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Conserved domains on  [gi|32563621|ref|NP_871796|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial [Caenorhabditis elegans]

Protein Classification

complex I 30 kDa subunit family protein( domain architecture ID 10012648)

complex I 30 kDa subunit family protein, such as bacterial NADH-quinone oxidoreductase subunit C (NuoC) and eukaryotic NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, which are part of the core domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone/ubiquinone with the translocation of protons across the membrane

CATH:  3.30.460.80
EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0045271
PubMed:  26807915|33957129|32058886|31935361

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 53-237 2.30e-77

NADH dehydrogenase subunit C; Provisional


:

Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 232.49  E-value: 2.30e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   53 ERLANFGKYAAECLPKFVQKVQFAAGdELELLIHPSGVVPVLSFLKGNHSAQFTNLTFITGMDVPTRKNRLEVIYSLYSV 132
Cdd:PRK06074   2 EKLEELVAKLLEKLPDAIGKVTVAFG-ELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  133 RFNARVRVRTYTDEIAPIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPE 212
Cdd:PRK06074  81 KHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDE 160

                        170       180
                 ....*....|....*....|....*
gi 32563621  213 LKRVVYEPSELaqefrkfdlnTPWE 237
Cdd:PRK06074 161 QKRVVYEPVTL----------SPWE 175
 
Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 53-237 2.30e-77

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 232.49  E-value: 2.30e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   53 ERLANFGKYAAECLPKFVQKVQFAAGdELELLIHPSGVVPVLSFLKGNHSAQFTNLTFITGMDVPTRKNRLEVIYSLYSV 132
Cdd:PRK06074   2 EKLEELVAKLLEKLPDAIGKVTVAFG-ELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  133 RFNARVRVRTYTDEIAPIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPE 212
Cdd:PRK06074  81 KHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDE 160

                        170       180
                 ....*....|....*....|....*
gi 32563621  213 LKRVVYEPSELaqefrkfdlnTPWE 237
Cdd:PRK06074 161 QKRVVYEPVTL----------SPWE 175
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 63-216 2.53e-63

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 195.82  E-value: 2.53e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  63 AECLPKFVQKVQFAAGdELELLIHPSGVVPVLSFLKgnHSAQFTNLTFITGMDVPTRKNRLEVIYSLYSVRFNARVRVRT 142
Cdd:COG0852  12 EEKFGDAVLEVEEARG-ELTLTVPPEDLVDVARFLR--DDLGFDHLSDLTGVDYPERGDRFEVVYHLLSLTHNRRLRLKV 88

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32563621 143 YTDEIAP-IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPELKRV 216
Cdd:COG0852  89 FVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYDEELKRL 163
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
83-204 7.69e-57

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 177.67  E-value: 7.69e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621    83 LLIHPSGVVPVLSFLKgNHSAQFTNLTFITGMDVPtRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADW 162
Cdd:pfam00329   1 VTVDPEDLLEVARFLR-DDELGFDHLSDLTGVDYP-EEGRFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 32563621   163 FEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGY 204
Cdd:pfam00329  79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGY 120
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 85-203 5.20e-51

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 163.17  E-value: 5.20e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621    85 IHPSGVVPVLSFLKgNHSAQFTNLTFITGMDVPtRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADWFE 164
Cdd:TIGR01961   5 IKKEQLLEVLTFLK-DPALGFELLTDVSGVDYP-KEKRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTANWYE 82

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 32563621   165 REVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSG 203
Cdd:TIGR01961  83 RETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
 
Name Accession Description Interval E-value
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 53-237 2.30e-77

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 232.49  E-value: 2.30e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   53 ERLANFGKYAAECLPKFVQKVQFAAGdELELLIHPSGVVPVLSFLKGNHSAQFTNLTFITGMDVPTRKNRLEVIYSLYSV 132
Cdd:PRK06074   2 EKLEELVAKLLEKLPDAIGKVTVAFG-ELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  133 RFNARVRVRTYTDEIAPIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPE 212
Cdd:PRK06074  81 KHNVRLRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDE 160

                        170       180
                 ....*....|....*....|....*
gi 32563621  213 LKRVVYEPSELaqefrkfdlnTPWE 237
Cdd:PRK06074 161 QKRVVYEPVTL----------SPWE 175
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 63-216 2.53e-63

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 195.82  E-value: 2.53e-63
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  63 AECLPKFVQKVQFAAGdELELLIHPSGVVPVLSFLKgnHSAQFTNLTFITGMDVPTRKNRLEVIYSLYSVRFNARVRVRT 142
Cdd:COG0852  12 EEKFGDAVLEVEEARG-ELTLTVPPEDLVDVARFLR--DDLGFDHLSDLTGVDYPERGDRFEVVYHLLSLTHNRRLRLKV 88

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 32563621 143 YTDEIAP-IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGYNEVRYDPELKRV 216
Cdd:COG0852  89 FVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYDEELKRL 163
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
83-204 7.69e-57

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 177.67  E-value: 7.69e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621    83 LLIHPSGVVPVLSFLKgNHSAQFTNLTFITGMDVPtRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADW 162
Cdd:pfam00329   1 VTVDPEDLLEVARFLR-DDELGFDHLSDLTGVDYP-EEGRFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 32563621   163 FEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSGY 204
Cdd:pfam00329  79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGY 120
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 85-203 5.20e-51

