NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|268607692|ref|NP_898973|]
View 

ubiquinol-cytochrome c reductase complex assembly factor 4 precursor [Mus musculus]

Protein Classification

CCSMST1 domain-containing protein( domain architecture ID 10633229)

CCSMST1 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CCSMST1 pfam15013
CCSMST1 family; This family of proteins was discovered in a screen of Bos taurus placental ...
 49-111 3.94e-26

CCSMST1 family; This family of proteins was discovered in a screen of Bos taurus placental ESTs. The B. taurus member of this family was named cattle cerebrum and skeletal muscle-specific transcript 1. This family of proteins is found in eukaryotes. Proteins in this family are typically between 97 and 157 amino acids in length. There is a single completely conserved residue D that may be functionally important. The function of this family is unknown.


:

Pssm-ID: 464445  Cd Length: 74  Bit Score: 93.51  E-value: 3.94e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 268607692   49 NLPIQFSGSKATPirWTVEHSLGKPQ-QRPWWKVLPLTLTLVALVVW-CYQREESGMDLWLRQVL 111
Cdd:pfam15013   1 DEPIKFSTSKAAP--WKVEHSLGGGQdQRPWYKVYPISLSLAAFLIYfCVLREENDIDEWLEKSL 63
 
Name Accession Description Interval E-value
CCSMST1 pfam15013
CCSMST1 family; This family of proteins was discovered in a screen of Bos taurus placental ...
 49-111 3.94e-26

CCSMST1 family; This family of proteins was discovered in a screen of Bos taurus placental ESTs. The B. taurus member of this family was named cattle cerebrum and skeletal muscle-specific transcript 1. This family of proteins is found in eukaryotes. Proteins in this family are typically between 97 and 157 amino acids in length. There is a single completely conserved residue D that may be functionally important. The function of this family is unknown.


Pssm-ID: 464445  Cd Length: 74  Bit Score: 93.51  E-value: 3.94e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 268607692   49 NLPIQFSGSKATPirWTVEHSLGKPQ-QRPWWKVLPLTLTLVALVVW-CYQREESGMDLWLRQVL 111
Cdd:pfam15013   1 DEPIKFSTSKAAP--WKVEHSLGGGQdQRPWYKVYPISLSLAAFLIYfCVLREENDIDEWLEKSL 63
 
Name Accession Description Interval E-value
CCSMST1 pfam15013
CCSMST1 family; This family of proteins was discovered in a screen of Bos taurus placental ...
 49-111 3.94e-26

CCSMST1 family; This family of proteins was discovered in a screen of Bos taurus placental ESTs. The B. taurus member of this family was named cattle cerebrum and skeletal muscle-specific transcript 1. This family of proteins is found in eukaryotes. Proteins in this family are typically between 97 and 157 amino acids in length. There is a single completely conserved residue D that may be functionally important. The function of this family is unknown.


Pssm-ID: 464445  Cd Length: 74  Bit Score: 93.51  E-value: 3.94e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 268607692   49 NLPIQFSGSKATPirWTVEHSLGKPQ-QRPWWKVLPLTLTLVALVVW-CYQREESGMDLWLRQVL 111
Cdd:pfam15013   1 DEPIKFSTSKAAP--WKVEHSLGGGQdQRPWYKVYPISLSLAAFLIYfCVLREENDIDEWLEKSL 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH