEEQKRAvdekyrYKQRQIRELQEDIQSMENTLDVIEHLANNV 771
Cdd:TIGR02169 807 VSRIEARLREIEQKLN--------------RLTLEKEYLEKEIQ------ELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 772 KEKLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLLK---DTKDETMEEQDIKLREMKQFHKVIDEMLVDIIEE 848
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
....*..
gi 157785668 849 NTEIRII 855
Cdd:TIGR02169 947 PEEELSL 953
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
140-608 |
7.67e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 140 QQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQ---KRKILDNELTETISAQLELDKAAQDFRKI 216
Cdd:pfam05483 225 QHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQleeKTKLQDENLKELIEKKDHLTKELEDIKMS 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 217 HNERQELIKQWENTIEQMQKRdgdidncalelarIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLlkcRTA 296
Cdd:pfam05483 305 LQRSMSTQKALEEDLQIATKT-------------ICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL---RTE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 297 YQDHETSRIQLKgeldSLKATVNRTSSDLEALrkniSKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATN 376
Cdd:pfam05483 369 QQRLEKNEDQLK----IITMELQKKSSELEEM----TKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 377 LEDMLKEEEKDVKEVDVQLNLIKGV---LFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQL--------------QK 439
Cdd:pfam05483 441 LIFLLQAREKEIHDLEIQLTAIKTSeehYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELtqeasdmtlelkkhQE 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 440 LDFETLKQQEIMYSQDFHIQQVERRMS-----------------RLKGEINSEEKQALEAKIVELRKSLEEKKSTCGLLE 502
Cdd:pfam05483 521 DIINCKKQEERMLKQIENLEEKEMNLRdelesvreefiqkgdevKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 503 TQ-------IKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNL-----------FIDRSEKELDKAKGFKQDLMIE---- 560
Cdd:pfam05483 601 KQienknknIEELHQENKALKKKGSAENKQLNAYEIKVNKLELelasakqkfeeIIDNYQKEIEDKKISEEKLLEEveka 680
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 157785668 561 ----DNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKT 608
Cdd:pfam05483 681 kaiaDEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
189-473 |
1.31e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 42.84 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 189 RKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQmQKRDGDIDNCALELARIKQETREKENLVKEKIKF 268
Cdd:pfam18971 558 RRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAE-AKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKK 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 269 LESEIGNNTEFEKRISVADRK----LLKCRTAYQDHETSRI--QLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEE 342
Cdd:pfam18971 637 LESKSGNKNKMEAKAQANSQKdeifALINKEANRDARAIAYtqNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKD 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 343 TARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEV-----DVQlNLIKGVLFKKAQELQTETMKEK 417
Cdd:pfam18971 717 FSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVtqaksDLE-NSVKDVIINQKVTDKVDNLNQA 795
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 157785668 418 AVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEiMYSQDFHIQQVERRMSRLKGEIN 473
Cdd:pfam18971 796 VSVAKAMGDFSRVEQVLADLKNFSKEQLAQQA-QKNEDFNTGKNSELYQSVKNSVN 850
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
313-853 |
1.51e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 313 SLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVD 392
Cdd:TIGR04523 23 GYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 393 VQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEI 472
Cdd:TIGR04523 103 SDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 473 NSEEKQALEAKIVELRK-----SLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKEL 547
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLelllsNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 548 DKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTameerteeikvhkTMLASQIRYVDQERENISTE 627
Cdd:TIGR04523 263 NKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN-------------KELKSELKNQEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 628 FRERLSKIEKLKNRYEILtvvmlppegEEEKTQAyyvikaAQEKEELQREGDCLDAKINKAEKEIYALENTLQVLNSCNN 707
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQL---------KKELTNS------ESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 708 NYKQSFKKVTPSSDEYELKIQ-LEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLS 786
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKkLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS 474
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 157785668 787 KETEEQKPKLERVTKQCAKLTKEIRLLKDTKDETMEEQDIKLREMKQFHKVIDEMLVDIIEENTEIR 853
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKIS 541
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
293-825 |
1.85e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 293 CRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNI----SKIKKDIHEETARLQKTKNHNEIIQTK--------- 359
Cdd:pfam10174 100 SPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLeemeLRIETQKQTLGARDESIKKLLEMLQSKglpkksgee 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 360 LKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLnlikgvlfKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQK 439
Cdd:pfam10174 180 DWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREEL--------HRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRD 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 440 LDFEtlkQQEIMYSQDFHIQQVERRMSRLkgEINSEEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHND-------L 512
Cdd:pfam10174 252 LEDE---VQMLKTNGLLHTEDREEEIKQM--EVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQnsdckqhI 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 513 YFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKR---- 588
Cdd:pfam10174 327 EVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKienl 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 589 ------KQQLYTAMEERTEEIKVHKT-----------MLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILtvvmlp 651
Cdd:pfam10174 407 qeqlrdKDKQLAGLKERVKSLQTDSSntdtalttleeALSEKERIIERLKEQREREDRERLEELESLKKENKDL------ 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 652 pegeEEKTQAYYVIKAAQEKE--ELQREGDCLDAKINKAEKEIYALENTLQVLNSCNNNYKQSFKKVTPSSDEYELKIQL 729
Cdd:pfam10174 481 ----KEKVSALQPELTEKESSliDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEI 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 730 EEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLErvTKQCAKLTKE 809
Cdd:pfam10174 557 NDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK--HGQQEMKKKG 634
|
570
....*....|....*.
gi 157785668 810 IRLLKDTKDETMEEQD 825
Cdd:pfam10174 635 AQLLEEARRREDNLAD 650
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
611-819 |
5.37e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 611 ASQIRYVDQERENISTEFRERLSKIEKLKNRYEILTvvmlppegEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEK 690
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALL--------KQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 691 EIYALENTL--------QVLNSCNNNYKQSFKKVTPSSDEYElkiQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLD 762
Cdd:COG4942 91 EIAELRAELeaqkeelaELLRALYRLGRQPPLALLLSPEDFL---DAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 157785668 763 VIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLLKDTKDE 819
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
458-632 |
5.88e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 458 IQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNS-DEKQSLMTKINEL 536
Cdd:COG4913 271 LAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 537 NLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRY 616
Cdd:COG4913 351 ERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
170
....*....|....*....
gi 157785668 617 VDQERENI---STEFRERL 632
Cdd:COG4913 431 LERRKSNIparLLALRDAL 449
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
32-350 |
6.17e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 32 SKLKDERASLQDELREYE-------ERINSMTSHFKNVKQELSIT--QSLCK--ARERETESEEHFKAIAQRELGRVKDE 100
Cdd:PRK01156 405 DAIKKELNEINVKLQDISskvsslnQRIRALRENLDELSRNMEMLngQSVCPvcGTTLGEEKSNHIINHYNEKKSRLEEK 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 101 IQRLENEMASILEKKSD-KENGIFKATQKLDGLKCQMNwDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQ-L 178
Cdd:PRK01156 485 IREIEIEVKDIDEKIVDlKKRKEYLESEEINKSINEYN-KIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEdL 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 179 ERLTLECNQKRKILDNELTETISAQLelDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREK 258
Cdd:PRK01156 564 DSKRTSWLNALAVISLIDIETNRSRS--NEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEN 641
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 259 ENL---VKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQdhetsriQLKGELDSLKATVNRTSSDLEALRKNISKI 335
Cdd:PRK01156 642 KILiekLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK-------KSRKALDDAKANRARLESTIEILRTRINEL 714
|
330
....*....|....*
gi 157785668 336 KKDIHEETARLQKTK 350
Cdd:PRK01156 715 SDRINDINETLESMK 729
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
28-226 |
8.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 28 EDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSLCKARERETESEEhfkaiAQRELGRVKDEIQRLENE 107
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAS-----AEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 108 MASI--LEKKSDKENGIFKATQKLdglkcqmnWDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERLTlec 185
Cdd:COG4913 684 SDDLaaLEEQLEELEAELEELEEE--------LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE--- 752
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 157785668 186 NQKRKILDNELTETISAQLELDKAAQDfRKIHNERQELIKQ 226
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALR-ARLNRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
523-774 |
8.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 523 SDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEE 602
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 603 IKVHKTMLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILtvvmlppegeeektqAYYVIKAAQEKEELQREGDCLD 682
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL---------------KYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157785668 683 AKINKAEKEIYALENTLQVLNSCNNNYKQsfkkvtpssdeyeLKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLD 762
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEA-------------LKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
250
....*....|..
gi 157785668 763 VIEHLANNVKEK 774
Cdd:COG4942 231 RLEAEAAAAAER 242
|
|
| |