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 163.17  E-value: 5.20e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621    85 IHPSGVVPVLSFLKgNHSAQFTNLTFITGMDVPtRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADWFE 164
Cdd:TIGR01961   5 IKKEQLLEVLTFLK-DPALGFELLTDVSGVDYP-KEKRFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTANWYE 82

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 32563621   165 REVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSG 203
Cdd:TIGR01961  83 RETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
35-203 8.46e-32

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 117.85  E-value: 8.46e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   35 KKESPKKPtiwkIDEHKRERLANFGKYAAECLPKFVQKvqfaagDELELLIHPSGVVPVLSFLKgnhSAQFTNLTFITGM 114
Cdd:PRK08491  23 APPTPKSY----VEGSVFEKDLNHLSYKVEILESYIEL------DQAVIWIKKDDNFKVLKILK---HLGYECLSEMSAI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  115 DVPTRKNRLEVIYSLYSVRFNARVRVRTYTDEIAPIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHP 194
Cdd:PRK08491  90 DFLAKKGGFEVFYQLLSMSKRKRVRVKCFLKEKEALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHP 169


                 ....*....
gi 32563621  195 FRKDYPLSG 203
Cdd:PRK08491 170 LLKSYPLKG 178
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
72-200 3.14e-26

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 107.55  E-value: 3.14e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   72 KVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQFTNLTFITGMDVPTRKNR-----LEVIYSLYSVRFNARVRVRT-YTD 145
Cdd:PRK13292 237 RLDEGATDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDRekfpdFTVNYHLLSFDTPGHVRIKTeLRG 316

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 32563621  146 EIAPIDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYP 200
Cdd:PRK13292 317 RTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHP 371
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 73-200 1.58e-25

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 105.00  E-value: 1.58e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   73 VQFAAGDELELLIHPSGVVPVLSFLKGNhSAQFTNLTFITGMDVPTRKNR-------LEVIYSLYSVRFNARVRVRTYTD 145
Cdd:PRK11742  16 VQATRTGIPVVWVKREQLLEVLRFLRKL-PKPYVMLFDLHGIDERLRTHReglpaadFTVFYHLISIERNRDIMLKVALS 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 32563621  146 EIAP-IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYP 200
Cdd:PRK11742  95 ENDLhVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYP 150
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 63-203 9.51e-25

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 98.52  E-value: 9.51e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   63 AECLPKF---VQKVQFAAGdELELLIHPSGVVPVLSFLKGNHSAQFTNLTFITGMDVPTRK-NRLEVIYSLYSVRFNARV 138
Cdd:PRK07785  71 EEALPEFadaIERVVVDRG-ELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHDTgRELHAVYHLTSITHNRRI 149

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 32563621  139 RVRTYTDEIAP-IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDYPLSG 203
Cdd:PRK07785 150 RLEVAVPDADPhIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGG 215
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
24-212 2.04e-22

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 95.43  E-value: 2.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   24 AAVAQTNQTGDKKE--------SPKKPTIWKIDEHKRERLanfGKYAAEclPKFVQKVqfaAGDELELLIHPSGVVPVLS 95
Cdd:PRK07735 250 AARAKTKGAEGKKEeepkqeepSVNQPYLNKYVEVIKEKL---GEDVLE--DSYINKL---SKDVPTLVVEPEKYYEVAE 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621   96 FLKGNHSAQFTNLTFITGMDVPTRknrLEVIYSLYSVRFNARVRVRTYTDEIAP-IDSATPVFKGADWFEREVYDMYGVW 174
Cdd:PRK07735 322 LLRFHEQLAFDYLSELHGTDFVTH---MEVYVHLYSYGKRQSVAVKVKLDREAPqVESVTPLWKGANWPEREAYDLLGIV 398

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 32563621  175 FNNHPDLRRILTDYGFEGHPFRKDYplsgyneVRYDPE 212
Cdd:PRK07735 399 FKGHPNLSRILLPDDWVGHPLRKDY-------EPYDVE 429
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
66-219 6.06e-16

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 76.91  E-value: 6.06e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32563621  66 LPKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQftnLTFITGMDVPTRKNRLEVIYSLYSVRFNARVRVRTYTD 145
Cdd:COG3262  11 FGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGGR---LAALWGNDERELGGGFAVYYVFALEGEGALVTLKVSVP 87

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 32563621 146 EIAP-IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGF-EG-HPFRKDYPLSGYNEVRYDPELKRVVYE 219
Cdd:COG3262  88 KDDPvFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGiYPLRKDFKGGPRPAPAPAEEYFRPVEG 164
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
138-199 5.86e-15

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 70.76  E-value: 5.86e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 32563621  138 VRVRTYTDEIAP-IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDY 199
Cdd:PRK12494  98 VRLKVFLPRDDPrVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
ndhJ CHL00012
NADH dehydrogenase subunit J
 150-199 4.57e-11

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 59.71  E-value: 4.57e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 32563621  150 IDSATPVFKGADWFEREVYDMYGVWFNNHPDLRRILTDYGFEGHPFRKDY 199
Cdd:CHL00012  97 IPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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