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Conserved domains on  [gi|86564272|ref|NP_872225|]
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Ground-like domain-containing protein [Caenorhabditis elegans]

Protein Classification

Ground-like domain-containing protein( domain architecture ID 10514438)

Ground-like domain-containing protein may bind and modulate the activity of Patched-like membrane molecules

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ground-like pfam04155
Ground-like domain; This family consists of the ground-like domain and is specific to C. ...
 370-442 2.44e-19

Ground-like domain; This family consists of the ground-like domain and is specific to C.elegans. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides.


:

Pssm-ID: 461200  Cd Length: 73  Bit Score: 81.90  E-value: 2.44e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 86564272   370 NSKCNNPILKDLMEMKM-TTSPSISKQMIYSAATEMWMGRnVNVICSKHSFSYVVVTSPIFCEHRKKALTCFVF 442
Cdd:pfam04155   1 GEKCNSEELKKIIEKNIgTCNLSESKRAIQKAAEARFGGS-FEVICSEGDFSYSIFAGTLYCKVEKDGVTCLAY 73
 
Name Accession Description Interval E-value
Ground-like pfam04155
Ground-like domain; This family consists of the ground-like domain and is specific to C. ...
 370-442 2.44e-19

Ground-like domain; This family consists of the ground-like domain and is specific to C.elegans. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides.


Pssm-ID: 461200  Cd Length: 73  Bit Score: 81.90  E-value: 2.44e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 86564272   370 NSKCNNPILKDLMEMKM-TTSPSISKQMIYSAATEMWMGRnVNVICSKHSFSYVVVTSPIFCEHRKKALTCFVF 442
Cdd:pfam04155   1 GEKCNSEELKKIIEKNIgTCNLSESKRAIQKAAEARFGGS-FEVICSEGDFSYSIFAGTLYCKVEKDGVTCLAY 73
 
Name Accession Description Interval E-value
Ground-like pfam04155
Ground-like domain; This family consists of the ground-like domain and is specific to C. ...
 370-442 2.44e-19

Ground-like domain; This family consists of the ground-like domain and is specific to C.elegans. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides.


Pssm-ID: 461200  Cd Length: 73  Bit Score: 81.90  E-value: 2.44e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 86564272   370 NSKCNNPILKDLMEMKM-TTSPSISKQMIYSAATEMWMGRnVNVICSKHSFSYVVVTSPIFCEHRKKALTCFVF 442
Cdd:pfam04155   1 GEKCNSEELKKIIEKNIgTCNLSESKRAIQKAAEARFGGS-FEVICSEGDFSYSIFAGTLYCKVEKDGVTCLAY 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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